Array 1 396021-398767 **** Predicted by CRISPRDetect 2.4 *** >NZ_QUQH01000002.1 Listeria monocytogenes strain MOD1_LS119 ID87_2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 396021 36 100.0 30 .................................... GCAATAGACCAGTTAGGTGTCACAGGTGCG 396087 36 100.0 30 .................................... GATAGTAGTATAATAACTGTGCTAATATGG 396153 36 100.0 30 .................................... TTCGTACCATAGTATACACATGCAGGGGCG 396219 36 100.0 30 .................................... CATATAGATGTTTCCTTTCTACTCGTATAT 396285 36 100.0 30 .................................... AAATATTATTCAATGCTGTAACTGTAAAAG 396351 36 100.0 30 .................................... TACTTTTATTGTCTGCTAAGAATACTACTA 396417 36 100.0 30 .................................... ATTGTACAAATTCCAAGTAACTCATCATTA 396483 36 100.0 30 .................................... TTTTTCACGTTTGTACTGTCTCTCCTCGTA 396549 36 100.0 30 .................................... TGTCTGAATGTAGTTAATATCTTCAACTTG 396615 36 100.0 30 .................................... CTTCAGTTTCACCTGTGAATACGCCGTTTA 396681 36 100.0 30 .................................... GCGCTTCAGTTTCAGCATTGGTCTTCTTAG 396747 36 100.0 31 .................................... TCTCTTGCATTTGGTTCTGAATAATCTCGTA 396814 36 100.0 30 .................................... AGAGCAATGTAGTCATTCAGCCAATGCCCT 396880 36 100.0 30 .................................... ATATGGGGGCTTATTGTATGGCTAATATAC 396946 36 100.0 30 .................................... ACGGGGCATTTAATGTTGGCAAGCGCAATT 397012 36 100.0 30 .................................... TCCTCAGATAAGGTTTAGTACGCAAGACTC 397078 36 100.0 30 .................................... TCCACTTCGACGCTGGACGGGCTCTCCTCA 397144 36 100.0 30 .................................... CAATGCTTGGGGCTATGATGGCATGGATAA 397210 36 100.0 30 .................................... CTCTTTTCGATATTCCGGAAGAGGTACTCC 397276 36 100.0 30 .................................... CTTTTGTGTCTTCGGTAGCTTTGTCCATTA 397342 36 100.0 30 .................................... CCAGAGTCGCTTTTTCTTCCGGCCAGTCTG 397408 36 100.0 30 .................................... GTGTGTTATCTATTTGTAGCGTGGGTGTAT 397474 36 100.0 30 .................................... ATATACAATGTCTAAGCTTAATCTTTCGGT 397540 36 100.0 30 .................................... GAAATAATATTGATAATATCGCTCTTGCTA 397606 36 100.0 30 .................................... AGTATTTATTATCTCTATTACTTTTGTATA 397672 36 100.0 30 .................................... CGTATTCAAAAGTATATCCGCTAGCCTCAA 397738 36 100.0 30 .................................... TAGGTTTAGGGAGTAAATTAGCTCCTTTGG 397804 36 100.0 30 .................................... GGTAAAACAAGCATCGGCGAAGCAGTAACA 397870 36 100.0 30 .................................... TCCTAAATCTGAAAACAAAAACTACGAGTT 397936 36 100.0 30 .................................... TATTGGTGCCGCGATTAAAGTGTTTGACTT 398002 36 100.0 30 .................................... TATTGGTGCCGCGATTAAAGTGTTTGACTT 398068 36 100.0 30 .................................... TATTGGTGCCGCGATTAAAGTGTTTGACTT 398134 36 100.0 30 .................................... TATTGGTGCCGCGATTAAAGTGTTTGACTT 398200 36 100.0 30 .................................... AAAGCAATAAATCAGATCATAAAGGAGCCT 398266 36 100.0 30 .................................... CGACGGAAAAATTAGACGACGCTAATGTGC 398332 36 100.0 30 .................................... GGGCAACGATATTTGTAGATAACAGGGAGT 398398 36 100.0 30 .................................... TACGATGTTAAGCGGTGGAGTAGATCAGTA 398464 36 100.0 31 .................................... TATAGTCTGTTTTTTCGTAAGTGAGCAGCGC 398531 36 100.0 30 .................................... TTGGGCAAAATGACCGTAATAAATCCATTC 398597 36 100.0 30 .................................... TTAGCACTTATATAGAAGCCCCGCCCCTAC 398663 36 100.0 30 .................................... AGTGATGGGGAAGAGATTGAACTTATGTTT 398729 36 86.1 0 .............A.....C.....T.A.......G | A,A,C [398754,398760,398763] ========== ====== ====== ====== ==================================== =============================== ================== 42 36 99.7 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : GACAAATTAACCGCGACGATTAGCGAGTTGATAGGTTACGAATTATTGGAGCATGAACTGGATTTAGAAGAAGATGAAATAACGGTCATTGAATTATTCAAAGCTTTAGGAATAAAAATAGAAACAAAAAGCGATACCGTATTTGAGAAGTTAATTGAAATAGTACAAGTCTATAAATATCTATCTAAAAAGAAATTGTTAGTACTTATTAACGTGTGTTCCTATCTTACAGAGGAAGAACTGCTAGAGTTGAGACAGTATATCTCTTTATATCAAGTCAAAGTACTATTTATTGAACCTAGAAAAATAAAAGGATCTCCGCAAGTTACTTTAGATTCTGATTATTTTTTACATGTGGAAAATAGTGTATAAGGTAACTGCTGTTCTTTGAAAACAAAATAAATTTTATGTAAACCATAAAATAGCATTCAAAATTGAAATCTTGCTATGGATGAATGGCGCGATTACGGAATCTTGGAGGAAAGAAAAAATTCTGCGAG # Right flank : GATAAAATGCATCGCAATTACCAAACCATGGTTAAATTTAAAAAGGAGTTAGGCTATCTATATGACACAGTATCACTATCTTGCTTCGAAGTCGCTCTTAGAAAATGATGGGGAAAAGTTCCCTCGTCTTTATATTAGACTTCTTAAATTTGAATTTTGATATGAATGTTGACCAAGACACTAATGAATTGTTTTTCTATTCAATTGATTTGAACTCAGCTTGTAAATGTAAGTAAAGAGAACCTGCCGCTGAAAGGTAATGGGCAAAAAAATTGTTACGAGACTAAAAATTTAAAAATCTTGTATGATTATATTCTAAATACAAGTAAAGATAATGAAACGATTGAACTATATACTGCTTGAAACAGCGAGGAAGATTTCCTGTTTTTGAATAAAACAGAACTGCTGATCTAGAATTTAACTATCGAAAATCTAATTTTAAATGACAGAGAACTATTAATAATTAGAAATGAAAACCGATATAACTTTTAGCACCATTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.30,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [56.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.27 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 156078-154749 **** Predicted by CRISPRDetect 2.4 *** >NZ_QUQH01000005.1 Listeria monocytogenes strain MOD1_LS119 ID87_5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 156077 29 100.0 37 ............................. CAATGCTTAAACCGAGAGCATCAAATTGTTCCCATGC 156011 29 100.0 36 ............................. ATTACAGTACAAGCAAGGGTTATTGAGTTAAATATT 155946 29 100.0 35 ............................. ATTAATGATAAGAGCGGAAAGAAAACTTTCAAGGG 155882 29 100.0 37 ............................. TCCCCCTTAAGATACAAACTCGATTTGACAGGTGCAG 155816 29 100.0 36 ............................. TCGTTTATGACCTTATGAAAGAGTTAACACCTCGAC ATC [155807] 155748 29 100.0 36 ............................. CTTCCTACTTTTTGACATAAAAAATAAGCCGAGTTG 155683 29 100.0 36 ............................. AAGTTCAAAACCTCCCACACCCGCTATGAATAAATT 155618 29 100.0 37 ............................. TTCGTAATTTTACGATTATACTTTTTAGTCAAATTAC 155552 29 100.0 35 ............................. GTAACAAGTAGTGTTATACCTGCAACAATACCAGT 155488 29 100.0 36 ............................. TGGAAATGGGAAGAAAGAAATGCACTGATTGTAGAG 155423 29 100.0 36 ............................. GTCCACATCGACAATAAAAAACACATTGTATCACTT 155358 29 100.0 36 ............................. CTGGTTACTCAACTGGCGACAGTAATACACCTCAAT 155293 29 100.0 34 ............................. TTTGGATAGGTTGTTTCTGATAAATAGGTTCACG 155230 29 100.0 34 ............................. AGAAAAAAAACATCTTTCCAATTTGTTGTTTTGC 155167 29 100.0 37 ............................. ACAAGTGCTAGAACAGAAGTTATAATTTGAACATTAC 155101 29 100.0 34 ............................. AGAAGCGTTAGCGGCATTGTTCGAAAGTAATTTA 155038 29 100.0 36 ............................. TATAAAATATTGCCCAATGTGCGGAAGGAGTTTGGA 154973 29 100.0 37 ............................. AAGAAATCCGGGAAGTTTTGTTCTACAGAGCGAACGG 154907 29 100.0 36 ............................. GTGTAATTCTTAATTCCGTATTGATTCGCTAGTTTT 154842 29 100.0 35 ............................. TTTTGAAATATGAGGACTTAGAAAATGAAAAAAAT 154778 29 93.1 0 .......................C....C | A [154753] ========== ====== ====== ====== ============================= ===================================== ================== 21 29 99.7 36 GTTTTAACTACTTATTATGAAATGTAAAT # Left flank : CATTTAAAATTTGGTGGTGAAGATATGTATGTAATTTTAATTTATGATATTTCAATCGAAAATGGTGGAGCAAAAGTCTGGAGAAATGTATTTAAGATTTGTAAAAAGTACTTAACTCATGTTCAAAAATCAGTTTTTGAAGGTGAAATAACTCCAGCGCTTTTAGTTAAGTTAAGGATGGAGTTAGATAAGTATATTCGAGATGATCAAGATTCAGTAATTGTTTTTTCTAGTAGACAACAAAGATGGCTAGAAAAAGAATTTTGGGGATTAACGGATGAAAAGACTTCTAATTTCTTTTGATGTTCTCGGTCTGTCGACCTTTAGTAGTGCGAAAAATAGTGGGGTTCGACAGATTTAGGGAAATCATTGGGGGAGAAAGAGTTTGAAGTTTTTAAGCGAAAATCTGAAGGGATAAGTTATGATTTTTACGTAATTTTTAAGAGGTCGACAAAAATAGTGACCTGAGTTATGATGGGAGTAGGCGTAAAATAGAGCGG # Right flank : GTCTTCTTAAAATTTAAACCCCAAAAATAAAAAAGGCCAGGACTCAAATCCAAGCCTTTTCCTACACTCCTCTAAACCAACAAAACCACAACCAACGCCAAAACCGCCGGCAAGCCCTGTTTCACCAAAATCCCCTTAGAAGAAGTCGCTCCGCCAAACAGCGCCGCCACAACCACACAACTCAAAAAGAAAATCTGCACAGTCTCCGCCATTCCTGCTCCCGCGAAAAACAATCCCCACACAAGTCCTGCCGCAAGAAAGCCATTATAAAGCCCTTGATTCGCAAATAGTGTCTGTACTTTCTTATTCGCAAGTAGTTCTTTCTCCACACCAAACGTCTTGGCTGCAAGGTTGGTATTGGCGAAAAACATTTCTAAAATCATTATATAAATATGCTCGATCATTACGATGAAGGTTAAAATAAATGCTAAAATGGCCATAAAAAATCCCTCTTTTCTACTCCGAAGTATAGCATAGCTTGTAAATTTTTCGTAAAAATA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTATGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: R [matched GTTTTAACTACTTATTATGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [3-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.5 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //