Array 1 61476-59617 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGKKF010000031.1 Escherichia coli strain CJXMCRH520 H5_FDSW210082172-1r_1.clean_(paired)_contig_31, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 61475 29 96.6 32 ............C................ GTCAACTGGCACCACAAAATGATGGCGTCGAA 61414 29 96.6 32 ............C................ TGTTTCGGTTATCAGTAATCCGGTAAACGCCG 61353 29 93.1 32 ............C...............C ACAACATCAGGATTGCGATCCGTAGCGTTACC 61292 29 93.1 32 ............C...............T GTACCGTGGCAATAATTCTCTTGAGAGCATAA 61231 29 96.6 32 ............C................ GCGGACGGCAAAACAATCGGGAGTCTGGATAA 61170 29 96.6 32 ............C................ ATTTTTACTGAAATGACGGCTCGATTTACAGC 61109 29 96.6 32 ............C................ CAACGGAGGCCCAGGGCGTGCCGGTTTCGAAA 61048 29 96.6 32 ............C................ GTTAAAAACCATTTACGGAGATAATAAATAAC 60987 29 96.6 32 ............C................ TGAACACACTTCCAAAATTCAACGGTGACGCC 60926 29 100.0 32 ............................. CCGCTTCCCCGCTGGCTGTGTCTCGTCTCGTT 60865 29 100.0 32 ............................. ATTGCATTAAAGAGATCATGCGCGCCCAAAAT 60804 29 100.0 32 ............................. TCAAAAGATGAAATTTTGCAAATCAGGGCAGC 60743 29 100.0 32 ............................. TATTCGGTCACTCCCACAAATTTCCCAGGCCA 60682 29 100.0 32 ............................. AGGGCTGGTGGATTCGGGTAACTGGTTTGCTG 60621 29 100.0 32 ............................. TTGCGGGCGAAAGTGTCGATTCTGACACGATA 60560 29 100.0 32 ............................. GATTTACAAGAGGAACGATCATGACGGGTTTA 60499 29 100.0 32 ............................. GAAAATGCTCTTTGAAAATGCAATGCCCCGCG 60438 29 100.0 32 ............................. CAGACCCAGCGTGCCGCCCAGCGCCCGCGAGC 60377 29 100.0 32 ............................. CAGATACCTTGTTTTGTAACTGCGTTAATGTC 60316 29 100.0 32 ............................. CCACCTTTAAGCGCCATACCATTTCACATATG 60255 29 96.6 32 ............................C TAATTTTATGACAAGCGGTGGTGATGCTGAAC 60194 29 100.0 32 ............................. TTGCTCATTGCGAATCCCTCATCTGGCCTTAT 60133 29 100.0 32 ............................. GACATCATTTTCACAGCGACGCAAACAGCCGT 60072 29 100.0 32 ............................. CCAGTGGATTGAGACCACATACCAAATCACCG 60011 29 100.0 32 ............................. GAAGATATTTCTGGCGTTGGCCTGCGCGTGAC 59950 29 100.0 32 ............................. GCGGATCAGATAGAAAAACTATTCCGACAGTT 59889 29 100.0 32 ............................. TAAACGCACCTGGCGCGCCACTTTATCAACAA 59828 29 100.0 32 ............................. ATCATCCTTGCTGCGACGGACTACAACCGCCG 59767 29 100.0 32 ............................. GTCCAACGACATGAGGCGGTGGAACGATACGT 59706 29 96.6 32 ............C................ TCAGCAACAATTATTTTCGTCGCATCGTCATA 59645 29 96.6 0 ..................A.......... | ========== ====== ====== ====== ============================= ================================ ================== 31 29 98.5 32 GTGTTCCCCGCGTCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTTTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GACGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCGCCCCTGCGGTAGAACACCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAACTCCTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGTGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 88424-87175 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGKKF010000031.1 Escherichia coli strain CJXMCRH520 H5_FDSW210082172-1r_1.clean_(paired)_contig_31, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 88423 29 100.0 32 ............................. AGATCACACTTACCCTGCAAAATCTTAATGGG 88362 29 100.0 32 ............................. ACAATCACATATACGACGCGAGACGGAGATCG 88301 29 100.0 32 ............................. CTACCGGGACCGTTGGTTTCCACCATGACCAG 88240 29 100.0 32 ............................. GCCAATGATCCCTACTCGTACCCCCAAACGGG 88179 29 100.0 32 ............................. CTGACGGAAAGCCAATTCAACGTAATCTCAGG 88118 29 100.0 32 ............................. AATGGCGTTTATTTCTCCCATGTAGTGAGCTG 88057 29 100.0 32 ............................. ATAACAACGACACTCCGGCATATATAAAGGCA 87996 29 100.0 32 ............................. GAGACGGAAATCGCGGTTGATAACGCTGATAT 87935 29 100.0 32 ............................. CCAAAATCCCCTAGGAATCCCAGCACGGTGCG 87874 29 96.6 32 ............................T GGATCTGTGGGATTATCAACGAGGTCAAATAA 87813 29 100.0 32 ............................. TCTTCAACGGTTTTGATTTCAAGTTTTTTGAG 87752 29 100.0 32 ............................. CGTGCCGCTCTTGAGATCGGCGGAAAGTTTAT 87691 29 100.0 32 ............................. CCAGTGGAGCCGCCGCGAATTTACACACGATT 87630 29 100.0 32 ............................. GCGAGGGGCAGCCGTTCGCGCTGCATGTTGAT 87569 29 96.6 32 ..A.......................... AAAAAACAGTGGTACTACCGCCCCGCCGAACA 87508 29 100.0 32 ............................. GCGATCTCGCGGAATACACCGACGAGGCGGGC 87447 29 100.0 32 ............................. TAAGGCCGTCGCCGGATCAGCCTGGCTATGCC 87386 29 93.1 32 .A.C......................... TTCTTGCGGGTGTTGCAAATATTCTTCACGTA 87325 29 93.1 32 .A.C......................... GAGCCTGACGAGACTACTGAGGCCGTTCTGTC 87264 29 96.6 32 .A........................... GACGCCGCCGCTGCGAAGCCGTTTCCGATGTT 87203 29 89.7 0 .A.C........................A | ========== ====== ====== ====== ============================= ================================ ================== 21 29 98.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTATGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTTGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //