Array 1 421228-422841 **** Predicted by CRISPRDetect 2.4 *** >NZ_WSAT01000001.1 Salmonella enterica subsp. enterica serovar Typhimurium strain B2227 NODE_1_length_546005_cov_84.729127, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 421228 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 421289 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 421350 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 421411 29 100.0 32 ............................. GACTGTTTATACCGGATTCCATGCGTTTTCAG 421472 29 100.0 32 ............................. GAATTACTGGCTAACGACGAACTGACAGTTGA 421533 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 421594 29 100.0 32 ............................. GGCTTTGGTGAAGATTTCTGATTTGGTCATTT 421655 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 421716 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 421777 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 421838 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 421899 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 421960 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 422021 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 422082 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 422143 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 422204 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 422265 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 422326 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 422387 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 422448 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 422509 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 422570 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 422631 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 422692 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 422753 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 422814 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 27 29 98.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 438974-439613 **** Predicted by CRISPRDetect 2.4 *** >NZ_WSAT01000001.1 Salmonella enterica subsp. enterica serovar Typhimurium strain B2227 NODE_1_length_546005_cov_84.729127, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 438974 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 439035 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 439096 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 439157 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 439218 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 439279 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 439340 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 439401 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 439462 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 439523 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 439584 29 96.6 0 A............................ | A [439610] ========== ====== ====== ====== ============================= ================================ ================== 11 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //