Array 1 1821705-1817061 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP028291.1 Acidovorax avenae subsp. avenae strain COLB1 chromosome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================================================================== ================== 1821704 32 100.0 37 ................................ GGAGAATGTCCGACCCCGTACTTATCGACATCTTGGG 1821635 32 100.0 34 ................................ ATCTGAACGATGAGTCGTTGCCCGATGAGGCAGC 1821569 32 100.0 35 ................................ AGCCGCGTCCAGCATATCCAGATGGTCCTGTATCT 1821502 32 100.0 35 ................................ GGGCCGAGACATCGACATTGCCCCCATGCTCCTTC 1821435 32 100.0 35 ................................ CATGCCTGCCACCGCCGCGGCGACATCCGCGCCGA 1821368 32 100.0 34 ................................ GAGTTCGATGGCCAGAGCATCCGCGTGGTGCTGG 1821302 32 100.0 36 ................................ CCGACCACCACCACCGAAAGGAGCGCCACCCCATGA 1821234 32 100.0 36 ................................ CGTGACCACGTTCTGCTGGGCGCGCAGCACGGTGGT 1821166 32 100.0 35 ................................ GCCGCCCTGGGCCTCACCCCCGAGGTTGTGGCTGC 1821099 32 100.0 35 ................................ TGGTGCGTGGCGATACGCTCGCCAGCGGCGGGCAG 1821032 32 100.0 35 ................................ TTCGGCTATCGCCACGTCTCCAGCCTGACGCTGGT 1820965 32 100.0 35 ................................ CCGACCGGCGTGCAGGCATGGGCGCCGCTTGCGAC 1820898 32 100.0 34 ................................ ACTTGAGGTACGCATGACTGACTATGCAATGACC 1820832 32 100.0 36 ................................ CCGAACAAGCGCCATGACGGGAGCACGCCGCGCGAT 1820764 32 100.0 35 ................................ ATCCACAGTTCCCAGTGCTCGGGCAGGCACTGGCC 1820697 32 100.0 35 ................................ CGCGACGACGGCCGGCAGCGGCACGCCGGCAGAGG 1820630 32 100.0 36 ................................ TACATCTGCCAGCGCTAGGGCTTGCGCTCTGGTTGG 1820562 32 100.0 35 ................................ ACCTTTTCGCCTAACACCAAGCCGCTACGCGGCCA 1820495 32 100.0 35 ................................ AACATCCCCCAGCCTGTAGATCTTGGGCTGTTTCC 1820428 32 100.0 35 ................................ TGGAGATGACGGCCCTGGAGGTTTCGCGGCTCAAG 1820361 32 100.0 35 ................................ GCGCTGTCCGGCGTGGGCTTCATCTGGTTGGGCTG 1820294 32 100.0 34 ................................ TCACCAAAGCCCAGGCAAAAATCGTCCTTGCGAA 1820228 32 100.0 35 ................................ CGTCGTTTGCACTATCGGAGGTATCGGGGGTGCCC 1820161 32 100.0 34 ................................ GGATCGCATCCCCAGCCGTTCAACGGATCACTCC 1820095 32 100.0 35 ................................ TCACCCACCCGAATGGAAAGCGGAAGCAAGTGCCG 1820028 32 100.0 36 ................................ CCGATCGGCAGACCGCAATATGCGCCTGCGTTGATC 1819960 32 100.0 34 ................................ TGCGGGATGGCTGCGGCGGCAGGCGGAGCGGCTG 1819894 32 100.0 36 ................................ GAAGCCCTGAGAGCCAGCATCCATGCGCTCGGAGAG 1819826 32 100.0 34 ................................ TGGCGGTGGGTCTGCACCACGTACAGGCAGTCGC 1819760 32 100.0 34 ................................ GACCTGCCGACCATGAAGATCCCCGGCGTGGGCC 1819694 32 100.0 36 ................................ CCCGTGACCGGTGACGACGACGCGCAGCGCCAGCTC 1819626 32 100.0 35 ................................ AGCGCGGATCGCAGCCCGCAGGTCGCCGATGGTAG 1819559 32 100.0 36 ................................ TTACAGAGCATTCCAAGGGCATCGAGAAAAGCCCCT 1819491 32 100.0 37 ................................ TGACCATGGCAACCCCCCTCACCTACACGACCAGCGA 1819422 32 100.0 36 ................................ GGGTACACAGCCGAGGAGGAAGACCGATTCGAGGAC 1819354 32 100.0 35 ................................ GTAGATAGATACCACATTGGAGGAAGAAAAATGGC 1819287 32 100.0 35 ................................ ATTGAGCAGACGGTCCGGCACGTCCGCTTCGACAA 1819220 32 100.0 34 ................................ GCCTTGTCCAGCGCTCTTGCAAGGCCCTTGCCGG 1819154 32 100.0 33 ................................ TGGAAATCAATTCCGGCCCCGCATCCATCTCCA 1819089 32 100.0 34 ................................ CCTACGATCCGGACATCCTGGCGCTGTTCGGGGT 1819023 32 100.0 35 ................................ GGGCGTTGGGGCGACGGTCCGGGCATCCTGAATAT 1818956 32 100.0 35 ................................ AGCATGCCGTGGCCGAGCAGACCGGGGCGCTGGAT 1818889 32 100.0 38 ................................ AGGTAGGGCTCATCGAAGATGCCCACGAACGACCGAAC 1818819 32 100.0 34 ................................ CCCTCCTGGGCACCTGGGACGGGCGCGCGCAGCA 1818753 32 100.0 36 ................................ AGCGTGTAGGCCGCTAGCCCCACGTCCGTGGCATCG 1818685 32 100.0 35 ................................ ACGCAACACCGCCCGCCGCGCTGTCGGCGACCCAG 1818618 32 100.0 35 ................................ ATGCGAGGCCGGCGCCGCATGGGACTGGGGAGCTA 1818551 32 100.0 35 ................................ CGGTGTCGGTCGCCGTCGCACGCCCTCGCCCGATC 1818484 32 100.0 35 ................................ ACCCACTCGCCCTCGGGCTCGGTGGGCGGGTTGCC 1818417 32 100.0 35 ................................ AGCTCCTGCGTGCAGAACTGCGCGAGGCGCGAGGG 1818350 32 100.0 35 ................................ TCGTCTGGTCGGGGCTTCGCCCAGTGGCGGAGGCG 1818283 32 100.0 37 ................................ CCTGCGCCACCGGGGTCCTGCCACACACCTGCAAAAG 1818214 32 100.0 35 ................................ AATAGCCGCAACCTGCCCAGCCAGGACGCGCTCCC 1818147 32 100.0 36 ................................ GTGTCCGGCTGGCGGCCTGCCATCGGATGGGTGGGC 1818079 32 100.0 34 ................................ CCGGGCCTCGTGCCCACCCCAGCACCGACCGCAG 1818013 32 100.0 35 ................................ TGTGCATCTGCGCTCGGTGTTACTGCCGCGAGTCT 1817946 32 100.0 34 ................................ ATCGATGACCGCATTGCGTTCATCCCGCGCCTTT 1817880 32 96.9 36 ...............................T GCATCGCTGTAACGGCCCTGCATCGACACGGTTTCG 1817812 32 100.0 36 ................................ ATCCAGCAGTTTGCCGATGGTCTTGGCCTTGGTCCG 1817744 32 100.0 35 ................................ GTGCGCAACCTCCGCGGCGCCACGCTGTGAGGACA 1817677 32 100.0 33 ................................ TGGGTCGGGTTGGGCTGTTTCGTTTCGGCCTCA 1817612 32 100.0 36 ................................ CGCGAAAAGCTCGGCATCGCATCGCCATCGCGCGTG 1817544 32 100.0 36 ................................ CAGGCCACCTCGATGCTGCCGGCCAGCGGCTGCTTG 1817476 32 93.8 35 .........T..................G... TACGCGAGCTTCCAGCGCTTCCCGCCCTCGCTGTC 1817409 32 93.8 36 .........T..........A........... AATGCCGAGGCTGTTGTAGGTAACCTAGCCGTTGTG 1817341 32 96.9 34 .........T...................... TTGAACTTGGCGAGGTTGTTCTCGTGGCTCTGGT 1817275 32 90.6 85 ...................T....A.A..... GACGTGTCGCTGGAATCCTGCGAGAGGACTGCGTGTGCTTGGGTTAAAACTGCTCCAAACGTGGATCAGTGACGCGCTTTGCGAC 1817158 31 84.4 34 .......A.A...A............-..G.. TACCCCCTTACAAGGCGTAGGTCGGCAGGTCAAC G [1817142] 1817092 32 81.2 0 .........T..AT.......C.TA....... | ========== ====== ====== ====== ================================ ===================================================================================== ================== 69 32 99.1 36 GTCGCGCCCCGTGCGGGCGCGTGGGTTGAAAC # Left flank : ACGTGGTGCTGAACGTGGCCTTCGGCCAGCCCACCATGGCGGTGGACACGCACATCTTCCGCGTGAGCAACCGCACGGGCCTCGCCCCCGGCAAGAACCCGCTGGCCGTGGAAATGCAGTTGCTGAAACGCGTGCCCGCCGAATATGCCGTGGATTCGCACCACTGGCTCATCCTGCTGGGCCGCTACGTCTGCCAGGCGAGGAAGCCGCGCTGCTGGGAATGCGTGGTGGCGCCGTGGTGCGATTACCAGCCGAAGACGCCGGCGCCTTGAGGGCGGGCCCTTCCGCTCCCTCCCTTTCCTTTCTTCCTTCTTTTGCCGGGCGTTGCGAACCGGGAGTGACCGGCTTGTCCGCCTGGGGTTCGCGCGGGGGCAAGTGGTTGAGGGAAAAGGGAATTTTTACTGGGTGGCGGACGGGGCGCGCAGGCTGCGGGTCGGTTGGGCGGGGTTCGCGGATGTGTGGGGGAAATGGCTGGAGTGGCGCGGGTTTATAAAGGTGCC # Right flank : GACGAGAGGCGTCGCGGCAAGATGTCCGTTATCGGTCCACGCGCAGTGCGTGCGTGAATGCGACCAACCGCCCGACCTGCCCCGCCCCACGCATTTTCGGGCGCTCTCACATCGCAGGCCCGCGCACCCCCATCCGCATCGCCACCCGCCGCTCCACCGGCAACCCATGGGCAGACTCCACGTCCATCACCCCCTGCAGCCGCGGCCCGGGCGGCGAGGCCGGGCGGAACCCCAGCCTCGCGTAGGCCGGCGCGCTACAGGGCAGGTCGGCGAAGGTGGTCAGCGTCAGCGCGACCAGGCCCTGCGCCGCGGCATGCGCCTGCGCGGCCTGGATGAGTCTCGTGCCGATGCCCCTGCGCAGCCAGTCCGCGTGCACCGACAGTTCCCAGAGATGCAGTTCCTGCCCGAAGGCCTCGGCGTCCAGGAAGCCGACCAGGTGGCAGGGCGCTGCCTCGGCCACCCAGACGGCGCCCCGCAGGATGAGCCGCTCGTGTTCCGCA # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:-0.05, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCCGTGCGGGCGCGTGGGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGCCCCGTGCGGGCGCGTGGGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.80,-10.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [21-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 4477006-4482455 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP028291.1 Acidovorax avenae subsp. avenae strain COLB1 chromosome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 4477006 32 100.0 35 ................................ AGCGCGTTGAACTCGCCCTGCAGCTTTTCGCGGGC 4477073 32 100.0 35 ................................ TTCGCCATTTGCTCGATCCAGGCGCGCTGGATCTC 4477140 32 100.0 34 ................................ CTGTTGCGTTTCGTCGTGCGCTGGATCTGTGCAG 4477206 32 100.0 36 ................................ TGGAGTATGCGGAGTGCATGCAGTCCGGTGACTGGT 4477274 32 100.0 36 ................................ CAAAGTGAGTTATGAATAAATTAGGCGGCGCTGCGC 4477342 32 100.0 35 ................................ AAGGCTGCACTGACCTTGTTCCAAGATGTCTTTCT 4477409 32 100.0 34 ................................ CCGCGCATGTTCAAGGCTGCACTGACCTTGTTCC 4477475 32 100.0 33 ................................ CCTGGAGCTGGCATTCCCCCTCGAACGTCTGAT 4477540 32 100.0 34 ................................ AATTCTTCGGTGATGTACATTTGACTACAGCTGT 4477606 32 100.0 33 ................................ TACGTTGGCAGGCTCCTTTGCTCCGTCGATCAG 4477671 32 100.0 34 ................................ TCAACGTGATCGATTCGACCTCGCCGTCGCTGTC 4477737 32 100.0 35 ................................ CGCAGCCAGCCTTCGCCAAGGCGTCCAGCTGGAGC 4477804 32 100.0 34 ................................ GCGTCCGCAAGGCATCGTTCCTGGGCCGCCCCGA 4477870 32 100.0 34 ................................ CTGCTCCCGCGTGCTGACGCGGGCGTACCCGACC 4477936 32 100.0 35 ................................ GAACTCAGCAAACACGGCCAGTAGCTGGAGATACA 4478003 32 100.0 34 ................................ GTCACGCTCACCCTTCCCAGCCGCTTCCACCCCA 4478069 32 100.0 34 ................................ GCAAGCGCCGCGATGACCTCTACGCGGAAATGTC 4478135 32 100.0 36 ................................ GGCGCCAAAGCGCTGGAGGTACTGGGCGCCGCGGAT 4478203 32 100.0 34 ................................ ACCTGCGCGCTGGAGATCGAGCGCGTGTCCAACG 4478269 32 100.0 37 ................................ CCCCAGTGTTACAGCACTGGGGGACGGGGCGACGCGC 4478338 32 100.0 37 ................................ TGCGCGCTCCCCATCGTGGGGAAGGGCGCACGCGGCC 4478407 32 100.0 34 ................................ CTTGCCCGCCAGCGCGATCTGCTGGAGATCCAGG 4478473 32 100.0 36 ................................ TGGGAATGAGGCTCGTCGCCAAACACCACCAGGTGG 4478541 32 100.0 35 ................................ CTCGGCTACTGCATCTCGCTCGCGATCAAGCTGAT 4478608 32 100.0 35 ................................ AAGTCAGCCCTCACGCTCCTGCAGGACGTGTTTCT 4478675 32 100.0 35 ................................ GTATTGTCGATGAAAGCAACCCTGAGGCGAAGCGC 4478742 32 100.0 36 ................................ CGTTTGTGAGGCTCGGCTCATGATCAACCTTCTCGA 4478810 32 100.0 36 ................................ GTCACTACGTTTGATTTGCTCCGAGCTCGTGGGGTC 4478878 32 100.0 36 ................................ AGCCGGTTGCCCTCCCGCCCGGGAGGGCCTCCGAGT 4478946 32 100.0 34 ................................ CGAGCCAACGGAAACAGAAATACCGCCCACCCAG 4479012 32 100.0 36 ................................ ACCGGGGCGACCTTCGACGGATCGGCCAGGATGTGT 4479080 32 100.0 35 ................................ CACGCATGTTCAAGGCCGCGCTGACTTTGTGCCAG 4479147 32 100.0 36 ................................ ACCGCCGGCGAGGGCCGCCCGCCGCGCCACAGCACA 4479215 32 100.0 34 ................................ GTAAGACAGTTCTTCCACCACGCGCGGCGCGGGC 4479281 32 100.0 34 ................................ GTAGTGCGCTCCCATGACCATTGCGATCTTGACG 4479347 32 100.0 34 ................................ GGCGTGGACCTGGGCCTTGCGGGAGACTCCGGCG 4479413 32 100.0 35 ................................ AAGATCAGCCGGCATTTCGGCGCCGACGTGCTGCT 4479480 32 100.0 34 ................................ GCCCTCCAGGCTGGCATGCGGGATCGCCGCATCA 4479546 32 100.0 34 ................................ TTTAGGGCGGCTATTTGCGGCCGGCGGTGCTGTG 4479612 32 100.0 37 ................................ CCAACCTCCCCAGGTTGGGGATATTACCGCCGGGGCG 4479681 32 100.0 34 ................................ CTTGGCTACTGCATCAGCCTGGCCATCAAGCTGA 4479747 32 100.0 35 ................................ GGACATGGAAGCCTCAGCAATCAGTGCGGCGCACG 4479814 32 100.0 35 ................................ TCCGGCGTGGCCGTCACCTTGGGGGACGGGTTGAT 4479881 32 100.0 34 ................................ AATGCGGACATTGCGGGATCGATACGCCGCGACC 4479947 32 100.0 34 ................................ ACGACGAGCGCGAGCGAAGGGAGTAGCCCAGAAC 4480013 32 100.0 35 ................................ GGCTTCTACAAGTCGCACACCCAGGGGGCCGCCGT 4480080 32 100.0 35 ................................ AGGGCAGGCCTCACGCTCCTGCAGGACGTGTTTCT 4480147 32 100.0 35 ................................ CGTGGCCCCCTCGGCAGCCGCGGCTCCCAGACCTA 4480214 32 100.0 37 ................................ CCCAGCTACTACGAGATCCCGATTTCGACCGTGAACC 4480283 32 100.0 35 ................................ ACGTCCATCGCCAAGGCCCAGGCCAAGGCCGGCAC 4480350 32 100.0 34 ................................ TGGTGACGTAGTAGGCCGCGATCCAGAAGGTGAT 4480416 32 100.0 34 ................................ GTGGTCCCGTCAGGCTTGTCACCCGGCTTATTGC 4480482 32 100.0 36 ................................ CCCGTCGTCGTTGAGCAGGACACACTCGGCGTCCTG 4480550 32 100.0 37 ................................ AAACTCGGCAAACACCGCCAGCAACTGCAGGTACATA 4480619 32 100.0 34 ................................ CACTTGACGGTGGATGGGGCGACGTCCTGCGCTG 4480685 32 100.0 34 ................................ ATCCGCGAGGGCATCCCGCGCCGTGTGGAATTCA 4480751 32 100.0 34 ................................ GCTGCGCTGCTTACACGCCGTCCGTGTAGGCCAT 4480817 32 100.0 35 ................................ GGGGCAGATCATTGCCGTGCGTACGATTGGATGAC 4480884 32 100.0 35 ................................ GAACAAAACCCCGGGGTGCAAACAGCATGGATCAC 4480951 32 100.0 36 ................................ ATTACGGTGAAAATTGACCAGCTTGACGAAAACACC 4481019 32 100.0 34 ................................ AAGGCAGGCCTCACGCTCCTGCAGGACGTGTTTC 4481085 32 100.0 36 ................................ CGTGGCGGACCTTGACGACGAGGCGGATGTGACCAT 4481153 32 100.0 34 ................................ AGTGCCAAAGTAACGGCAACAAGGTAGCCACGTC 4481219 32 100.0 35 ................................ CCTTGAAACGGGGATGTCTGCCCGGAAGTGGCGCG 4481286 32 100.0 37 ................................ TGCGACTCGCGCCGGGTAACCCACAGGCGACGAGGCC 4481355 32 100.0 34 ................................ GTACCGCTTTTGCGAGTCTGTAGGCCCCCAAATT 4481421 32 100.0 35 ................................ AGCCACGGTGGCACGCTGCGCGACCTCATCATCGA 4481488 32 100.0 37 ................................ ATAGTCAGCCTTGACACGCTCCATGCCACCTCGCAAC 4481557 32 100.0 34 ................................ AGCCCCGATGGCTTCAACGAGATCGCGGGCCCGA 4481623 32 100.0 34 ................................ TGACCCAGCCGCCAATGGTTTCCAGGACTGGCAT 4481689 32 100.0 36 ................................ TGCTCCACGAACGTCATCATGGGGCCGCCCACGATT 4481757 32 100.0 36 ................................ AGCTCTTCGTCCGCCCAGCACTTGCCGCCCAGGATG 4481825 32 100.0 33 ................................ ATGAGGCGGGCCATCTCGTCGTCCTTCACGGTG 4481890 32 100.0 35 ................................ CGCATGTTCGTGGGCGCGCTCACGGGCGCGCTTGC 4481957 32 100.0 33 ................................ AGTTCACTTACAACTGGACGGCAACCGTAGGAG 4482022 32 100.0 35 ................................ CGCTTCCCGAAGCAGGCCGAAGCGCTGGACAACGC 4482089 32 96.9 36 ........T....................... GGCGTCGGCAACATCGTGCTGGACCCGACCAACCTG 4482157 32 96.9 35 ........G....................... GACATCGAGGCCAAGGTCGGCGACAAGGCCAAGGC 4482224 32 96.9 35 ........A....................... GAGGTCGAAATCCGCAACAAGGACCGCGACGTCCT 4482291 32 96.9 35 ........................A....... TCTTTCGGCGTCCTGCTCAGGGCTGCCTTCCACCG 4482358 32 100.0 34 ................................ TTTCTTTTGGCTGCCCTGGCCGGCCTCGGGCAGA 4482424 32 87.5 0 ...T................C...A.C..... | ========== ====== ====== ====== ================================ ===================================== ================== 82 32 99.7 35 GTCGCGCCCCGCGTGGGCGCGTGGGTTGAAAC # Left flank : CAGCTACGATGTCCGCTCCCAGGACAAGGCCGGCGCCCGCCGGTTGCGCCACATCGCCAAGGCCTGCCTGGATTTTGGGCAACGCGTGCAGTTCTCGGTGTTCGAGATCGAAGTGGATGCCGCGCAATGGACCGCCCTGAAGGCCCGGCTGCAGCAGACCATCGACCCTGCGCAGGACAGCCTGCGGTTCTACTACCTGGGCAACGACTGGCAGCGCAAGGTGGAGCACGTGGGTGCCAAGCCGGTGCTGGATTTGAACGGGCCGCTGGTGCTGTAGCGCCTCTCGTTCCCCCTCCTCTTCTTCTTCATCTTCCAATCATCCGGCGCGAACCGGAAGCGACTGCCTGCGCCCAGGAGAGGTTCGCAGCGTGGCAAGTGATTGATGTGCAAGGGGATTGTTGGACCATGGGCGGCTTTGCCAGGCGAATGCCCTGTTCTGTGGGCAGGTTCGCGCGCGTTGGCGGAAAAGTGGAGCAATGGCGCGGGGTTATAAAGACGCC # Right flank : CTCGACATCAGCGGCACAGGAGTTGGAAACCCATACTGGAATCCCACGCTCCCGCCTATCGCCCCAGTCCGACATCCCCCCACCCCTCCTCCCCGGACACTGCCTCCATGCCCCTGCACCGCCGCACCCTCTACCGCGCTGCCGTCCTCGCCCTGGGCTTGGCAGCCACGCTCCGCACCGCCTGGGCCACCGGCAGCGGCAGCCAGAACGACAATCCAGAGGGCAACGCCAACCCCCTCACCGCCGAGCGCTGGCAAACCCGCCCCGTCGTGGTGGTCGTCCCTCAGGAAAACGCCCCCCTCCTCGCCAAGGTGCGCGCCGCCCTGCAGGAACCGGCCCTGCGCGAAGGCTTCCGCGAGCGCGACATGGTGCTGTTCACCGTGGTGGCCGGCCGGGGCCGCCGCAATGGGCAGGCGCTGGGGGCCGCGCGCACCGCGGCGCTGCTGAAGGCGCTGGACCTGGACGCGATGGGGCCGGCCACGTTCATCCTCGTGGGCAAG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCCGCGTGGGCGCGTGGGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCGCCCCGCGTGGGCGCGTGGGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.30,-10.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //