Array 1 492760-494181 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAASUI010000002.1 Listeria cossartiae subsp. cossartiae strain FSL L7-1447 NODE_2_length_499068_cov_51.318787, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 492760 36 100.0 30 .................................... ACGTCCCTCGTCGATAGCTTTAACCATGCG 492826 36 100.0 30 .................................... TCATCACTTATGTTTTTGTAAGAAATGAAC 492892 36 100.0 30 .................................... TTAAAAATTCGATTTGAAGTGCCTGTTGAG 492958 36 100.0 30 .................................... TGAAATATTACATGCAATCTTTTATGAATC 493024 36 100.0 30 .................................... GCCCATCTAGGCTTAAACGCCCCTCGTCAA 493090 36 100.0 30 .................................... TTAAGTATCGGTTGTATGACACAACTAATT 493156 36 100.0 30 .................................... CCGTAATTAACGAGGGCGACCCTGCTGCCT 493222 36 100.0 30 .................................... ATTCTAGGAAGTCTACCAGAGACGAGAAAA 493288 36 100.0 30 .................................... TGGAAATAGATTATTTAAAACGCTTCTTTC 493354 36 100.0 30 .................................... TCATTCTCCTTCACGTGTTGCGGTTGAGCT 493420 36 100.0 30 .................................... CTCCTTTAATTAATCTCCCTCGATAAGTAT 493486 36 100.0 30 .................................... GTTAATAAAAGTTTTTAAATATGACGATAA 493552 36 100.0 30 .................................... TTTCATCATTTGAACTTATCCAGTCTAATA 493618 36 100.0 30 .................................... CTGGCTATACAATCTTAAAAAGAGCGAAGA 493684 36 100.0 30 .................................... CGGCACGTCAAAACGGTTGGAAAGTGATCA 493750 36 100.0 30 .................................... AAAAAAGTTGGTGCTGTGGCGCATGTTCCT 493816 36 100.0 30 .................................... CTGATGATATGCCTTGGCCACGTTCAAATG 493882 36 100.0 30 .................................... TTGACTAATGCGCTTCTTGAAATTGTGTCC 493948 36 100.0 30 .................................... TCCATTTGCTTCGATTTTTTTCCGGATTAA 494014 36 100.0 30 .................................... TAAAAACAGCCATTCGCAACTAATTGAGCA 494080 36 100.0 30 .................................... TCTCCGCCGCCATTTCGGTGTAGCAGGTGC 494146 36 77.8 0 .........................A.A..TGTCTA | ========== ====== ====== ====== ==================================== ============================== ================== 22 36 99.0 30 GTTTTAGAGCTATGTTATTTTGAATGCTAACAAAAC # Left flank : TTGATAAGTTAACTGCGACAATTAGCGAGTTAATAGGTTACGAGCTATTGGAGCATGAACTAGATTTAGAAGAAGATGAAATCACGGTTATTGAATTATTTAAAGCTTTAGGAATAAAAATAGAAACTAAAAGTGATACAATTTTTGAGAAATTAATTGAAATTGTACAAGTCTATAAATATTTATCAAAGAAAAAATTGTTAGTTTTTATTAATGTATGTGCTTATCTTACAAAGGAAGAGTTGGTAGAATTAAGACGGTATATTTCTTTGTATCAAGTGAAAGTTTTGTTTATTGAACCTAGAAAAACAGACGGCTTTTCGCAGGTTATTCTGGATTCGGATTATTTTCTGCATGTGGAAAATGGTGTTTAAGGACCGGACGTTCTTTGAAAATAAAATATAGTTTAATTAATTTATTAAAGCAGCATTCAAAATTGAAATCTTGCTATGGATAAGTAGCGCGATTACGGAATCTTGGAGGATAAAAAATTCTACGAG # Right flank : AAGAAACAAATGTTTTCATAAAACAGTTCTTAGTAGATTTTAAAAATGACTACAAAAGTTTAAAAAGGAGACCACCACATTGAAAAAGTCCTCAATCATTTTTATTTTTTGCGCACTCCTCCTAACAGCATGCTCAACCACCCAAAAACAAACACAAACCACCGAAGCGACAGGCACGATAGAACAAGTAGAAACAGGATCAATTTTAATCAAAGACTTCAAAGAAAAAAACGACGAAACGAACCCAGAATCCAGCATACGTTTCCAAATCGCCAACAAATACTACGACGAAACAGGAAACAAAATAAAACTAACCGAACTAAACAAAAATGACAATGTAAAAATCATTTTAACAAAAAACTTCCCAATCCAAGAAACCTTTCCAGCCCAAATAGACTCAAAATACGTCCAAAAAATCATCCTACTAAATAAATAAAACTCTCTCACCCGCAGAGAGTTTTTTCGTTCCTCAAAAAAATAAAACTAAAACCCTTGCCTTG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTAACAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTATGTTATTTTGAATGCTAACAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.30,-0.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 1 275642-276130 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAASUI010000001.1 Listeria cossartiae subsp. cossartiae strain FSL L7-1447 NODE_1_length_1417199_cov_37.549691, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 275642 29 100.0 36 ............................. GTTGTTAATGAAGAAGGAAAAGGTATTTTGAAATTC 275707 29 100.0 38 ............................. AGTGATTCGCTAAAACCTTTAAAAACTTCAAATCTTAG 275774 29 100.0 37 ............................. GTGACTTATTTTAAAAATATTGACAGAGCCCAGTTGC 275840 29 100.0 37 ............................. GCGGGATAGGTTTCGGTGAAGAAAATCAAGTCTCCTG 275906 29 100.0 36 ............................. ACCGTTACATAGTCGAATGCTTCTTCGCTCGTCATT 275971 29 93.1 39 ......A.......A.............. AATAGACCTAAGTGTGATATGATTTTTTTGAGGGGAAAA 276039 29 89.7 33 .......T....C...A............ CCTGCCATCAGTTGTTTTATTCCTTGCGATTTC 276101 29 79.3 0 AC.....T......A.A......A..... | A [276122] ========== ====== ====== ====== ============================= ======================================= ================== 8 29 95.3 37 GTTTTAGATACTTATTGTGAAATGTAAAT # Left flank : TGCCACCACTTCAGCTGATATTTTACTAGAAAAAGGTGCCGTAGAAGTCATCGCTTGCGCAACCCACTCCGTCATGGCCGGAAACGCAACCGAACGTTTGCAAAGCTCCAATATCAAAGAAGTCATCACATCTGACTCTATCGATCTTCCAGAAGACAAGCAATTCGACAAATTAACAACCATTTCTATCGGCCGTATTTTAGGACGCGCAATCGAAGGCGTTCAAGAAAATCGCTCGTTGCATCCGTTGTTTTAAAGGGTTAATGAAGAAAACAGTAACTTTTAGAGTTGCTGTTTTTTTGTTTTGGTTGTCTGTCGACCTTTGATAGCGTGAAAAACGTTGGGGATTGACAGAAAGTTGGGAATGGTTGGTGTGAGGGGAGTTTGATGGTTTTTGCTTTTAAAAATCATGTAGAGAAGGGTGGGTTTTCGTTGGTTTTTAGTCTGTCGACAGAAATAGGCTTTTGAGGTAAGATGAGGGTAAGAAGAAAAGTTAACGG # Right flank : TGAGATTTGACTTTTAAAATCCTTACTCATCTTCCAACCCGAACCCGACTCAACAAGATTCGGGTTTATTTTTATCCCCCCACGTTAACAATTCCGCAACAAACACATCAAAAACCCCCAATTTCCTCTGAACCTCCAACTACACCACACACTCAACCTATGCTAAACTCAAAGAGAAAGTCAAAACCACATACATAAAAGGAGGATTTAAAATTGAAAAAGACCCTAATCCCAATACTACTCCTAACAATTATCCTGGCAAGCTGCTCCTCTCCAAATGAAAAAGTAACAAAAGACACCAAAATCTCCAAAACTATCACCATCCGAGCAGATTACAACATCCCGAAAAACATGGAAGAACTAGCAAATAACAGCAATTACATAGTCAAAGTAAAGCTGCTGCAAAACAAAGAAATTGGCAAAGACGGCAACACCATTAGCGAAGTGGAAATCTTAACTTCCTACAAAGGCGATCTAGAAAAAGGCGATAAAATAGACAT # Questionable array : NO Score: 6.02 # Score Detail : 1:0, 2:3, 3:0, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGATACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: F [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 2 291080-292368 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAASUI010000001.1 Listeria cossartiae subsp. cossartiae strain FSL L7-1447 NODE_1_length_1417199_cov_37.549691, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ==================================================================== ================== 291080 29 100.0 37 ............................. GCTGGTTATACAATTGATAAAACACCACGTAAAGTAA 291146 29 100.0 35 ............................. CTGCAAATCCACGTCCGGAAAAAGGTGGATGGACT 291210 29 100.0 34 ............................. TATTGTTCTGTAGGTGATGTTTTAAAGATGTTAC 291273 29 100.0 35 ............................. ATTAATCACTTATGTACCATCTTAAGTTCAATAAT 291337 29 100.0 38 ............................. ATGCTTTCAATTTGGTTCAAAATCTTAGAAGGTGAATT 291404 29 100.0 36 ............................. CTCGATAAGATTGTGGAAGCAATATTTAAAGTTGCT 291469 29 100.0 35 ............................. TTTCATTTTAATTATACTCCGTGTTATAATGTTAA 291533 29 100.0 35 ............................. TTTTTAGCACGAACTGTACCATCTGGTGTAACAAT 291597 29 100.0 35 ............................. TAAAAATAAGAATCCCTCTACAAAGCCATTCTCAG 291661 29 100.0 34 ............................. ACCAGTGACCGCAAAGAAGGGCCAATGGAGCTGT 291724 29 100.0 36 ............................. TTAGTATCTAATTCGTGTTAATATTTTTTTAAAGGC 291789 29 100.0 36 ............................. TCGATTTAAACGCATTTACAAATGTCTCTTTTAATC 291854 29 100.0 37 ............................. AAACTTGAAAACAAACGACTATCAAATGCTATATCTT 291920 29 100.0 35 ............................. ACATTATAAACACTAGATGCTACAAAGTCTATGAA 291984 29 100.0 36 ............................. ATAGAATTATCGCAATTGTGGGTAATTCGGCGGAAT 292049 29 100.0 36 ............................. TTTCAAAATACTAAACGCTCGCGACTACGGCATACC 292114 29 100.0 36 ............................. TCTTCTAAAACTAATGTTGGTTCTAAATTAGAGTCT 292179 29 96.6 34 ...........G................. ACAAGAAAGCCTAATCGCTTCATTTCTGAACTCA 292242 29 100.0 68 ............................. CATGCTTCATCATTGCTTGTGTAAATGTAAATCGACCAGGTACAGCAGCTTATCAGTGACCGAACCGG 292339 29 86.2 0 ...............C......CA....C | C [292361] ========== ====== ====== ====== ============================= ==================================================================== ================== 20 29 99.1 37 GTTTTAACTACTTATTATGAAATGTAAAT # Left flank : CATTTAAAATTTGGTGGTGAAGATATGTATGTAATTTTAATTTATGATATTTCAATAGAAAACGGTGGGGCAAAAGTCTGGAGAAATGTATTTAAGATTTGTAAAAAGTACTTAACTCATGTTCAAAAATCAGTTTTTGAAGGTGAAATAACTCCGGCGCTTTTAGTTAAGTTAAGGATGGAGTTAGATAAGTATATTCGAGATGATCAAGATTCAGTAATTGTTTTTTCTAGTAGGCAACAAAGGTGGCTAGAAAAAGAATTTTGGGGATTAACGGATGAAAAAACTTCTAATTTCTTTTGATGTTCTCGGTCTGTCGACCTTTAGTAGTGCGAAAAATAGTGGGGTTCGACAGATTTAGGGAAATCATTGGGGGAGAAAGAGTTTGAAGCTTTTTAGCCGAAATCTGAAGGGATAAGCTATGATTTTTACGCAATTTTTAAGAGGTCGACAAAAATAGTGACCTGAGTTATGATGGGAGTAGGCGTAAAATAGAGCGG # Right flank : CTTCCTCTCAACATTCAAACTCCAAAAATAAAAAAGACCTGGACCCCAATCCAAGTCTTTTCCCATAACACCTAAACCAACAAAACCACAACCAACGCCAAAACCGCCGGCAAGCCCTGTTTCACTAAAATTCCTTTAGAAGAAGTCAGCCCGCCAAACAGCGCTGCCACAACCACACAACTCAAAAAGAAAATCTGCACAGTTTCCGCCATTCCAGCTCCCGCGAAAAATATTCCCCACACAAGCCCTGCCGCAAGAAAGCCATTATAAAGCCCTTGATTCGCAAACAGCGTCTGCACTTTCTTATTCGCAAGTAGTTCCTTCTCCACACCAAATGTCTTGGCTGCGAGTTTGGTATTGGCGAAAAACATTTCTAAAATCATTATGTAAATATGCTCGATCATTACGATGAAGGTTAAAATAAATGCTAAAATGGCCATGAAAAATCCCTCTTTTCTACTTCGAAGTATAGCATAGCTTGTAAATTTTTCGTAAAAATA # Questionable array : NO Score: 6.10 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:-0.10, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTATGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: F [matched GTTTTAACTACTTATTATGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //