Array 1 50-811 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_NYHA01000010.1 Listeria monocytogenes strain CFSAN049262 CFSAN049262_contig_0000010, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence                     	Spacer_Sequence               	Insertion/Deletion
==========	======	======	======	====================================	==============================	==================
        50	    36	 100.0	    30	....................................	AGATAAAAACAAGGACAAGTAAATTCAGAG	
       116	    36	 100.0	    30	....................................	AGCAAAAAGCATTACATTTGATGAAATTCC	
       182	    36	 100.0	    30	....................................	CTCCCGTCACCTTCTTCTAACTCCGCTATT	
       248	    36	 100.0	    30	....................................	AGTATTGCCATTAATAGCATCAAGTAAAGA	
       314	    36	 100.0	    30	....................................	AGCTTATAATTTCCATCAACAAAATATTAG	
       380	    36	 100.0	    30	....................................	CTTAGTTTATCAGTTTATCACAATGGAAGA	
       446	    36	 100.0	    30	....................................	TAGATATACTTGTCCTTTTCCTGTTACTTG	
       512	    36	 100.0	    30	....................................	CATTCTTCCGCAGAGAGTTCAACGTAACTT	
       578	    36	 100.0	    30	....................................	GCAACAATGCAATGAAACATTAAGAAATGG	
       644	    36	 100.0	    30	....................................	TTATTCGCTAATGTTGCAAGATGTGCAGCA	
       710	    36	 100.0	    30	....................................	TTTATTGTCAAAACACTTCCCGAATGCGTT	
       776	    36	 100.0	     0	....................................	|                             	
==========	======	======	======	====================================	==============================	==================
        12	    36	 100.0	    30	GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC	                              	       

# Left flank :   TTTTGAATGCTACCAAAACAATTGTAGAGGATACGGCATTTAATCCACTG
# Right flank :  TTTTGTTCGCGTCGTTCTGTCAGCCCG

# Questionable array : NO	 Score: 6.26
# 	Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:69.44%AT]
# 	Reference repeat match prediction:         F [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  F [-1.30,-0.80] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      NA [0-0] Score: 0/0.41
# 	AT richness analysis in flanks prediction: F [53.3-20.0]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [5.14,0   Confidence: HIGH] 

# Array family : II-A/C [Matched known repeat from this family],   
//