Array 1 848471-849829 **** Predicted by CRISPRDetect 2.4 *** >NZ_LT906621.1 Limosilactobacillus fermentum strain IMDO 130101 chromosome I, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 848471 36 100.0 30 .................................... GTTTTGTTTTGCCAATAGCAACATCGGCCG 848537 36 100.0 30 .................................... CGGCCGCAACTCACCATTAAAGTTGATTGT 848603 36 100.0 30 .................................... TACAAGACTAACGATTGGGTCGGTCTTAGC 848669 36 100.0 30 .................................... ATCAAGAAGGGCCCGTCATATATGGTCCGG 848735 36 100.0 30 .................................... AAACTAATCATGTTAGGCGAAACTAGGGGG 848801 36 100.0 30 .................................... AGTTCTCCGAATCCGTCTTCATTCTCCGTT 848867 36 100.0 30 .................................... ATAATTTCTGCACATAGCATAAGCACCATC 848933 36 100.0 30 .................................... CAAGAAGGTTAAGAATTCAGCTGAAAACGG 848999 36 97.2 30 .................T.................. CCAAAGGTCATTGTTAGTGGTTTCCGTTTG 849065 36 100.0 30 .................................... TTTGGTTACGACGCTTGGGGTGCAACGGTG 849131 36 100.0 30 .................................... GGCGCCAAGTTTGTCTTTCCACGTCTTGAG 849197 36 100.0 30 .................................... CCTTCATTTAGCAAGATATTGAAAAACCAT 849263 36 100.0 30 .................................... AGACATCTTAGGCGATGCAACGGTCATCAC 849329 36 100.0 30 .................................... CCTGTTGATTCTTGATTGCTATCAGGGCGC 849395 36 100.0 30 .................................... AAAAGCGGCAATTGTCGCATTAGGAGGTAG 849461 36 100.0 30 .................................... TTTACAACGCCAGTGATATTGCGGTTGATC 849527 36 100.0 30 .................................... TTCACAATTTACTCGACTAGCATCCGCTTA 849593 36 100.0 30 .................................... CCAACAAGTATCATAGGAATAACGCGGCTA 849659 36 100.0 31 .................................... TCCTGTTTTGGCTAGTTCTCAAAACTTATAT 849726 36 100.0 30 .................................... AATTGGAAAGTTGGTTTCGAAGATTCCAGG 849792 36 80.6 0 .........................AG...A.AATG | G,C [849814,849817] ========== ====== ====== ====== ==================================== =============================== ================== 21 36 98.9 30 GTCTTGGATGAGTGTCAGATCAGTAGTTCCGAGTAC # Left flank : TAATCCAACCAAGCTTGATAGTTACCAAACGGCACTTGATAAGATGATTGTTAAAAATCTTAGCATTCAGAAGCGAGATCGGATGAATGACCTCGCTCGTGGGGTGTTCTCAGAGATGCAAGATTCTTTGTTTGAATTTGATTTGCCCTTGGAAGTCAGGTATGACGAGAGTCTCTTGAGATTATACAAATATGCGAAAATTAAATATTTGACGCAAGTAATAAGGCAACCTTATGGTATAATTGAAACCGATTTAAAATTACATCTCGAATTAAAAGACTGTCAGGTTCTTGGGTATTGTAATGTCGCAAATTACTTATTGCCTGAGCAGATACAGGAATTCGCTACTCTTGTTGAGAAAACCGAATTGGCAGTTTTATTAGTAGAATTCTCAGAAAAGAGAGAAACTCTACAACAACTCAAACAGGATATTTACCGGATTGATCGGGACTTCGTGGACTGGCACGAATAGACCGTTAGTTTTTGATGATAAAACAACG # Right flank : GTTGGTGTAAATTAAATTCCGCGAATTTATCATTTCACAAGCTTAAGCATACCGGCTTCTTCTGAATTGTCATCTTTTTCAATCCCGTGGTAAACGGTCATGTTTAAGTACCGTGGACCAGCAGCCCATTTTTCATTCTGTTCAATCAGTAGTGCGCCCATTAGTCGCAAGACACTTAGATCATTCGGGAATATCCGGATTACCCGGTCACGACGACGGATTTCTTGATTAACCCGCTCAATTGTATTATTCGTCCGGAGACGCTTCCTTAGCTCCTCTGGGAGCTGGTAAATCACCATTAATTCGTCAAAACTATTTTCTAATTTCTTCACCACCTTAGGGAACTCGGTCTGCCAATCTTTAACCAATTGGTCACGCCGTTCAATCGCTTGGTCGTACGTTGGAGCATTAAATAAATCTTTGAGTCGGTTAGCAACTTCTTTACGATCCTTGAGTGCCAGAATACTTGTACAGTCATTACTAAAATGAAATTGACATCT # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTGGATGAGTGTCAGATCAGTAGTTCCGAGTAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.60,-1.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 2 1296955-1294237 **** Predicted by CRISPRDetect 2.4 *** >NZ_LT906621.1 Limosilactobacillus fermentum strain IMDO 130101 chromosome I, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1296954 29 100.0 32 ............................. CAGACAACTAATCAGTCGCTTACGATTACGAA 1296893 29 96.6 32 ............................T TATATCTCCAACTTTCAAATCAGCATTAATTG 1296832 29 100.0 32 ............................. ACGTTGACAACCACCCAAAACATTTACTATCG 1296771 29 100.0 32 ............................. CATTCAACCCCTACCTTTGGTAAGTAGTTAGC 1296710 29 96.6 32 ............................T CGCCACTATGTCAGCCGGGTTAGCCGTTAAAA 1296649 29 100.0 32 ............................. CTCAATCACTACTGATGCATCGGGGAACGCCG 1296588 29 100.0 32 ............................. AGAGAAGGAGGTGGCTAATCTTGAGCAATACG 1296527 29 100.0 32 ............................. CAGTAATCTGTTTCCATGCGCCGAACGTCTCA 1296466 29 100.0 32 ............................. ATAGAATTTATTGCCACCTCTCATGGCACTTG 1296405 29 96.6 32 ............................T CATATCTAGCGATGACTGCTGGTCACCTTGTC 1296344 29 100.0 32 ............................. AGATTTCGCCAACGCAAAACGGGAACTTCTGG 1296283 29 96.6 32 ............................T CAAACGCTACCGTTGCCGTGCAAACCGCCAGC 1296222 29 100.0 32 ............................. CAAAGTGGATGCTATCGACGTTACTGGTGGTG 1296161 29 96.6 32 ............................T CAAGGTTAATCGTTACGTTGCTTGAGTACCAG 1296100 29 100.0 32 ............................. CGGCACAACGAAGTCAAGTACTACGTTAGAAT 1296039 29 100.0 32 ............................. ATGCAACAAAATTCTAAGGATATGGAATACAC 1295978 29 100.0 32 ............................. ATCTACAAGCACTTCGGCATCACGATCGGACT 1295917 29 100.0 32 ............................. AACTGGTACTGGAGCTTAATAATGACAATAAT 1295856 29 100.0 32 ............................. TATGACGTGGTCTTGATGGGCTATGGGATCAA 1295795 29 96.6 32 ............................T TCGTCTTGAGCCGGGATGGAACGACTTTACCG 1295734 29 96.6 32 ............................T CATATCTGACTGTGGGATTGCCTCAATTACCC 1295673 29 100.0 32 ............................. ATTAGACGTATTCTTTGCGATCTCGCCCGCCA 1295612 29 96.6 33 ............................T GATCCAGTTTCCAGTCGTGGGATCGATGTTTAA 1295550 29 100.0 33 ............................. TGAGTCTGTATCACCGATCGTTTTAGCAATATG 1295488 29 100.0 32 ............................. ACTTGGAACGAAACGGAGGTGAAGGCATTTGA 1295427 29 96.6 32 ............................T ACCGATTAAGCATGGCTGATACTCAGACTTAT 1295366 29 100.0 32 ............................. GGGAATGAGAACGTTGCAGCAAAACCGCCTGC 1295305 29 96.6 32 ............................T TAAACGATGCCTGGATTGAATCAGGCCAAAAG 1295244 29 96.6 32 ............................T GGATCATCCACGTGTCAAGAACCTCGTTACGA 1295183 29 96.6 32 ............................T TGCTTGCCCGCGACGCTTTCTAGCGATCTGAG 1295122 29 96.6 32 ............................T ACTGTTTGGCAGGACGGATATGCTTACTTAAA 1295061 29 96.6 32 ............................T AGTAGCCTCGCTAGCAGTTTGCTTGGCGATTG 1295000 29 100.0 32 ............................. TGGAGGTCACAAACCGCCGCCACTAAGATCAA 1294939 29 96.6 32 ............................T TTATGAAGCAGATGAACGACAGCAACTCCGGG 1294878 29 100.0 32 ............................. TTAATATATGGTTCGCTCAATCTATGCACCTC 1294817 29 96.6 32 ............................T TACTCAATCGGGATTGACAAGCTGAACAAAAA 1294756 29 96.6 32 ............................T GACTCCCAGCTCTGCCGTTGGAATCAAGTACT 1294695 29 96.6 32 ............................T ATTCACCAGCTTTTAGTTAGCCGGCTTTATTG 1294634 29 96.6 32 ............................T ACAGAGGCTATCCAAAGCTACTAGAAGATGAA TTA [1294619] 1294570 29 96.6 32 ............................T TGCATGATTCTATGTATTCAGAGGAAAGCCAT 1294509 29 96.6 32 ............................T AATATGGAAACTCTAGTAGGTGACGTCGCCAC 1294448 29 100.0 32 ............................. ATGTCTTGAGCTATCCGTGAAGTTTGTGTTGA 1294387 29 100.0 32 ............................. AGCCGGGCAATCCAACAGCCACAACCTGGTGA 1294326 29 96.6 32 ............................T AAGTCCGCTACTAAGCTAGTGGAACTACGCCA 1294265 29 93.1 0 ........A...................T | ========== ====== ====== ====== ============================= ================================= ================== 45 29 98.2 32 GTGCTCCCCATGTATATGGGGGTGATCCC # Left flank : GCGACAGACGAAATAATATCGATAGGGGCAGTTAAGTCAACCAAGGGGAGAGGGCTTGAACGATTTTATCGGATCGTCAGAACTAGCAAGCAAATTCCTCCTAAAATTGTTAAATTAACGGGACTTAACCAACGAAAGGTTAATCAAGAAGGAATTAGCTTAGAAGCTGCCCTTACGGATTTCAAAGATTTTATTGGGCACGCAACAGTGGTTGGTTATAATGTTGCATTTGACTGGGAATTTATCGAACGAGGGTATGATAAAATAGGACAAGATCGCTTAGGTAATCGAATTATTGATTTACTTAAAGTGGTTAGGCAAAAGGAAGTCTTTTTGGATAATTTTCGCTTTGAAACGGTTCTAAAATACTACCAAATTGAGAATCATGATCAACATAATTCACTAGCGGACGCCGAGGCATTGATCAAGCTCATGACCAAACTGATTGAAAAAGGTTTTTTGAAGATTTGAAAATCGCTTGGTTACAGGGATCTTTTAAT # Right flank : TTTTTTGTGTGCCTGAAATGTCAATTTAAGTTAGAAAAAAAGTTGTCGTTGATCCTCTGTGATATGTTCCATAAATACCTCATAAGGTGTCCGATAGTCTAGTGACTTTCTTGGAATTCGATTCCGCTTACTCATGAGCTGGTTCACTAACTCATCTGGAAGGTTGCGTAAGTCACGATCCTTGGTCAAGCCGTCGCGGCGAAGAAGGCCATTGTTGTTCTCGTTGAGCCCCCGTTGATTTGGGGCACCAACCTCGGCGAAGTAGGTGTGGATGTCAAATTGGTTGGCAATCTCCCGCCACCCAGCGAACTCCTTCCCGTTGTCAAAGGTGATCAACTTGAAGAAGTGGCGCGGAAACTTACTTAACCATTCACTTAGGTGGCGGTTGATGTTCTCAGCCTTCTTAGCGTGAACGTTTAGGACAATTTCGACCTTAGATAAGTGCTCAACTAAGGTCATGACCGCCCCTTGATGGTGCTTACCTTGAACGGTATCACCTT # Questionable array : NO Score: 5.89 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.72, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCATGTATATGGGGGTGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCATGTATGTGGGGGTGATCCT with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.50,-9.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //