Array 1 214359-214876 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_KV802317.1 Rothia sp. HMSC067H10 Scaffold246, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence              	Spacer_Sequence                 	Insertion/Deletion
==========	======	======	======	=============================	================================	==================
    214359	    29	  86.2	    32	C..AA....T...................	AGATGGGTCAGTCTCTAGAATGATGACCTTAC	G [214360]
    214421	    29	 100.0	    32	.............................	AGATGGGTCAGTCTCTAGAATGATGACCTTAC	
    214482	    29	 100.0	    32	.............................	TTTGCAGGCACGGAGGTAAAACCATTGAGTTC	
    214543	    29	 100.0	    32	.............................	TGAGAATCAACCACAGTAGCCGCCTGCTCACG	
    214604	    29	  96.6	    32	...........................T.	GTCGAGCCGTGGGTACCGGGGTACCTGAACGC	
    214665	    29	 100.0	    32	.............................	TACACCAGCAAGCTCGCGCAATGCTGTTTTTA	
    214726	    29	 100.0	    32	.............................	TACACCAGCAAGCTCGCGCAATGCTGTTTTTA	
    214787	    29	  96.6	    32	............................G	AACCCTGAAGAAGCAGCTGCCACACTCTCGCT	
    214848	    29	  75.9	     0	G.T...........T........A.TT.T	|                               	
==========	======	======	======	=============================	================================	==================
         9	    29	  95.0	    32	ATGTTCCCCGCACCCGCGGGGATGAGCCC	                                	       

# Left flank :   AGTAGGGGCGAATTGCCGGATCCGCTTCGAGGGCGTTTCGAACCAGTTGTTTGCTCGATAGCACCGCTTCCACTGCTTCCTGCCCCACAGCCAACCAGCTCGGCATTCCGTCAGGCAGAACTACCCGGACACAACCATGTGTTATGCCTGTCTTCTTGTAGATTGTGTCTGCCGATGCAAAGTCACCGTCTCCTAGCTGGACTATAGCTTTGTTTTGCATGCTTTCCCTTTCGGTCCTGCTGTTTATTTGCATTCGGAGTTTCTCAAGTGCTGGTTAGGAGAGGGGAGGGCGCAATGAATTTCTTTTAACCTACTTTTATCGGCTACCTGGAAAATTCAACCAGTAGAACACGTCCTCTAGAAAAGGAAAACAATGGACAACAAGTTGAATCCAGATAATACGAAGGCCTCCGCTTGCCGCATTTACGACACACTTATCGGTGGGGTGAATCTGCAAGAGATAGACAAGAAGTACTACGACACACTTCTTGAGATCAGCC
# Right flank :  TTCAACCCTATGAGGAATACTCCCTTAAATCTAGTGATGCATATCATGCTTATTGGAGTTGGTGGGGTATTCCCTTAACTGTATAGTTATATATGTTGTTCGGGCGGGTCCCGAAAAAGCAGTCCGGCCCCATCGTATAGCGGCCTAGTACTCCGCCCTCTCACGGCGGCAACACCGGTTCAAATCCGGTTGGGGTCACACTAGGGAAAAGAGAATTCCCCGGTTCGCCTGAACCGGGGAATTCTCTTTATCTTTATAAATGCCAAGAGGTCAGGATTTTCTAAAAGGCACTTATATAACCTTTTCGGCAAAACCTAACCCGCTCGCCTCATAACGTGAATAACCAGAAACGGGGGAGCAGCCTACTTATTCTCCCCGCCCGCACTCGCAGACCCTGGCGCACTAGCAGGAGCACGGTGCACCATACGCCACGTTCCCTCAAGATAATGAGCCGTCACCTGGCCCGAGACGACACCGCTCGGCACCTTAAAAACCTCAGG

# Questionable array : NO	 Score: 6.13
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     ATGTTCCCCGCACCCGCGGGGATGAGCCC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [4,4] Score: 0.37/0.37
# 	Reference repeat match prediction:         F [matched CTGTTCCCCGCACCCGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  F [-12.70,-12.10] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      R [5-2] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: F [53.3-43.3]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [5.14,0.41   Confidence: HIGH] 

# Array family : I-E [Matched known repeat from this family],   
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