Array 1 108096-108899 **** Predicted by CRISPRDetect 2.4 *** >NZ_JGZU01000003.1 Bifidobacterium tsurumiense strain JCM 13495 Contig03, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================ ================== 108096 36 100.0 28 .................................... TGTCACCATTCTTGATGTTCGAGAACCT 108160 36 100.0 28 .................................... CTTGGAAACACTGATGAACGCCGTCAGG 108224 36 100.0 28 .................................... AACGAACAGGAATTCCTCGACGGGCACG 108288 36 100.0 28 .................................... AGCACTAATCAGAGCTTGGCCGGATGCC 108352 36 100.0 28 .................................... TGCGACAAAGGATATGCGGTGACCGAGG 108416 36 100.0 28 .................................... CAGAGACATCTTCGACATGCTCTACCGG 108480 36 100.0 28 .................................... AAAGTGCTGCAAGAGACAGCAGAAAAAA 108544 36 100.0 28 .................................... CATTTCCTCCTTGGACAGCTCTCCCAGC 108608 36 100.0 28 .................................... CATCAACGGCATCCAGCCCGTCGAAGCC 108672 36 100.0 28 .................................... AACGAGGATGACACATGCGAGGATGATT 108736 36 100.0 28 .................................... GATTTTGTGATTTCACGGATTCCAAAGC 108800 36 100.0 28 .................................... AGACTTCCACGCACGACGAAGCCACGTG 108864 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================ ================== 13 36 100.0 28 GCTGTGAATTAGCTTTCTACCCTCTTGATAAGATTG # Left flank : CCAACGATGATCACGAATACGTAATCACTCGAATCGGAGTCAGACATTTCCGAAATTCCAACAAGTACCACGATAATTGTCAGTATTACGCCGACCCACGCCAATACTTTTGCTGTCGCAATATACCCAAAGCCATACCTTGAATCCACATTCCTAAGCATCGGTGGTTGAGTTTGCATTTTCTGATACTGTGGGTTCCCTTGATTTTGCGATGCTTGATTTATATTCTGTGACATGGCTTCCCTCCCTGCCTTTATATAGTCACATGCTCTTAAGGCTAGTGCCATCGAACCATTTCTCATAATATCTGTAGATAAGTCTCGAATATTGATCCATTTCAAATAGGAGTAAATACGACACCATCGTTCTGATTCCACGTTTTAGCTGATTCTCGTTTCCTGGAGTGATGTAAAGCGCACATCATCAGCTAACAAGAAGTAGCACCTATCATGTATTCGGCGTAATTGTTAAGATAGCTACAATGCAAGCCACCCGAACAG # Right flank : GATCAATCTCGCCAAGAGGGTAGATTTCAACGTTTTCAGGTTGTTTTGCGTTTAAAAAAGCAGCAAAGTGTCAGGTGTTTCATCTTCTAGTTGAGGCCTTAAATTTGCAAATCGGAGAGATTTTGACCATTGCTTATCGGTTATGTGCAAAATCCTCACTTTTCCATTAGGTGGAAGATTTTCTTTGACTTTCAAAACAGTCGTACGGTTCCCATCTGCCGTTGGTGAGTAACGGGCATACACGGAAAACTGAATCATGCAATATCCCATATCCTGGAGCAAATGCCTGAACACAGCAGCATCATGACGTTCTCGCTTGGTCAAAACAGGAAGATCGAACATAACAAGACACCACATTCCACCACTATCCTCGTCGATTTTCATGGTTAATCCTTGACATATTGTGGAATTTCAATTTTGTCTAGCTTTCGCTCCACATACAGTGCATACTGCTGGCTGAAATCATTGATTTTGCTCGGAATCGTTAATCCTTCGCCATT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTGTGAATTAGCTTTCTACCCTCTTGATAAGATTG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.10,-0.50] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [55.0-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 1 36590-37055 **** Predicted by CRISPRDetect 2.4 *** >NZ_JGZU01000002.1 Bifidobacterium tsurumiense strain JCM 13495 Contig02, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================== ================== 36590 36 100.0 36 .................................... TGGGCGCTCAAAGCCCTCGACGAGGAGCAATGCGAG 36662 36 100.0 34 .................................... GTGATCGCGTCACCTGCGTGTTCCTGCCGGTCAC 36732 36 100.0 38 .................................... CTCTGCCTGACTGGATTGCCTTCGCGTTCATGCCGTGG 36806 36 100.0 36 .................................... ACGGCCCACTGGCCGGTGAACCGGTCGAATGCGGGG 36878 36 97.2 35 ............................A....... CCAACGAATACGGAGCAACACGAAAGGACATGACC 36949 36 94.4 35 ...............G............A....... AACCGATTCGGACGCGATGACGGACCGGTCGGAGT 37020 36 86.1 0 ..........C..AGT............A....... | ========== ====== ====== ====== ==================================== ====================================== ================== 7 36 96.8 36 ATTGCCAGAGTTATAAGCTCTGGCCTTCGTTGAGGA # Left flank : TACTTGATTGCGTATGACATCGTCGATGACAACAGACGAAGTCATGTGGCAAAAGCATTGCAATCATATGGAGAGCGGTTGCAATACAGCGTATTTTTGCTTGAAGTCAGGCCGGCACAGATGATTCGAGTTCGCCAGCAATTGGAGTCTGAAATGGATCCGCAAGATAATTCGATTATTGTGTGTCCGCTCGGAAACAGCGCTCGTGCTGCTCAAGAGATTCAGTTTTTAGGAAGACATAGCTACGAGGATGTGGCTATTCCTACAGTGATTTAGCGCATAATGCGCTGGTTGTTTGATAATTCAAGAGTGGATTTTACATGGTTATGTGGTTGCGAGAGGTTCATCAGGTGGGAGATGGTGCCTCAAGCACTCGCGGTTGGAATTCTGCGGATTGTTGAGCGTGTTTGTGTTTGTGGGCCTTTGTGAATGGCGCTTTCGGAGAGCCGCTCGCGAAATAGGTGATTTATGCAGTCGCTCGAGTCCTTTATTATGGGTCT # Right flank : AGCGTTGAACGTCAATTGTCTTGATCCCATTTGGAAAATCTCCTGCATCGTGAACCAGCGATTGAGACGCAATTTAACTCAAAAATCGTTCATTCATGGCAGGATATAATCCATGCTTAGCATTCGCTGGTTTGCGGAATCGGCCACGTCGTTCCCACCTCGCCACTGCTATAGTCAAAGACCATGAAGCTCCTGCACACCGAAAGACTGACGCTCAGGCCGTGGCGCGAGGATGATGCGCCGACCTTGTTCGCTTTGGGGTCTGAGCCGAGCATTGGTCTCAATGCAGGGTGGTCTCCTATTCGGGATATTGAAAATGCTCGGGATGTCATTGAATCGGTATTGAGCAATGACTTCACATATGCAATGACCCTTCGTGAATCAGATGAACTTGTCGGGTGCATTGCGCTGAAACCAGTAGCCGAATCGGTGCTCTCTCTCGTCCATAAAGGTCAGATTGCGGGATTGGAAACCGATGAGTTGGACAACTTAGATCAAAC # Questionable array : NO Score: 3.10 # Score Detail : 1:0, 2:0, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCCAGAGTTATAAGCTCTGGCCTTCGTTGAGGA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.30,-4.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA //