Array 1 2274-3096 **** Predicted by CRISPRDetect 2.4 *** >NZ_OEUV01000028.1 Salmonella enterica isolate STY148, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2274 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 2335 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 2396 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 2457 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 2518 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 2579 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 2640 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 2701 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 2762 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 2823 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 2884 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 2945 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 3006 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 3067 29 96.6 0 A............................ | A [3093] ========== ====== ====== ====== ============================= ================================ ================== 14 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 66733-68042 **** Predicted by CRISPRDetect 2.4 *** >NZ_OEUV01000026.1 Salmonella enterica isolate STY148, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 66733 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 66794 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 66855 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 66916 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 66977 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 67038 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 67099 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 67160 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 67221 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 67282 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 67343 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 67404 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 67465 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 67527 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 67588 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 67649 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 67710 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 67771 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 67832 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 67893 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 67954 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 68015 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 22 29 98.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //