Array 1 2263374-2267507 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP059571.1 Neisseria bacilliformis strain DSM 23338 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 2263374 36 80.6 30 ACGC......TT.............G.......... CGGTATCAAGCACTAGGCAAACAAAAACCG A,ATT [2263385,2263387] 2263444 36 100.0 30 .................................... TCTGGTAATCCTTCCTGTGTAACGCCCCCG 2263510 36 100.0 30 .................................... TGCATCTTTGGTCGCCATATCAATCAAATG 2263576 36 100.0 30 .................................... CGATTGCAGTAGCGTTGAGAAAACCGTTGT 2263642 36 100.0 30 .................................... TTTGAACAATTCCAACGTTCCGAGCGTTAC 2263708 36 100.0 30 .................................... GTGCGGTCTTTGCCCTTGATGAACTGGATG 2263774 36 100.0 30 .................................... TCTATCACAGAGCGGAATTTTATCTGCCGA 2263840 36 100.0 30 .................................... TATGGCCGCCATGCCCGTCATGGCTTTCGC 2263906 36 100.0 30 .................................... CTGCACGCTGTTTGACCGGCGGCAGTTGGA 2263972 36 97.2 30 ..........T......................... TAAAAGGCAGGCCGTCGCGAACGTACTCCA 2264038 36 100.0 31 .................................... TCAAAAGCCGTTGAGGGATTTGGTCTGATGA 2264105 36 97.2 30 ................................T... AATGAAGTTCAGCTAAGCGCATTCAGGCCG 2264171 36 100.0 30 .................................... CATCAGCAAGGCCATTGCGGCTTTGAGCAA 2264237 36 100.0 30 .................................... TTCCTCTCGAAAAGGCCGTCGGGCGGCTCT 2264303 36 100.0 30 .................................... CATCAGCAAGGCCATTGCGGCTTTGAGCAA 2264369 36 100.0 30 .................................... TTCCTCTCGAAAAGGCCGTCGGGCGGCTCT 2264435 36 100.0 30 .................................... GGCTTTGTTTGTCCAGTGCTTCCAGCGTTT 2264501 36 100.0 30 .................................... CGGAATATGCAGGAATACAACACGGAGGCC 2264567 36 100.0 30 .................................... TGGACATCGTGCCGCTGGACATTCAGACGG 2264633 36 100.0 30 .................................... ATCGCGGAGAAACTCAGGCGGTTCGTTCAG 2264699 36 100.0 30 .................................... AAAGACCTTGCCCCCTTTCTACCCTTGCCC 2264765 36 100.0 30 .................................... CACCTTGTCGGGCGGCCTGGTGATCCAGCA 2264831 36 97.2 30 ...............................T.... GAAAAAGCCATTGGTGTGGGCGTTTTCTAT 2264897 36 100.0 30 .................................... TGAAAAAGGCTTCGCCACAACCACCCAACA 2264963 36 100.0 30 .................................... CGAAAATTCCAAATACCGCGAAAACACTCA 2265029 36 100.0 30 .................................... TTGCTTCGTCGACTATCAAGACCGAGCCTT 2265095 36 100.0 30 .................................... GAAGCTTCCGAATTGCTGCATTGCTGGATG 2265161 36 100.0 30 .................................... CATATAGGCGATTAAAAGCGCGTTTATTCC 2265227 36 100.0 31 .................................... GCACCGCCTGCCAACAGGAAATCGAACGCTA 2265294 36 100.0 30 .................................... CCCGTGTTCGTGAACTCAAAAACTTTTACG 2265360 36 100.0 30 .................................... TCCCCCTTGTCTTTCACGTTCGGGCAGCTT 2265426 36 100.0 30 .................................... CCGAGAAGGAAAACCCATGAGCACTTCCCA 2265492 36 100.0 30 .................................... ACAGATCACGGCCTCTACGCAAAGTCTACG 2265558 36 100.0 30 .................................... AAAAAAAACAGGCGGCCATCACTACCGCCA 2265624 36 100.0 30 .................................... ACTCCCCAACGCCCATCTGCAGCACGCCGC 2265690 36 100.0 30 .................................... GTTCACGAAATCAAGGAGCAGACCGATGGT 2265756 36 100.0 30 .................................... TCATACTTGGAAACATCCCCCGCACACGCA 2265822 36 100.0 30 .................................... GGCTGGGCGAGAAGTACAAACTAAATGGGC 2265888 36 100.0 30 .................................... CACCCCCCGTGCTACCCGCCCGCAAAAGAC 2265954 36 100.0 30 .................................... CGGAATATGCAGGAATACAACACGGAGGAC 2266020 36 100.0 30 .................................... CCGCAAAACCGTAACCGACGCGCTTTCACG 2266086 36 100.0 30 .................................... CAGGACAGCAGGCGTCCGACGGGCAGCCAT 2266152 36 100.0 30 .................................... GAAGTTTACAGCATACATAAGCCCTTTTTG 2266218 36 100.0 30 .................................... AGGAAGGCGGGGATGACGCCGCTGACTTTG 2266284 36 100.0 30 .................................... AAATGCGATAACTTTTAAAAAAGGGTAATA 2266350 36 100.0 30 .................................... AGCTATCACTAAAATCAGTTTTAGTTTCGG 2266416 36 100.0 30 .................................... ATCCGTCAACTCATTATGCGGCAGTTTCAA 2266482 36 100.0 30 .................................... GAAAGAATTGGGTTGGACTGACGAGGACAT 2266548 36 100.0 30 .................................... TTGGGCATGAACAAGTAAAAGGCCAGCGAG 2266614 36 100.0 30 .................................... TTCTGCGGCTGCGCTATCAGACGGCCGTCA 2266680 36 100.0 30 .................................... ATAATTAATGGACTTTTGATAAAGAAAATC 2266746 36 100.0 30 .................................... AAAGCATTGTCCGTTTTGCAAATAAGACAT 2266812 36 100.0 30 .................................... TCGCCTCATCGACTATCAGAACCGAACCTT 2266878 36 100.0 30 .................................... TTTAGAAACCACAGCACCGAAACAAATCGA 2266944 36 100.0 30 .................................... TGCACGGCAAGAAAAGTGCGGATGACTTGC 2267010 36 100.0 30 .................................... TGGGTGGCGGCTGCGGTGAATATCAATACG 2267076 36 100.0 30 .................................... TGGGAAAAAGCACTGTGCAGATTTGCACAA 2267142 36 100.0 30 .................................... TTTAGAAACAACAGCCCCGAAACAAATCGA 2267208 36 100.0 30 .................................... CAATTTGAGTGGCGTTTAAGAAACCAGACT 2267274 36 100.0 30 .................................... AGGGGCGCAGAGCTGTTCCGCCACGACACT 2267340 36 100.0 30 .................................... CGAATAATCGATCCCGCGCAGCCCCACCAG 2267406 36 100.0 30 .................................... GTTTTTCCTGAACGACGACCTGCGGGGACT 2267472 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 63 36 99.6 30 GTTGTAGCTTCCTCTCTTATCTCGTAGTGTTACAAT # Left flank : GGTGCGAGCAAGGTTTGATGACCTGCCATTCGAAAAACTCGGCCGCACTTTTGTGCAGTTCTGTCCGGCAGAATGGCGACGTACAGTTCGCGCGAGAAGTTGCAAATGGCAACAAACAGATAATCGAGTTTATCGGTGGCTCTCCGCCCTTTGAGCAGCGGCAGCCATTCGGTGGTATCCACATGAACTTGTTGTAGCGTTTGGCTTGCTTTTTGAGCTTCTATTGAATGGCGCGTTCCACTTTGGTCAAACGGCGCATTCCGTAATACGCTTGCTTACAGCGGTTGTTGGTGCTGTTTTGCGGTGCGAGCAACCTGCCGCGTGCGGCTTTGAGCACGCGGTAGATGGTCTGACGGCTAACCATGTAACGGCGGGCGAGTGAGGTAACGCTTTCTTTGTTCTGTGTGTAGGCCAGCCAGATGACTTGGCGGTGGTGCGGGGTAAGGCGTGTGTTTTTGTGGATCTTCATTTACGGTATTGTCCTTAGAATACTGTAAACA # Right flank : TCCAAACAGGATAAATCATTGTTAAAAAATGGTTTATCCTGTTTTCTTTATCTAAAAAACACATTCAAAACAGCAAAAGCTGGTCTGCATTTACCTTTTTTTCACGAATTTGCCGCGTGCCCACCAACACGTCCATGCTCGCATATTGCTTCTCCGTTATCGTCAAACAGCGTATTGAGCCCTCCGTTGGCAGTGCTGCACACAATCGGTTGTAGTGTTTTTGCAACGAATCTCTACCACGCACGATGCGGGTGTAAACAGACAATTGCAACATTAGGTAACCATCTTGTTTTAAAAAATGTCTGAATTGGTTCGCTGCCCGTCGTTTCGCTTCGGTGGTAACGGGTAAATCAAACAATACGATTAGTCGCATAAATTTTGCCTCACTCATAATAATGTACTTTCAATTCTTGCATTTGCGGTAATTTTAAGATTTTGCTGCCGCTTTCTGATAAGGCAGCCTGAAAAGACTGCACGGTTCTATCGATGGCAGCAAGAAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTTCCTCTCTTATCTCGTAGTGTTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: F [matched GTTGTAGCTTCCTCTCTTATCTCGTAGTGTTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.68 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //