Array 1 667301-665584 **** Predicted by CRISPRDetect 2.4 *** >NZ_VTKF01000001.1 Listeria monocytogenes strain FSL L7-0214 NODE_1_length_976264_cov_71.808671, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================== ================== 667300 29 100.0 36 ............................. TCAAATCCACATCAGTAATAACGCGTGAAATTGGAT 667235 29 100.0 34 ............................. TCATTATCATTGATAAATGATTGTGCTTTACGGG 667172 29 100.0 35 ............................. TCGACTTTGAAGACCTTATTTTTCTTCGCTTCCTC 667108 29 100.0 37 ............................. TACATATCGCGCTCCTCTGCTGTTAACGCAAAGTTTG 667042 29 100.0 37 ............................. TCCGCCATCTGCATTGCTAATGTTACAGAAGTAGCAG 666976 29 100.0 35 ............................. TAATCTTCGCGCGGATAAACAACAACCGATTTCCC 666912 29 100.0 36 ............................. TTCAGAGTTGCTTTTTCGTCCCACACGTAACTACTA 666847 29 100.0 34 ............................. CCTCTTCAGCAGCCAATTTGGCTTTTATCTCCGC 666784 29 100.0 36 ............................. GAAGAAGGGGTTATGGAAAAGGAACTAATTATAAAT 666719 29 100.0 36 ............................. GAGACTCAAAAGTTAGTGTTAAAACTAGCGGCTACT 666654 29 100.0 35 ............................. ACAAAATACTTTTCGCAGAATTTTATTGCATAATC 666590 29 100.0 35 ............................. CGCGAACGCTGCAAGTCTTCTTTTTGACGGACAAC 666526 29 100.0 35 ............................. TGTTCTATTCCCTTCCTTCAATACTAAAGCTTTTT 666462 29 100.0 35 ............................. ATACAATGATGTCGAGACTTGAAGAAGGCGGCAAA 666398 29 100.0 36 ............................. TTAAAAAGTAAATTTGACTTTATTTTAATCGATGTT 666333 29 100.0 36 ............................. TCGATAGTCGCACGAATTTGCTTGTTGTTTAGCTCT 666268 29 100.0 35 ............................. GTTGTTTCTTACTCAACCCCAACGCCTGTTTACTC 666204 29 96.6 36 ....................G........ ATTTGTTGGGAAAGAATCAACTTCAAGTTTAGATTT 666139 29 100.0 37 ............................. AGACGAACAGCTAGAAGCATTGCAAGAAAGCGATGCT 666073 29 100.0 37 ............................. CAAGTAACAGGAAAAGGACAAGTATATCTATTAAATA 666007 29 100.0 35 ............................. AGTTCAATCTCGCAACTACTTACAAATTTTTGTAC 665943 29 100.0 37 ............................. ACGATTAAGATTCGCAAAAAGTGAAGTCGCGGATCTA 665877 29 100.0 36 ............................. AATGGTATATTTTGTCAACAGGTTTATCCTATTTAG 665812 29 100.0 40 ............................. CTCACTTCCACCACCTCGCATTCTGTGTTTGTTTCGTTGA 665743 29 100.0 36 ............................. TTTCCATTGCCAATCTGTATAAATTCGCCGTTTTGA 665678 29 100.0 36 ............................. ACTAACAAAGCACCTGTAAAAGCTAATGCAATCGGA 665613 29 93.1 0 .......................C....C | A [665588] ========== ====== ====== ====== ============================= ======================================== ================== 27 29 99.6 36 GTTTTAACTACTTATTATGAAATGTAAAT # Left flank : CATTTAAAATTTGGTGGTGAAGATATGTATGTAATTTTAATTTATGATATTTCAATCGAAAATGGTGGAGCAAAAGTCTGGAGAAATGTATTTAAGATTTGTAAAAAGTACTTAACTCATGTTCAAAAATCAGTTTTTGAAGGTGAAATAACTCCAGCACTTTTAGTTAAGTTAAGGATGGAGTTAGATAAGTATATTCGAGATGATCAAGATTCAGTAATTGTTTTTTCTAGTAGACAACAAAGATGGCTAGAAAAAGAATTTTGGGGATTAACGGATGAAAAGACTTCTAATTTCTTTTGATGTTCTCGGTCTGTCGACCTCTAATAGCGTAAAAAATAGTGGGGTTCGACAGATTTAGGGAAATCATTGGGGTAGAATGTCTTTAAAGGTTTTTAGCAAAAATCCGAAGGGATAAGTTATGATTTTCACCCGATTTTTAAGAGGTCGACAAATATAGTACCCTGAGTTATGATGGGAGTAGGCAGAAAATAAAGCGG # Right flank : TTCCTCTTAAAATTTAAACCCCAAAAATAAAAAAGGCCAGGACCTAAATCCAAGCCTTTTCCTACACTCCTCTAAACCAACAAAACCGCAACCAACGCCAAAACCGCCGGCAAGCCCTGTTTCACCAAAATTCCCTTAGAAGAAGTCGCTCCGCCAAACAGCGCCGCCACAACCACACAACTCAAAAAGAAAATCTGCACAGTTTCCGCAAACCCTGCTCCCGCGAAAAACAATCCCCACACAAGCCCTGCCGCAAGAAAGCCATTATAAAGCCCTTGATTCGCAAATAGTGTCTGTACTTTCTTATTCGCAAGGAGTTCTTTCTCCACACCAAATGTCTTGGCTGCGAGTTTGGTATTGGCGAAAAACATTTCTAAAATCATTATATAAATATGCTCAATCATTACGATGAAGGTTAAAATAAATGCTAAAATGGCCATAAAAAATCCCTCTTTTCTACTTCGAAGTATAGCATAGCTTGTAAATTTTTCGTAAAAATA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTATGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: R [matched GTTTTAACTACTTATTATGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 2 684933-684131 **** Predicted by CRISPRDetect 2.4 *** >NZ_VTKF01000001.1 Listeria monocytogenes strain FSL L7-0214 NODE_1_length_976264_cov_71.808671, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 684932 29 100.0 34 ............................. AACCTTATTGCTTTCGCCTGCTTTGCGTTTTTCA 684869 29 100.0 36 ............................. CTCTTTAGTTGTTGTATTTGCCATTAAAAGCTGTGT 684804 29 96.6 36 ..............A.............. TTTTTTATAATCACCTCGCAGACGCTGAATGTAAGA 684739 29 100.0 34 ............................. ATGTCTCGCCTTCCACTTCTGAAACCGCAGCAGA 684676 29 100.0 36 ............................. TCGGTATAAATACGGCTTATCGCATTTCGGATTTGT 684611 29 100.0 35 ............................. CACAATGACTTAATGCTTTGCCTTCTGTTAATAAA 684547 29 96.6 36 ..............A.............. TAGAATCAACCTTTCAAATAATGAATATAGACTTAG 684482 29 96.6 35 ..............A.............. AGATGTTTCATGGCACTTTAATAGTGCAGCGAATA 684418 29 96.6 35 ..............A.............. TAAAAACCCAGTCCGTGCCCGTATTGAACGCTAGC 684354 29 100.0 35 ............................. TTAATTTTTAAGTGCCAGATTCCCTAAGAATTAGA 684290 29 100.0 36 ............................. CCCGGAAAGTCTGGGCTTAATAAAGAAAAGAATCTT 684225 29 96.6 37 ..............A.............. GAAAAAGCACTTTTCAGTACTCGTTCGTTTTCTTTTT 684159 29 82.8 0 ......A........CA.A....A..... | ========== ====== ====== ====== ============================= ===================================== ================== 13 29 97.4 36 GTTTTAGTTACTTATTGTGAAATGTAAAT # Left flank : CGTCCGTGCCACTACTTCAGCTGACATTTTACTTGAAAAAGGTGCCGTAGAAGTTATCGCTTGCGCAACCCACTCCGTCATGGCTGGAAACGCAACCGAACGCTTACAAAACTCCAATATCAAAGAAGTCATCACATCCGACTCCATCGATCTTCCAGAAGACAAGCAATTCGACAAACTAACAACCATCTCCATCGGACGAATCTTAGGCCGCGCAATCGAAGGCGTACAAGAAAACCGCTCGTTGCATCCGTTGTTTTAAAGAATAAGCAGGAAACAGTAACTTAGTAGAGTTGCTGTTTTTTTTGTGATCTGTCGACCTTGAGTAGTGCGAAAAACACCGGTGATCGACAGAATGTTGTAAGTGGCTGGGGGAAGGGAAGTTTGGCGGTATTTGCTTGGGGAAATCTTCCGGATAAGAGGAGATTTTAGATGTTTTTTGGTAGGTCGACAGAAATAGCTCTTTGAGGTAAGATGGGAGTAAGAAGAAAAGTTAGCGG # Right flank : ACCCTTCATATACACCCTCACCACCATCCATCAAACCAAAAAAAGCGTGACTGCCAAACTCGCAGTCACGCTTTTTCTCAATCATTAAACTCTTTCAAAACATCCTCTTTAATTTCAGTATAATTGGTTACTTCCTCTTTCTCCTCGGAAATGAAATTATATGCTTCCACTTCTCCCAAATTCTCGAAATCGGTAAGAGTAGCGTCTGTTTCTTTCAAGTCTTCATTAAATTTGCCATAGCCCATGCTGATAATCGAACTTAGTTTTTCGCTGTCATGTCCGCCGCGTAAAAATAATGTGTATTCTTGCTCTTGCTCAAGCGCGATATAGTTTTCAATGGATTCATACGCACCTTCATTTAAATACCAAGGTTCTGAAACGTCAATTTTGTCGCCTTTTTTGAAAGTGCCTTTGTAAGTTTCTAAAACTTCGACTTCACTTATAGTGCTGCTATATTCCATTTTTTCTTTATCGTAATCGCCAATTTTCTTGTTTTTCAC # Questionable array : NO Score: 6.09 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.96, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTTACTTATTGTGAAATGTAAAT # Alternate repeat : GTTTTAGTTACTTAATGTGAAATGTAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: R [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //