Array 1 145702-145902 **** Predicted by CRISPRDetect 2.4 *** >NZ_KI912593.1 Prevotella intermedia ATCC 25611 = DSM 20706 strain ATCC 25611 B129DRAFT_scaffold_6.7, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 145702 47 100.0 30 ............................................... GGGGGCTATACACGCCCCCACGTTGTTTTA 145779 47 100.0 30 ............................................... ACAAAGACGCTGAAAATAACCGTCTTGCCT 145856 47 100.0 0 ............................................... | ========== ====== ====== ====== =============================================== ============================== ================== 3 47 100.0 30 GTTGTGATTAGCTTTAAAATTAGTATCTTTGCATTGGTAAATACAAC # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATAATGTGTTACTCCTT # Right flank : TCGTCCACTTTATGCCCTTGTAGTTCCTGTGTTGTGATTAGCTTTAAAATTAACGTGAGTTCGATATAAGAAAGTTGTTTTAAAAGTTGTAGGAGTGGAGTATTTTTTGTACCTTTATACTTGTAAATAAAAGAGTTACAAACAAATACCCACTCCTATGACTGATACAAATTTAATAGAAATATTCTGTATATTCGACGATTTTTGCAAGTATTTTACTCCTG # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGATTAGCTTTAAAATTAGTATCTTTGCATTGGTAAATACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.34%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.10,-0.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [20.0-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0.27 Confidence: LOW] # Array family : NA // Array 1 49083-49906 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAEZ01000017.1 Prevotella intermedia ATCC 25611 = DSM 20706 strain ATCC 25611 B129DRAFT_scaffold_13.14_C, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 49083 36 94.4 30 .......G.G.......................... GTGGCGGCGTTAGCATTAATATATTACACC 49149 36 100.0 29 .................................... TTACTCAGGTAGAATTATTCAAGGTATAT 49214 36 100.0 30 .................................... GCAGCCAATTTTGAAATCAAACACAATGGC 49280 36 100.0 30 .................................... AAAGAAGCGTAACTCTCTTTTCAAAAGCTC 49346 36 100.0 30 .................................... ACAAAAGAACAACTAAAAAAAAGCGTTGAA 49412 36 100.0 30 .................................... TTAACCGATAGAGAGTTATTCTTACTCAGA 49478 36 100.0 29 .................................... CAATCGGTAGCTATTGCACCGTCTTAGGT 49543 36 100.0 30 .................................... TTACAGTATGCTCAAGAAATGGGTTATGAG 49609 36 97.2 30 ...................T................ TGTATTGCAGAACCGACACTTGCGGGTGCA 49675 36 97.2 30 ...................T................ CAAAACGAACTTTTAAATATAAAATGTCAT 49741 36 94.4 29 .......G.G.......................... CTTTTGCAGGTGGTATGATAAGTTTTTTA 49806 36 100.0 29 .................................... TTGAAAATAAAAAACTTAAATTATTAATC 49871 36 97.2 0 .................................C.. | ========== ====== ====== ====== ==================================== ============================== ================== 13 36 98.5 30 GTTGTTTTTACCTTGCAAACAGCAGGCAGATGCAAC # Left flank : GATAACGATATGAGAAAACATCTTATCTTGCTCTGTACAGCGGCTTTCCTGTCGTCGCTGCACATCAACCGAAGCCAACAGAACCGAACGAGCCACCGCATCGAGCCGATGCAAAAGCCCCAACCACCCTTGCCGATGTCGCACTATCGGCAAAGCCGCCCTTGTGCTGCCGTCCGAATCCACGCCACAACCTCTACACTTTCCACGACGTAAAACCACTCCTATTTTGTAAAGATAATTCCATAGAAAAACCATAATTTCGATTTTACATTCCAAAAGCGGCTCTTTTGCAACGCAAAAGAGCCGCTTTTACCGTGTAAAACCTACGCTTTCGCAATGCAAAACAATAGGTTTTACAATGTGCTGATAACGAGATAGTTACGCAATAGTTTTGCTTGTGAAAAATATTTACACCTTTCTCGCCTTTTTTCACCCCTTAAAAGGCGTGTTCCCCCTTTCATTTTTACTTCCCTCAGTTCCATTCCCTTGCTTGTTAATAA # Right flank : CCGCACCTAACCTAACTGTCTGATTCTTATATGTTTTGTTTCTTTCTTTTCCACCAGTATTTTTTTCCTTTCTTATTATGGTTATATAAATTTCGTTGTTGTAAATCTATATCTTTTCTGATTTGTATTGAGAGGCTCTGGTTAATTTCTATCATTTCCTTTACAACCTCCCGATTATGTATCATTATCTTCTCATCAGGGTTGTTCTTTTCAGCAAGCAAAAGTTTATGAACAAGGGTTCTATATTTAAATATCAGCGACATAACCTCTTTTGATAGATAGATGCCATTGCCTTTGTTGTATACCTCTTCGGTTAGCTCTTTGAAGAATTGGCGTATATTGGCTTGTCTGAAGTAATAAGTTTTCTCTCCGCCATCCTTAGGCTGTTCCCACACCAGTATGCAGTCGTCATTTTCTGTGTCTGTGGTAAACCTAAGCAATTTATAAATGCTTTGGTGTGCCTTCAGTATAGCTTCATAGTGCGCACGTTTAATGTTCTC # Questionable array : NO Score: 3.19 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTTTTTACCTTGCAAACAGCAGGCAGATGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.70,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA //