Array 1 40935-40033 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABKRJ010000004.1 Kurthia massiliensis isolate MGYG-HGUT-01406, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 40934 33 100.0 35 ................................. TATGATCGCCAATTCCTAACACCGTGCGAATTATC 40866 33 100.0 35 ................................. TTGTCTAATAACTCGTTGTTAACAGCAAAGTTAAT 40798 33 100.0 33 ................................. CATCAGTCCACCGACGGCTGTACCCGCTACTTT 40732 33 100.0 35 ................................. TCCGCGTTTTTGATTGCAAGGATAAGAATAAAAAC 40664 33 100.0 32 ................................. ACCTGAACTGTGCAATAGCATTGTTTCGACAC 40599 33 100.0 36 ................................. CACGATGCCCTGTGCCACTTCCACTGTTGTTACCTC 40530 33 100.0 32 ................................. ACCTGAACTGTGCAATAGCATTGTTTCGACAC 40465 33 100.0 33 ................................. AAATTATTGGAGGGTTAAAGATGACAGCAGTAA 40399 33 100.0 34 ................................. CACAAACAACGAGGCATATTATTATTTTTGTGTC 40332 33 100.0 33 ................................. AATGTGTGCTGTTGCTTTGATTTTTTCTAAGAT 40266 33 100.0 33 ................................. TCGTATGGAATACCTAGCAACGACAGGGTTAAC 40200 33 100.0 33 ................................. ATTGCATCTGCGTTGAGTTGTACGTCTAAGATG 40134 33 100.0 36 ................................. CTTCGGTTTTGCGAATAAATGCGCTAATTGCGCCTA 40065 33 75.8 0 ..................G..ACT..CCT...G | ========== ====== ====== ====== ================================= ==================================== ================== 14 33 98.3 34 GTCTCACCCAAGTACGGGTGAGTGGATTGAAAT # Left flank : CTAAGAGGAGATGTTGAGGAGTACGCACCTTTTTTATGGAAGTAGGTGTATGGTGTTAGTCTTAGTAACTTATGATGTAAGCACAAAAACGTCGGCAGGTAGAAAACGTTTAAGACAAGTGGCTAAAATTTGTTGTAACTCAGGTGTACGTGTCCAAAATTCTGTATTTGAATGTATCGTAGACCAAACTCAATTTATAATTTTGAAGAAAGAAATAGCTAATATAATAGACCCGACAGAAGATAGTATTCGTTTTTATAGATTAGGAAATCAATACAAATCCAAAGTAGAACATATAGGGACGAAACAAAGTATTAATGTAGAAGATCCTTTGATTTTTTAGTGCGAATATATAGCTATCATGAATTTCCTAGGGGATTCGCACCTATTTTCTTAACTTTTAAATTAAAAATTAATATATTATTTATTTTTAAAGAAATGATTAACTAAAAAAACTGTATTTTTTTATAAAAAATGTAGCTTTTAGCGATTTTTTCGCT # Right flank : AATTGAGACAACATAAAAAGAGAAAGACACTTTCAGGGTACAAAAACTTTGGAGGTGTTTTTTGATGGGTAAAAAACAAGTATATTCGTATGAAACAAAAATAAAAGCGATTGAAATGAAATTAACACAAGTGCCAACAAAAGAAGTGAAGGAGGTATGGGGGATTAAAAATGAAACACAAATCTATCAGTAGGCGAAATGGTTTAAAGATGGGGAGTTGCATCGATTAGAACAGCTAATTGGCAAGCAATATAGCTATAGTAAAGGACCTTATGAAGAAGGCATGAGTGAGATGGAACAGTTAAAAATTAAAAATGAAGTGTTAGCTATTCAAAATACCTTACTAAAAAAGTACAGCGAATGGAAAAGGAAGGGATGAAGCAAATTTCATTCCAAATTATCAAGATATTAAGTGAACGATTCCCTTTGAAACAAGTATCAGCAGCAGTAGGAGTCGCACGTTCAACCCATTACCTATGGAAACAAGCCCCTCCAACAAA # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:0, 3:3, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCACCCAAGTACGGGTGAGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.52%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.70,-5.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [66.7-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.18 Confidence: HIGH] # Array family : NA // Array 2 49754-49127 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABKRJ010000004.1 Kurthia massiliensis isolate MGYG-HGUT-01406, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 49753 32 100.0 33 ................................ ATCGAAATATTTATCAAATGAACGTTGTTTATA 49688 32 100.0 34 ................................ ATCGCTTTCATGAAACGGAGTAAGCGTGTCAATG 49622 32 100.0 33 ................................ GTTGTGATCGGGCCGATATCTTTTTTAAGCATC 49557 32 100.0 34 ................................ CGCCATTTAGTTGCACCTCCTCCGTAAGTTGTCC 49491 32 100.0 35 ................................ AATCGGGTTGAGTGCTTCTGCTTCGTCCGCATCTA 49424 32 100.0 36 ................................ CTGCGTGGGTTATTTCAGATAACGACGTAAAAGAAA 49356 32 100.0 33 ................................ TTTTTGTCTTTGGACATCGAGTTCACATGCAAC 49291 32 100.0 34 ................................ GTTAGAGACTGTTGATACATCTCTTTAATGATCT 49225 32 100.0 34 ................................ CAAATATCGAGCATCAAAACATCTTTCGTCATCG 49159 32 84.4 0 ......................TCT..TT... | A [49138] ========== ====== ====== ====== ================================ ==================================== ================== 10 32 98.4 34 GTCTCACTCTTTATGAGTGAGTGGATTGAAAT # Left flank : ATGTAACGAAAGAAATGAAGTTGTTACAACGCTTTTTAAAACAATAATGTACAAAACTTCTCGACGAGCTTCGAGAGGTTTTTTTGCGTGTTATAATGTAAAAAAATGTAAGAAATATATGAAAAAATATTATTAAGTATAGCGACTACAACATTGCTTACTACATTACCAATGGCTGCTTTTGCAGAAGAGCTTGATCGAAATATGCCGACAGATGAACAAATCGTTCAATTGTTATGAAATAATTAAACAAGCAAAGACTTTTTGGGACTTAAACATATAAAATGGGATAATATTGAAAATTTTAGAGATTAAATGTTATTATTATGAATAATTCAGTTGGTGCGAATAGGAGGCAAACACGATTTACTAAGGAGATTCGCACCTGTTTTTATAATTTTATAGTTAAAATTGGAGGAATAATTTCTTTTTAAAGAAAAATTTTCTTTTGATTATAAGATATTTACTTGGAAAAAGCTCTTTTTAAGAGATTTTCCGCT # Right flank : CTTGAAAATAGGTTTTGAATTCTAAAATAGGAGGAAAAATGATGTATATTGCAAGGATTGTGGAAGATGGGAAAGGTGAATTTCGAGAGCAAAGTTTAAAAAATCATTTATTAGGAGCTGAACAGTTAGGTAAACAATATGGGCAAGATATCGGCTTTGATAAATTAACAGGACTAACTGCTGTTTTACATGATTTAGGAAAATATAGTGAAGATTTTCAAGTTTATATTAGAGAAGCAGTATATCAACCTGAAAAAAATGTTAAAAGAGGGAGTGTCCCACATGCTTTTGCAGGCGGCCATTTTTTATTTAAAAATATTAATTATGATCTAATTGATGAAAGCAAGGAAGATGTAGAACGTGTCTTAGAATGTATGGCCAATGCTATTTATTCACACCATGGAAAGTTAAAAGATGTTGTTACGCCTAATGAACAATCTGAATTATATTTAAAAATGATAAAAGAGATTCCGGATTATAAAGAAATTGAAAGCCACTTT # Questionable array : NO Score: 9.18 # Score Detail : 1:0, 2:3, 3:3, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCACTCTTTATGAGTGAGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.50%AT] # Reference repeat match prediction: R [matched GTCTCACTCTTTATTGAGTGAGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.60,-3.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //