Array 1 77537-77761 **** Predicted by CRISPRDetect 2.4 *** >NZ_SWNC01000006.1 Clostridium sporogenes strain IFR 18/055 contig00006, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 77537 29 96.6 35 ..............A.............. TTTGTTAGAAAACATTCCTTAAATGTTTTTGTTTG 77601 29 100.0 37 ............................. GTTATGGGGTTAACAGCTGCTAAAGCTGGACAAATGA 77667 29 100.0 37 ............................. TCTTCCAAGAATTTGTATTCATCTCAATACTCTATTA 77733 29 86.2 0 ..............T.A.......G...A | ========== ====== ====== ====== ============================= ===================================== ================== 4 29 95.7 37 TTGAACATTAACATGAGATGTATTTAAAT # Left flank : ATATTTTTAATGTAGGTCATGAGATTATAATAAATCAAGGAAGATTTGTCGGCAGACCTAGTAAAATTAAGGTTTCTATGAGCATTTCTGAAAAAGAAATACTAGTGTCTGGAGAGGTAGCTATTTTGGCAAAGGGAACTATTTTACTATAATAATAAACGTAAAAAATCGCATTATTCAAGAGATTGAATTTGCGATTTTTTATTGGGCAATCCAATTATATTGTAAAGTTAGATGTATTTAAGTAGTAAATATAAATCTGAGATTTAGTGTGAGGTACTTACTCATTTGAGGAAGCGAGAAGGAGTTCTACTAACTGAATTTTTCCAGCCAAAATAAATTTTAAAACCTATTTTGAGCGTTGACATATAAGGCTTATGGTAGGTTTTTATTTTATATTTGTAAAAAAGCAAAACTACTTGGAAAACTTTCTTTAAAATCTTGTGAAATCAATGGTTGTATGATATTCTTAAAAATAAGGAATGGCTATTTTACTATGG # Right flank : AAAACAAATAACGATGAAAGGATAACAAATAATAATTAAGGTAGCTTTTCATTGACAAGGTTTTTCAGCATTTTGAAATTGAAAAATCAATAGCAAATATTATACAGAGAGGGAATCAATTGTAAGCAGCAAAATCTAATTTTATAGTTAGTTTTTTATAGAATTAGATAGTTAAAAAATTAAACATATAAATATGTGTTTATTTTTTATATAAATTTGATATAATATAATAAGAAAAGCTTAGTGTTGGAGCACTAAGCAATCCTTAGAATATTTATTTTGTTTTAGGGCTATTGGATGAATTTAATAATTAAATTTGAGAGATTGAAGCACTATTCTTGGTCGGATGGGTGCTTTTTCTCTTTGCCATTAAGTTCTATGTGAATACCAAGAAATTTAATCTTGATAACTAGTTTGGAAATAAAAAGATTATGTTTTAAAATTAATTTAACAATATAAATTACAACAAAACTTTTTATGGTTAATTCTAGCATATCCAA # Questionable array : NO Score: 5.65 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTGAACATTAACATGAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 2 78665-78891 **** Predicted by CRISPRDetect 2.4 *** >NZ_SWNC01000006.1 Clostridium sporogenes strain IFR 18/055 contig00006, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 78665 30 100.0 35 .............................. CCTTTTTGTAAGCTTGTTATTAATCCATTTTCTAC 78730 30 100.0 36 .............................. TTCTTTTGGCTTTTTCCCTTTGATACTTATTTATTT 78796 30 100.0 36 .............................. AAAGGTACTGGAAATTGGAATGTTTCTATATTATTT 78862 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ==================================== ================== 4 30 100.0 36 GTTGAACATTAACATGAGATGTATTTAAAT # Left flank : GATAACTAGTTTGGAAATAAAAAGATTATGTTTTAAAATTAATTTAACAATATAAATTACAACAAAACTTTTTATGGTTAATTCTAGCATATCCAATACCACCCCCTATTTATAAGTGAAAGACTCACCAATATCCTAGGAGGATAAAATATTCAAAACCCCCGTAGCCATCCACTACGGAATTACTATCCTAACTTGGATATTATATCATAATTATCTATACTAAAAACAGAGGGATTAAATGGTAAATCACATTTCCATTTAGAATATTACGTTTATTTTAGGATAAAAATAACAAATAATTATATAGAATACGCTAATATTTTTCCAGCCAATTTTAACTTATAAGCCTATCTTAGCTTTTGAAATGTAAGGCTTAAGGTAGGTTTCCCTTATATATTTATAAAATATCATAATCGGTTGGAAAATTTTCTTTAAAACCTTGTAAAATCAATGGCTATATGCTATTCTTAAAAATAAGTAATGGTTATTTTACTATG # Right flank : TGTATTTAATACATTTTCTAAAGTATTAGCCATATGTTGAATAATAAGAATCATTAAAAGTCTTAGAATAATCTAAGGCTTTTATTTTATGCGAAGTTTTAGAATGGAATATGATGAGTAATTAACTTATTATTAATAAAAATAATAATATTTTTAAAATATAAGTAGAATAATCAGTTATATTAACTAAACGGTGTATGGTATAATATAGATAAATTTGTATAAAGAGGTGTATAAATGGAATTTTGGGAACTGATTGCAACAGTGATGTTAAAAAAAGACATATATTTTGAAGATTGTGGATATATAATAGGGAAAAACATAAATAAAAGTATGCTTTTGGATAACGATTTAAAAGAAATACATCCAAAGAAACAGTATAAAAATTATGTGTTTAATAGTTTTTATCCTATAGAAAGAGATAAATTTTATAAAAAAGATAGGTTGTATATTTTTAATATTAGGGGATTAAGTAAAGAATTTATAGATAAAATAGAAAC # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACATTAACATGAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.50,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [75.0-80.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 3 93331-93625 **** Predicted by CRISPRDetect 2.4 *** >NZ_SWNC01000006.1 Clostridium sporogenes strain IFR 18/055 contig00006, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 93331 30 100.0 37 .............................. TGAAATTACCCCCTACATATAATATTTTTCTTGAAAA 93398 30 100.0 34 .............................. TATAATTAGATATTTGTATGAAACAATCTTTATC 93462 30 100.0 37 .............................. CCTTTATATCGTGGTTTCCTGGTTGTATAGCTTTCTA 93529 30 96.7 37 ........G..................... GAAGTTACCACAGAGTTTAGTAATAAAAGAATAGAAA 93596 30 80.0 0 ...A...........GA...A.......GC | ========== ====== ====== ====== ============================== ===================================== ================== 5 30 95.3 36 GTTGAACAATAACATAGGATGTATTTAAAT # Left flank : TGAAGGTTTTGTCTTAAATACAAATGGTGAAGAATCAATTATTAATGCTGATAGTGCTGTTGTAGCTATTGGATATTTATCTGAAAATGATCTGTATAACCAGGTTAGATTTGATATTCCAAATGCAAGACTAATTGGAGATGCTAATAAAGTTCAAAATATTATGTATGCTATTTGGAGTGCATATGAAGTAGCTAAAAATATTTAAATATACCTTTGCAAAAAACTAGAATGGGTTAATATCCATATCTAGTTTTTGCTCTTTACTGAAATTCTATAAGTATATGAGTGTTTGTTATGTACTACTTATGTATATTTAAAGTTTTCCAAGTGAATTCAAATTCAAAGCCTATTCTAAGCATTGATATATAAGGATTAGAATAGGTTTTTATTATGTATTTTTTTAAAAAGCAAAATCACTTGGAAAAATTTCTTTAAAACCTTGTAAAATCAATGGGTATATGATATTCTTGTAAATAAGGAATGGCTATTTTACTATG # Right flank : CATGGAACCCAAACCTTTGATTTATCGTGAGTGGCTTACTCTTTAGAGAATAAGGGAAGAAAGAGTTTCATTAATGAATATAGTTTATATCTTATATCTAATTAAATTTTTCCAAGTGAATTTAAAATTAAAATCTATTCGGGCTATTGAAATGCAAGGCTTAGAATAGATTTTTATTATGTATTTATGAAAAAACAAAATCACTTGGAAAACTTTCTACAAAACCTTGTAAAATCAATGGGTATATGATATTCTTAAAAATAAGGAATGGCTATTTTGCTATGGTTGAACAATAACATAAGATGTATTTAAATGCCTTTACCCCAGTATTAATAAAAATTAATACTAAAGTTGAACAATAACATAAGATGTATTTAAATCTAAATAGCTTCTGCTATCGGCTCTGGCTTTGACGCGTTGAACAATAACATAAGATGTATTTAAATGCCTTATCAACTATGCCATTGTTATTTTTGTCATAAAGTTGAACAATAACATAA # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACAATAACATAGGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0 Confidence: HIGH] # Array family : NA // Array 4 93909-94270 **** Predicted by CRISPRDetect 2.4 *** >NZ_SWNC01000006.1 Clostridium sporogenes strain IFR 18/055 contig00006, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 93909 30 100.0 36 .............................. GCCTTTACCCCAGTATTAATAAAAATTAATACTAAA 93975 30 100.0 36 .............................. CTAAATAGCTTCTGCTATCGGCTCTGGCTTTGACGC 94041 30 100.0 37 .............................. GCCTTATCAACTATGCCATTGTTATTTTTGTCATAAA 94108 30 100.0 36 .............................. ATAATATTAATACTTAGATTATTAACAGCTATTGCC 94174 30 100.0 37 .............................. AACTAATAAATATGAAAGGATTATAGCGGATTTAGTT 94241 30 83.3 0 A..A....T...................GC | ========== ====== ====== ====== ============================== ===================================== ================== 6 30 97.2 37 GTTGAACAATAACATAAGATGTATTTAAAT # Left flank : ACATAGGATGTATTTAAATTATAATTAGATATTTGTATGAAACAATCTTTATCGTTGAACAATAACATAGGATGTATTTAAATCCTTTATATCGTGGTTTCCTGGTTGTATAGCTTTCTAGTTGAACAGTAACATAGGATGTATTTAAATGAAGTTACCACAGAGTTTAGTAATAAAAGAATAGAAAGTTAAACAATAACATGAGATATATTTAAGCATGGAACCCAAACCTTTGATTTATCGTGAGTGGCTTACTCTTTAGAGAATAAGGGAAGAAAGAGTTTCATTAATGAATATAGTTTATATCTTATATCTAATTAAATTTTTCCAAGTGAATTTAAAATTAAAATCTATTCGGGCTATTGAAATGCAAGGCTTAGAATAGATTTTTATTATGTATTTATGAAAAAACAAAATCACTTGGAAAACTTTCTACAAAACCTTGTAAAATCAATGGGTATATGATATTCTTAAAAATAAGGAATGGCTATTTTGCTATG # Right flank : CAGAGAACCTAACTTTGCGATTTGGAGTAAGTTGTTTATTTCCTGTAGAGGAGAAGTATGAGTCTCATTAATGAGCATAGTACATATATTCATATCTAATTAAATTTTTCCAAGTGAATTTAAATTTAAAACCTATTCTAGCCATCGATATGTAAGGATTAGGGTAGGTTTTTATTATATATTTATGAAAAATAAGAATCGGTTGGGAAAGTTTCTGTAAAACCTTATAAAATCAATGGGTATATGATATTCTTAGAAATAAGGAATGGTTATTTTACTATGGTTGAACATTAACATGAGATGTATTTAAATTAATTAACTGTTTTAGAAGGTGTGTGTACACTTCTGTTGAACATTAACATGAGATGTATTTAAATTGTCCTAAAGTATCTACTTGTTTTTGTAATTCTATGTTGAACAATAACATAAGATGTATTTAAATTGAAGTGCTCCTCTTAACTTTGTAGCCAATACTATTTGTTGAACAGTAACATAGGATG # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACAATAACATAAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 5 95473-95896 **** Predicted by CRISPRDetect 2.4 *** >NZ_SWNC01000006.1 Clostridium sporogenes strain IFR 18/055 contig00006, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ==================================== ================== 95473 31 93.5 33 G........G..................... GTAAATTCAACCGCTAAAACATCTGCGATTTTA 95537 31 96.8 35 .........G..................... TATTTAAGTTCTGTTCCCCTTAGTGTTATAGTAGT 95603 31 100.0 33 ............................... TGGTAAATTAGAATGGGGAAGTCCTATTGTACC 95667 31 100.0 36 ............................... GGCACTAATTTTACACTTTTTAATCCTGCTATATTT 95734 31 90.3 35 .......T.G......G.............. TGTATTTGGTTAATCATTTCCGAGGTTTTTATAAA 95800 31 93.5 35 .....G...T..................... TCCGTTCTAACATTTTTATTATCACATTTATGGCC 95866 31 80.6 0 G........G......G......GC....G. | ========== ====== ====== ====== =============================== ==================================== ================== 7 31 93.5 35 AGTTGAACAATAACATAAGATGTATTTAAAT # Left flank : GGATTAGAATAGGTTTTTATTATAAATTTTTAAAAAGCAAAATCACTTGGAAAACTTTTGCGAAATCTTGTAAAATCAATGAGTATATGACATTCTTAGAAATGAGGAATGGCTATTTTACTATGGTTGAACAGTAACATAGGATGTATTTAAATCCTTTATCTGTTTCTTTTTTAAGTTGTAATGGACATGTTGAACAATAACATGAGATGTATTTAAGCAGGGAACGCAAATTTACAATTTGGTGTGAGTCGCTTACTCCTTAGAGGTAACGAGAAGGAGTTTTATTAATGAACATAGTGTATATCTTATATCTAATTAAAGTTTTCCAAGTGAATTAAAAATTAAAATTTATTCTAGTTATTGATATGCGAGGCTTAGGATAGGTTTTTGTTATGTATTTTTGAAAAATCAAAATCACCTGGAAAAATCTTTATGAAACCTTGTAAAATCAATAGGTATATGTTATTCTTGAAAATAAGGAATGGCTATTTTGCTAT # Right flank : TAGAGAACCCAAAGTTGCAATTTGGAGTGATTTGTTTACTTATTGTAGGAGAGAAGTAGGAGATTTATTAATTTAATTTTTCCAGGTACAATAAATTTATAAACTTATTCAAGTCATTGATATATAAGGATTAGGATAGGGTTTTGTTATGCCTTTATAAAAAATGGGAATAGGTTAGAAAATTTTATTTAAAACATTGTAAAATCAATGGTTATATGATATTCTTGAAAATAAGGAATGGCTGTTTTGCTATAGTTGAACATTAACATAAGATGTATTTAAATGTATATATAGTAAAGTTATCTTCTTTACAATCAATAGTTGAACAATAACATAAGATGTATTTAAGCAGGGAACCCAAATTTACAATTTGGTGTGAGTCGCTTACTCCTTAGAGGCAACGATAAGGAGTTTCATAAATTTAATTTTTCCAAGTGAATTTAAATTCAAAACCTATTCTAAACATTGATATATAAGGATTAGAATAGGTTTTTATTATG # Questionable array : NO Score: 5.50 # Score Detail : 1:0, 2:3, 3:0, 4:0.68, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.56, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGTTGAACAATAACATAAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.65%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [3-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0 Confidence: HIGH] # Array family : NA // Array 6 96499-96659 **** Predicted by CRISPRDetect 2.4 *** >NZ_SWNC01000006.1 Clostridium sporogenes strain IFR 18/055 contig00006, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 96499 30 100.0 35 .............................. TCATTTGTAACCCAACTTATAAAACTAGCTTTCCT 96564 30 100.0 36 .............................. ACTGTTCCATCATCTATACCTTCTCTAAAGCCTTTC 96630 30 93.3 0 ............................TC | ========== ====== ====== ====== ============================== ==================================== ================== 3 30 97.8 36 ATTGAACAATAACATAAGATGTATTTAAAT # Left flank : CTTATTCAAGTCATTGATATATAAGGATTAGGATAGGGTTTTGTTATGCCTTTATAAAAAATGGGAATAGGTTAGAAAATTTTATTTAAAACATTGTAAAATCAATGGTTATATGATATTCTTGAAAATAAGGAATGGCTGTTTTGCTATAGTTGAACATTAACATAAGATGTATTTAAATGTATATATAGTAAAGTTATCTTCTTTACAATCAATAGTTGAACAATAACATAAGATGTATTTAAGCAGGGAACCCAAATTTACAATTTGGTGTGAGTCGCTTACTCCTTAGAGGCAACGATAAGGAGTTTCATAAATTTAATTTTTCCAAGTGAATTTAAATTCAAAACCTATTCTAAACATTGATATATAAGGATTAGAATAGGTTTTTATTATGTATTTTTAAAAAAGCAAAATCACTTGGAAAGATTTCTACAAAACCTTGTAAAATCAATAGTTATATGATATTCTTAGAAATAAGGAATGGCTATTTTACTATG # Right flank : CAGGGAAGCCAAATCTCTGATTTACCGTCTTACTCCTTCGAAAAATAGGAGAAGGAATTTTATATCTAATTAAATTTTTCCAGGTGAATTTAATTTTAAAACCTATTCTAGTCATTGAAATATAAGGATTAGAATAGGTTTTTATTACGAACTTTTTTAAAAGCAAAATCACTTGGAAAACTTTCTACAAAACCTTGTAAAATCAATGGGTGTATGATATTCTTAGAAATAAGGAATGGCTATTTTAGTATGGTTGAACATTAACATGAGATGTATTTAAACGATTCCATCGAAGTTAATCCTAGTTGGTTAACTATAGGTTGAACATTAACATGAGATGTATTTAAACAATTACATCTTAATTATAAAATATTTTTTAATATTGTTGAACATTAACATGAGATGTATTTAAACGGACAAGGCGGCTGCGGAACAACAAGTTTTGCTAGTTGAACATTAACATGAGATGTATTTAAACATACAATTGTTAAAGGATTGTT # Questionable array : NO Score: 5.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGAACAATAACATAAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:83.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0 Confidence: HIGH] # Array family : NA // Array 7 96911-97398 **** Predicted by CRISPRDetect 2.4 *** >NZ_SWNC01000006.1 Clostridium sporogenes strain IFR 18/055 contig00006, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 96911 30 100.0 37 .............................. GATTCCATCGAAGTTAATCCTAGTTGGTTAACTATAG 96978 30 100.0 35 .............................. AATTACATCTTAATTATAAAATATTTTTTAATATT 97043 30 100.0 34 .............................. GGACAAGGCGGCTGCGGAACAACAAGTTTTGCTA 97107 30 100.0 36 .............................. ATACAATTGTTAAAGGATTGTTGGGGTGGTTATTCG 97173 30 100.0 34 .............................. CTATAACCTTTAAAATTATTATGATATTGTGTGT 97237 30 100.0 36 .............................. TCTTGTTGCTCTATTCTACTTTTTATTTTTTTATTA 97303 30 100.0 36 .............................. AGATTATACATAGTTTGTTCTTTTTTATGTTGTTCT 97369 30 93.3 0 .......................C....G. | ========== ====== ====== ====== ============================== ===================================== ================== 8 30 99.2 36 GTTGAACATTAACATGAGATGTATTTAAAC # Left flank : AAAATCACTTGGAAAGATTTCTACAAAACCTTGTAAAATCAATAGTTATATGATATTCTTAGAAATAAGGAATGGCTATTTTACTATGATTGAACAATAACATAAGATGTATTTAAATTCATTTGTAACCCAACTTATAAAACTAGCTTTCCTATTGAACAATAACATAAGATGTATTTAAATACTGTTCCATCATCTATACCTTCTCTAAAGCCTTTCATTGAACAATAACATAAGATGTATTTAATCAGGGAAGCCAAATCTCTGATTTACCGTCTTACTCCTTCGAAAAATAGGAGAAGGAATTTTATATCTAATTAAATTTTTCCAGGTGAATTTAATTTTAAAACCTATTCTAGTCATTGAAATATAAGGATTAGAATAGGTTTTTATTACGAACTTTTTTAAAAGCAAAATCACTTGGAAAACTTTCTACAAAACCTTGTAAAATCAATGGGTGTATGATATTCTTAGAAATAAGGAATGGCTATTTTAGTATG # Right flank : CAAGAAATGCAATCATCTGATTTAGAATAATCATTTATACATGGCAATAATTTTTTGCTTTATTACTTGTTGAGTTAAATTGTGGGATTTTATTGACTAAAATATTTTTAAAATATAGTTTTAATTTTGGTTGTGCTTTAAAGTGGTGTTGGAATTTTAAACCCCATTAAAAGAAGTTAAATATTTTCTTTTAATGGGGTTTATATAAATTGTAAGATACTAATTATTTAAAAATTTATTTAATGAATCATTATCTTTAAATAAGTTTTTTAAGTTTCCATATTTTTGTTCTAAATTTTTTCTATCATATTTATAGGATTCTTCTCCTATATTGTTTACATTAAACTTAATAATTTCAGCGTTTGGTATAAGAGATAATAATACTACCGCATTCTTTTCTAAAAGCTTGTCAGCTTTTTTGTCACTCCAAAATTTATTATAATTTTCTTCACCTAAATTTTCATTTGCTTTATAGTTAACAGTTATTTCATATGGCTCTT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACATTAACATGAGATGTATTTAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.50,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 8 103916-104273 **** Predicted by CRISPRDetect 2.4 *** >NZ_SWNC01000006.1 Clostridium sporogenes strain IFR 18/055 contig00006, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 103916 29 100.0 37 ............................. CACTTATAGATGAAAAAGTATTAATTTTGCCATAGTT 103982 29 100.0 37 ............................. CTAATTTAAAATCTCCTTTTAATTTTATTCATATTTT 104048 29 100.0 36 ............................. CAACATTACTTCATCAATAAAGCCTTTTTCTTTTGC 104113 29 96.6 38 ...............A............. CTATTCCACATGCTTTTCATTCAAATCATTTATAGAAG 104180 29 93.1 36 ........G......A............. TTTCCAATCTGATATATTTTCTTTTTTTCTCCAAGG 104245 29 89.7 0 A..............AG............ | ========== ====== ====== ====== ============================= ====================================== ================== 6 29 96.6 37 GTTGAACATTAACATGAGATGTATTTAAA # Left flank : AAAAGCCTACATTCATGTGTTTACTTTGTTTTTTGTAGTAAATATTTATGATATGATTGTTCTAGATATAGGTCTTTTTTGTCACAGTAAAAAAACTAGAATACCTGGTACAGAAGATATGGATAAAGAATATAGAAATCCATGGCATCATATAAAAGGAGCTGGTATTGGAACTATAATAGGTGCTGTAGTAGCATTATTATCTGGAGGAATGGTTCATTTCATATCAATAATATAGTATTTAAGCAGGGAACCCAAATCTGTGATTTGGCGTGAGTCGCTTAATCCTTCAAGAAGAGGAGAAGGAGTTTCATGAATTGAATTTTTCCAGGCGTAACAAATTTTAAAACCTATTCTAGTCATTGAAATATAAGGCTTAGGATAGGTTTTTGTTTTGTATTTATAAAAAAAAGTAATCACTTGGAAAATTTTCTTTCAAACCTTGTAAAATCAATGGTTGTATGATATTCTTAAAAATAAGGAATGGCTATTTTACTATG # Right flank : ATAAATTAAAATCCGTGATTTTTTTCCTTCAAAGTTGTTTAGTTTTTAGAGCAGCGTTGATAATATATCAACTTTTAAGAGAAGTCATTTCTGACTTCCCTTAAGTGGTATTTTATTTAATTGTATAAAGTACATTAGTTAAAACTTATTTTTTCAAATGTACCCTTTTCTATGTGTAATTCAATATCAATATCTGCTTTTTTATAACCTACTAATTTTATACGATTATTACCTTTTTTTATTGGTAAAGTTAATGATGTTGTTCCTTTCATAGTGGCTTTATCTGTATTTTCTACAAGATTAACAATCGTATTGTCAGGAGATATTAAAACAATTTTTGCTTTTCCACTTTTTACTGATAAGATATATGGAACTTTCAAATCAAAATCAGAACTACTTTTATATGTCCAAATAGTTCCACTTCCACTTAATTTCAACTTTCCTTTATATATTCCAGATTCTATGATTTCATCACTTTTATCTAATCCAAAAGTATCATA # Questionable array : NO Score: 6.09 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACATTAACATGAGATGTATTTAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.50,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA //