Array 1 342088-342579 **** Predicted by CRISPRDetect 2.4 *** >NZ_SXER01000001.1 Clostridium sporogenes strain IFR 18/079 contig00001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 342088 30 100.0 35 .............................. AAGATTGAATGATTCCAGGGGAGGCAACTCTTAAA 342153 30 100.0 37 .............................. TCAGCTGAAGAATTAGAGGAAGGATCAAAGGACAATC 342220 30 100.0 36 .............................. TAATTTCCTCCTTGTTTTTTATTTAGTTTTTAAGTA 342286 30 100.0 37 .............................. AGCATGTAGTCCATCTCTTTGCCTTTTTCAGTATATA 342353 30 100.0 35 .............................. TTCAAACTTAGATCTTTAAAATAAGGTTTTATTTT 342418 30 100.0 36 .............................. GAAAGAGAAGCTGTACAAAAAAAAGAAGGTGGCAAA 342484 30 100.0 36 .............................. TTGTTTGAGGTACTAAGCGTATTTTTGAGTTTTCTG 342550 30 93.3 0 ............................GC | ========== ====== ====== ====== ============================== ===================================== ================== 8 30 99.2 36 GTTGAACAGTAACATAAGATGTATTTAAAT # Left flank : CAAAATATTATGTATGCTATTTGGAGTGCATATGAAGTAGCTAAAAATATTTAAATAAACCTTTGCAAAAAACTAGAATGGGTTAATATCCATATCTAGTTTTTTGGTTCTTTACTGATGGGAAATTTTCTACGAAACCTTGTAAAATCAATGGGCGTATGATATTCTTAGAAATAAAGAATGGCTATTTTGCTATGGTTGAATAATAACATGAGATGTATTTAAGCAGGGAACCCAAATCTCTGATTTGGCATGAGTCGCTTACCCCTTCGAGAATGGGAGAAGAAGTTTCATTAATGAGTATAGCGTATATATAATTAAATTTTTCCAAGTGAATTAAAAATAGAAACCTATTCTGGCTATTGAAACATAAGGCCTAGGATAGGTTTTTGTTATGTATTTTTGAAAAATCAAAATCACCTGGAAAAGTTTTTATGAAACCTTGTAAAATCAATAGGTATATGATATTCTTAAAAATAAAGAATGGCTATTTTACTATG # Right flank : CAGGGAACCCAAATCTCTGATTTGGCGTGAGTCGCTTACTCCTTCGAGAATGGGAGAAGGAGTTTCATTAATGAGTATAGCGTATATATAATTAAATTTTTCCAAGTGAATTAAAAATAGAAACCTATTCTGGCTATTGAAACATAAGGCCTAGAATAGGTTTTTGTTATGTATTTTTAAAAAACAAAATTACTTGGAAAAATTTTTATGAAACCTTGTAGAATCAATGGCTATATGATATTCTTATAAATAAGGAATGGCTATTTTGCTATGGTAGAACAATAACATGAGATGTATTTAAATAATTTTTTATTAAATTATTTTATATTAGCTTTAAGTAGAACAATAACATGAGATGTATTTAAATTAGTTAATTGTATCTATTGTTTGAAATTGACTATAGGTAGAACAATAACATGAGATGTATTTAAATTTTACCTTTAATTCTTGTTTCTTAGGTCTTTTAACTGTAGAACAATAACATGAGATGTATTTAAATA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACAGTAACATAAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0 Confidence: HIGH] # Array family : NA // Array 2 342852-343267 **** Predicted by CRISPRDetect 2.4 *** >NZ_SXER01000001.1 Clostridium sporogenes strain IFR 18/079 contig00001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 342852 30 100.0 34 .............................. AATTTTTTATTAAATTATTTTATATTAGCTTTAA 342916 30 100.0 36 .............................. TAGTTAATTGTATCTATTGTTTGAAATTGACTATAG 342982 30 100.0 36 .............................. TTTACCTTTAATTCTTGTTTCTTAGGTCTTTTAACT 343048 30 100.0 36 .............................. AAAGTTGGATAAGATTTTACTGTTTCTGATAGTTCA 343114 30 96.7 28 ..T........................... CTGGCAGGATCATTTACTATTATTTTTA Deletion [343172] 343172 30 86.7 36 ..TA....T......A.............. TAGTCCTTCTGACTCATCTGAGTTATATTCGCGAAT 343238 30 76.7 0 ..T.....G......A.......A...TGC | ========== ====== ====== ====== ============================== ==================================== ================== 7 30 94.3 34 GTAGAACAATAACATGAGATGTATTTAAAT # Left flank : AGTTGAACAGTAACATAAGATGTATTTAAATTTCAAACTTAGATCTTTAAAATAAGGTTTTATTTTGTTGAACAGTAACATAAGATGTATTTAAATGAAAGAGAAGCTGTACAAAAAAAAGAAGGTGGCAAAGTTGAACAGTAACATAAGATGTATTTAAATTTGTTTGAGGTACTAAGCGTATTTTTGAGTTTTCTGGTTGAACAGTAACATAAGATGTATTTAAGCAGGGAACCCAAATCTCTGATTTGGCGTGAGTCGCTTACTCCTTCGAGAATGGGAGAAGGAGTTTCATTAATGAGTATAGCGTATATATAATTAAATTTTTCCAAGTGAATTAAAAATAGAAACCTATTCTGGCTATTGAAACATAAGGCCTAGAATAGGTTTTTGTTATGTATTTTTAAAAAACAAAATTACTTGGAAAAATTTTTATGAAACCTTGTAGAATCAATGGCTATATGATATTCTTATAAATAAGGAATGGCTATTTTGCTATG # Right flank : CAAAGAAATATTAACGGCGAATATAAAGATATATTAGTATGAACATTAACGGAATAAAAACTAATTTTAAAGCATAGTTTATTTATGTAAATACATACTGAAACTATGCTTTAGGAATATTCATAAATATAAGTAAAAGTTTATGTTTGTATATTATGTTTATATGTTTAAATAGCTCATCCTATGGTAATATAATAGAGTGAGGAGAGTGAAAGTTATATGAAAAAGAGATTTAATGTAACTGGAACCTGTATACCAGAAAAGCATTATATGGTGGACATATCTAATAAGATAGATAGCATACTAAAATTAGTAAATAATGAAGAATATTTTATTATAAATAGACCAAGGCAGTATGGTAAAACAACTACTTTGTATATGTTAGAAAAAAGATTAAATAGTATGGAAGAATACTTACCTATAAAAATAAGTTTTGAAGCTATAGATACAGAGGGATATAGTGAAGTAAGAAAATTTTTAAGCAGCATAATTATGCAAAT # Questionable array : NO Score: 5.97 # Score Detail : 1:0, 2:3, 3:0, 4:0.71, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGAACAATAACATGAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 3 345298-345663 **** Predicted by CRISPRDetect 2.4 *** >NZ_SXER01000001.1 Clostridium sporogenes strain IFR 18/079 contig00001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================== ================== 345298 29 100.0 37 ............................. TTAGATAAAGATGGTATATATAGGGTTATTAAATTAA 345364 29 100.0 38 ............................. CTTATGATACAGCAATTAAATCTCTAAAAGTCAAAACA 345431 29 100.0 38 ............................. TCCCTAATGATGTTGCTATTCAGTCTTTAGAGATGCCG 345498 29 89.7 42 ......AA......G.............. CTAAATCAAATATAAATAGCTTCTTTGACATTTTTATTAGTG 345569 29 89.7 37 ......AA......G.............. ATTTCTGTCATTTCGCTTTTACCGCCAGAAGTTATAG 345635 29 82.8 0 ......AA......G............GC | ========== ====== ====== ====== ============================= ========================================== ================== 6 29 93.7 39 TTGAACCTTAACATAAGATGTATTTAAAT # Left flank : TTAAAGAAGTAAGAGGCGGAGAAGAAAAAAGATTTGATATAGTTATAACCTATAATAAAAAGATGTATATTCTAGAACTTAAAATATGGAGAGGGGAAGAATATCATAAAAAAGGTTTAATACAACTAGCTGAATATTTAAATCAATACGGATTAGATAAAGGATACCTTCTAATATTTGATTTAAGAAAATCCACAAATCTAATAGGTGAAGTAGAAGAAAATTATATAGGCATAGAGAATAATAATAAAAAAATAATACAAGTTTATTGTTAGAATAATATATAAAAAATGAGTAAAGATAAGAACAGGACTCTAAAACTTTTTCCAACCAATTCTAATTCAAAAACCTATTTTAAGCATTGAAGTATAAGGCTTAGAATAGGTTTTTGTTATGTATTTTTAAAAAATCAAAATCACCTGGAAAAATTTCTATAAAACCTTGTAAAATCAATGGGTATATGTTATTCTTGAAATTGAGGAATGGCTATTTTGCTATGA # Right flank : CAGGGAACACAAATCTTTGATTTGGTGTGAGTGTCTTACTCCTTGGAGAAGAGGAGAAGGCGTTTTATAAATTAAATTTTCCCCGACGTAACAAATTTTAAAACTTATTCTAGCCATTGAAGTATAAGGCTTAGAATGAGTTTTTATCATGCATTTATGAAAAATCAAAATTACCTGGGAAAATTTCTACCAAACCTTGTAAAATCAATGGGTATATGATATTCTTGAAATTAAGGAATGGCTATTTTGCTATGGTTGAACCTTAACATAAGATGTATTTAAATTACTGTATCATTAGTGAAGGATAAAAACTTCCAACGTGTTGAACCTTAACATAAGATGTATTTAAATGGGCATAATTCATAAGTGATTAAATCATTTATGATGTTGAACCTTAACATAAGATGTATTTAAATCAAAATTTGATTAGATAAGTACCTGCAAATTTTAGTTGAAGAATAACATAAGATGTACTTAATCAAGAAATGCAATCATCTAAT # Questionable array : NO Score: 5.95 # Score Detail : 1:0, 2:3, 3:0, 4:0.69, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTGAACCTTAACATAAGATGTATTTAAAT # Alternate repeat : TTGAACAATAACATGAGATGTATTTAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0 Confidence: HIGH] # Array family : NA // Array 4 346143-345917 **** Predicted by CRISPRDetect 2.4 *** >NZ_SXER01000001.1 Clostridium sporogenes strain IFR 18/079 contig00001, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 346142 30 80.0 34 GA....G..............TTC...... TAAAATTTGCAGGTACTTATCTAATCAAATTTTG 346078 30 100.0 35 .............................. ATCATAAATGATTTAATCACTTATGAATTATGCCC 346013 30 100.0 37 .............................. ACGTTGGAAGTTTTTATCCTTCACTAATGATACAGTA 345946 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 4 30 95.0 36 ATTTAAATACATCTTATGTTAAGGTTCAAC # Left flank : GCTTACAAACTAGCAAAGAACCATACGAAATAATCCTTAACTATAAAGCAAATGAAAATTTAGGTGAAGAAAATTATAATAAATTTTGGAGTGATAAAAAGCCTGCCAAGCTTTTAGAAAAGAATGCAGTGGTATTATTATCTCTTGTAACAAATGCTGAAATTATTAAATTTAATGTAGACAATATAGGAAAAGAATCCTATGAATATAATAGAAAAAGTTTAGAACAAAAATACGGCAGCTTAGAAAAACTATTTAACGATAATGATTCATTAAATAAGTTTTTAAACAATTAGTATCTAACAATTTATATAGCCCCCATTAAAAGAAAACATTTAACTTCTTTTAATAGGGGCTAAAATTTCAATAATTCTCTAAATTACAATCTAAAATTAAAGCTAATTTTCAAAAATATTTTAGTCAATAAAAGTCCTACAATTTAATTCAAAAATTATTGCTATGTATAAATGATTATTCCAAATTAGATGATTGCATTTCTT # Right flank : CATAGCAAAATAGCCATTCCTTAATTTCAAGAATATCATATACCCATTGATTTTACAAGGTTTGGTAGAAATTTTCCCAGGTAATTTTGATTTTTCATAAATGCATGATAAAAACTCATTCTAAGCCTTATACTTCAATGGCTAGAATAAGTTTTAAAATTTGTTACGTCGGGGAAAATTTAATTTATAAAACGCCTTCTCCTCTTCTCCAAGGAGTAAGACACTCACACCAAATCAAAGATTTGTGTTCCCTGCTTAAATACATCTCATGTTATTGTTCAACTATAACTTCTGGCGGTAAAAGCGAAATGACAGAAATATTTAAATACATCTCATGTTATTGTTCAACACTAATAAAAATGTCAAAGAAGCTATTTATATTTGATTTAGATTTAAATACATCTCATGTTATTGTTCAACGGCATCTCTAAAGACTGAATAGCAACATCATTAGGGAATTTAAATACATCTTATGTTAAGGTTCAATGTTTTGACTTTTA # Questionable array : NO Score: 5.61 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTAAATACATCTTATGTTAAGGTTCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [70.0-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,0.64 Confidence: LOW] # Array family : NA // Array 5 350197-351018 **** Predicted by CRISPRDetect 2.4 *** >NZ_SXER01000001.1 Clostridium sporogenes strain IFR 18/079 contig00001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 350197 30 100.0 35 .............................. TCTTTATTGTCTACTCTAGGTACTTCATCCACTAT 350262 30 100.0 36 .............................. CCTCTTACTTATTCTTTACTAACAGTATATGTACTG 350328 30 100.0 36 .............................. CAGATAATATTGGTGCTGCTTTCCAAACACCTGGAG 350394 30 100.0 35 .............................. CTAGAATGGATAAATAAAAGCGGTTATCTAAGTCA 350459 30 100.0 35 .............................. CCAGTTTGCTTAACTACATTACCCTCAGCATCTAT 350524 30 100.0 36 .............................. TTATCTTTCTTAGGGTATTGTTGCAAAATAATAGAT 350590 30 100.0 35 .............................. CAAAATAATCTCCAACTCTTTTAATAAGTTCAATT 350655 30 100.0 36 .............................. ATTATTATTTCTTTATCATTTGTAAAAACACTTATA 350721 30 100.0 36 .............................. TATATTATCATTTCAGAACCAATACGCACCGCTATA 350787 30 100.0 37 .............................. GTAAAAGATATTAGACAAGACAAGCCTACAAATATAG 350854 30 100.0 38 .............................. TTTAATTTATCAGCTGCTGAAATTTTTTCTTTAGGCAT 350922 30 90.0 35 G.....T........A.............. AGCACATTTTATTTATTGGGCAAAAAGTGTAACAG 350987 30 80.0 0 G.......A...........AA...C.T.. | C,A [351006,351011] ========== ====== ====== ====== ============================== ====================================== ================== 13 30 97.7 36 ATTGAACATTAACATGAGATGTATTTAAAT # Left flank : GCAGCATTTGCACAGTCAACAGGCAAAGGTAATTCAAATAATCAATCTAATGAAAGCCCAAATGCAGATGATAATCAAAATTATACAGTGTATAAAACCAGAACTGGATCTAAATATCATAGTTCAGGATGTAGATATTTAAAGAAAAGTTGTTATGAAACAACAGTATCACAAGCACGAAATGAAGGTTTAACTCCATGTAGTGTGTGCAATCCATAGCATATAATAACATGTTAAGCATAAGTAATAATTGTACTTTCTAATATATTGATAAATGTATTTTATTAATATACTTAATAAATATAATATATATCTAATTAAATTTTTCCAAGTAAATTAAAAATAAAAACCTATTCTAGCTATTGAAATATAAGGTCTAGAATAGGTTTTTATTATGTATTTATAAAAAATTAAAATCACCTGGAAAAATTTCTATGAAACCTTGTAAAATCAATGGTTATATGATATTCTTAAAAATAAGGAATGGCTATTTTGCTATG # Right flank : TACAGACGAATTTAAAAATACAATAGTAGAGTTTTATAACTCTGGAAAAAATCTATCAGAATTAAGTAATGAATATGGCATAAATGACTGGATGAATAAAGAAAAATGAGTCTGTTTCTGTATATAAAGATACCATCATAACAACAGATGAAAAACATACTGCCAGATAACGATTTTTTTATTCGCTGTCTGGCAGTATGTTTTTCTACATGAAACGCATAATAGCCTATGAAAGCATTTGCCAATGGTATTGAGCTTTCTAAGAAAGCAGGGGATAACTAAGTTCTCTATTTTTTAGAAGTTTCCCTGTATGACTACTTGAACATTTCATTATATTTAACACTGTTCCTTGTATCATCAGTTTGCCACCATGATCTCCACCCTCTGGACCTAAATCTATAATCCAATCAGCATTTTTGATTACATCAAGATTATGTTCCACTAAGATTACAGTAGTGATTTTCCCTAGTATATTCAACAAATTTTGAATATCACTAAAA # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGAACATTAACATGAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.50,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 6 363468-363693 **** Predicted by CRISPRDetect 2.4 *** >NZ_SXER01000001.1 Clostridium sporogenes strain IFR 18/079 contig00001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ======================================= ================== 363468 28 100.0 37 ............................ ATAATAGAGCTTTTTCTCTTAATGATATGCAGTTTTC 363533 28 100.0 38 ............................ ATTACCTAATGTAGTGGCCATTTGAGCAAATCCTTCTT 363599 28 96.4 39 ........A................... ATGATATTCAAAGTGGGAGAATCAAACCTGTTGGCGGTA 363666 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ======================================= ================== 4 28 99.1 38 GTTGAACAGTAACATAAGATGTATTTAA # Left flank : CATAAGGTTTAGGATAGGCTTTCGTTGTGTATTTTTGAAAAATCAAAATCACCTGGAAAAATTTCTATAAAATCTTGTAAAATCAATAGGTATATGATATTCTTAAAAATAAGGAATGGCTATTTTACTATGGTTGAACAGTAACATAAGATGTATTTAAATTGTTTTATTTCTAGCTGCTTATAAGATTGGATTATGTTGAACAATAACATGAGATGTATTTAAGCAGGGAACGCAAATCTCTGATTTGGCGTGAGTTGCTTACTCCTTCGAGAATGGGAGAAGGAGTTTCATTAATGAGTATAGCGTATATCCAATTAAATTTTTCCAAGTGAATTAAAAATAGAAACCTATTCTGGCTATTGAAATACAAGGCCTAGGATGGGTTTTCGTTAAGTGTTTTTGAAAAATCAAAATCACTTGGAAAACTTTCTGCTAAACCTTGTAAAATCAATAGGTATATGATATTCTTGAAAATAAGGAATGGCTATTTTACCATG # Right flank : AGCAGGGAACCTAAATCTCTGATTTGGCGTGGGTCGCTTACTCCTTCGAGAATGGGAGAAGGAGTTTCATTAATGAGTATAGCGTATATCTAATTGAATTTTTCCAAGTGAATTTTAAATAGAAACTTATTCTAGCTATTGAAACATAAGGCCTAGAATGGGTTTTTGTTATGTATTTTTGAAAAATTAAAATCACCTGGAAAAATTTTTATAGAACCTTGTAAAATCAATGGGTATATGATATTCTTAAAAATAAGAAATGGCTATTTTGCTATGGTTGAACAATAACATGAGATGTATTTAAATGCATCTGTGTATCTTCCAAGTTGTTTTAAGCTTTCGTTGAACAATAACATGAGATGTATTTAAATTCAAATAAACTTTCTCCAAACATTTTCTTTAGCGATGTTGAACAATAACATGAGATGTATTTAAATTCTCCTATTGCAAGCAATTCCCCTAAATCTTCCATTGTTGAACAATAACATGAGATGTATTTA # Questionable array : NO Score: 5.81 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACAGTAACATAAGATGTATTTAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0 Confidence: HIGH] # Array family : NA // Array 7 363969-364325 **** Predicted by CRISPRDetect 2.4 *** >NZ_SXER01000001.1 Clostridium sporogenes strain IFR 18/079 contig00001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 363969 30 100.0 35 .............................. GCATCTGTGTATCTTCCAAGTTGTTTTAAGCTTTC 364034 30 100.0 36 .............................. TCAAATAAACTTTCTCCAAACATTTTCTTTAGCGAT 364100 30 100.0 36 .............................. TCTCCTATTGCAAGCAATTCCCCTAAATCTTCCATT 364166 30 100.0 36 .............................. TATACCTAGTCGTGGAGAAATAGATATGGATAAATT 364232 30 86.7 34 .......CT......AG............. AACAAAAATAGTAAGGCTTTTTTATTGTCAATGG 364296 30 80.0 0 .......CT......AG...........GC | ========== ====== ====== ====== ============================== ==================================== ================== 6 30 94.5 36 GTTGAACAATAACATGAGATGTATTTAAAT # Left flank : TTGAACAGTAACATAAGATGTATTTAAATAATAGAGCTTTTTCTCTTAATGATATGCAGTTTTCGTTGAACAGTAACATAAGATGTATTTAAATTACCTAATGTAGTGGCCATTTGAGCAAATCCTTCTTGTTGAACAATAACATAAGATGTATTTAAATGATATTCAAAGTGGGAGAATCAAACCTGTTGGCGGTAGTTGAACAGTAACATAAGATGTATTTAAGCAGGGAACCTAAATCTCTGATTTGGCGTGGGTCGCTTACTCCTTCGAGAATGGGAGAAGGAGTTTCATTAATGAGTATAGCGTATATCTAATTGAATTTTTCCAAGTGAATTTTAAATAGAAACTTATTCTAGCTATTGAAACATAAGGCCTAGAATGGGTTTTTGTTATGTATTTTTGAAAAATTAAAATCACCTGGAAAAATTTTTATAGAACCTTGTAAAATCAATGGGTATATGATATTCTTAAAAATAAGAAATGGCTATTTTGCTATG # Right flank : CAGGGAACCTAAATCTCTGATTTTGCGTGAGTCGCTTACTCCTTCGAGAATGGGAGAAGGAGTTTCATTAATGAGTATAGCATATATCTAATTAAATTTTTCCAAGTGAATTTTAAATTGAAATCTATTCTAGCTATTGAAACATAAGGCCTAGGATAGGTTTTTGTTATGTATTTTTAAAAAATTAAAATCACCTGGAAAACTTTCTGCAAAACCTTGTAAAATCAATGGGTGTATGATATTCTTAAAAATAAGGAATGGTTATTTTACTATGGTTGAACAATAACATGAGATGTATTTAAATAAAATTAAGTAGCAGAATGGAAAGATTTTTAGGAGCGTTGAACAATAACATGAGATGTATTTAAATACTTTTACAACCTGAAAAAGGATGGAAAAGATATGAGTTGAACAATAACATGAGATGTATTTAAATTTATTACTAGCTCCTTTTATTAAAACAAGAGTACCAGTTGAACAATAACATAAGATGTATTTAA # Questionable array : NO Score: 5.98 # Score Detail : 1:0, 2:3, 3:0, 4:0.72, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACAATAACATGAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0 Confidence: HIGH] # Array family : NA // Array 8 364599-364890 **** Predicted by CRISPRDetect 2.4 *** >NZ_SXER01000001.1 Clostridium sporogenes strain IFR 18/079 contig00001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 364599 29 100.0 37 ............................. TAAAATTAAGTAGCAGAATGGAAAGATTTTTAGGAGC 364665 29 100.0 37 ............................. TACTTTTACAACCTGAAAAAGGATGGAAAAGATATGA 364731 29 100.0 37 ............................. TTTATTACTAGCTCCTTTTATTAAAACAAGAGTACCA 364797 29 96.6 36 ...............A............. CATGTAAAGATTTCATGTCCTTTTTATTTAAAAAAG 364862 29 93.1 0 ........G......A............. | ========== ====== ====== ====== ============================= ===================================== ================== 5 29 97.9 37 GTTGAACAATAACATGAGATGTATTTAAA # Left flank : TGTTGAACAATAACATGAGATGTATTTAAATTCTCCTATTGCAAGCAATTCCCCTAAATCTTCCATTGTTGAACAATAACATGAGATGTATTTAAATTATACCTAGTCGTGGAGAAATAGATATGGATAAATTGTTGAACCTTAACATAGGATGTATTTAAATAACAAAAATAGTAAGGCTTTTTTATTGTCAATGGGTTGAACCTTAACATAGGATGTATTTAAGCAGGGAACCTAAATCTCTGATTTTGCGTGAGTCGCTTACTCCTTCGAGAATGGGAGAAGGAGTTTCATTAATGAGTATAGCATATATCTAATTAAATTTTTCCAAGTGAATTTTAAATTGAAATCTATTCTAGCTATTGAAACATAAGGCCTAGGATAGGTTTTTGTTATGTATTTTTAAAAAATTAAAATCACCTGGAAAACTTTCTGCAAAACCTTGTAAAATCAATGGGTGTATGATATTCTTAAAAATAAGGAATGGTTATTTTACTATG # Right flank : ATTTGAATGAGTATGAAAAATTAAATGTAATTTAACCATAACATATGATGTGAAATCACTATAAAGATTATAATCTTTATAGTGATTTTTTAATATTTAGAAAAATAATATGCAACATTATGATTATATGGAAAATGTTGATTTAATATATAAAATGTGGTAATATGGAATAAAGATTAAGAAAGTTGTTAATATTCAATAAAATATAAGCGCAGACTGGAGGTGAAATAATGAGAGTATATGAATTAACACTAAAGATATTTCTTCTTAAGGATTTAACTATGGACAAGTCTTATGAAAAATTAACAGAATTGATTGATAAATCTCTATGCAAAGATGATGAATTATTAGAGTTACATAATCAAAATAAGTATAAATACTATACTTTTTCATTACCTTATAAATTAGAAAAAGACAAAATATATAAAGCTGGGAATATATATTCAGTAAAAATAAGAACTATAGATGAGAAAATATTAAAGAATTTCAAAACTCAGTTA # Questionable array : NO Score: 5.96 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACAATAACATGAGATGTATTTAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 9 374107-374330 **** Predicted by CRISPRDetect 2.4 *** >NZ_SXER01000001.1 Clostridium sporogenes strain IFR 18/079 contig00001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =========================== ======================================== ================== 374107 27 100.0 39 ........................... ATTGTAAACACAAAAATGCAAAAAGAAGAAGTCTCCAAA 374173 27 100.0 37 ........................... ATTATTTATACCATCCGTTAGATAAACTTACATTATG 374237 27 100.0 40 ........................... ATAAAATGATACAGCAGGAATTTAAAAGATTTGAAACTAG 374304 27 92.6 0 .......A......G............ | ========== ====== ====== ====== =========================== ======================================== ================== 4 27 98.2 39 TTGAACATTAACATAAGATGTATTTAA # Left flank : TATAAGGCCTAGAATGGGTTTTCGTTAAGTGTTTTTGAAAAATCAAAACCACTTGGAAAACTTTCTGCTAAATCTTATAAAATCAATTGTTATATGATATTCTTAAAAATAATTAATGACTATTTTACTAAGGTTGAATAGTAACATAAGATGTATTTAAATAATTTTTTTATACCAACAACTCCTTGAGTTTTTGGTTGAACAATAACATAAGATGTATTTAAGCAGGGAACCCAAATCTCTGATTTGGCGTGAGTCACTTACTCCTTCGAGAATGGGAGAAGGAGTTTCATTAATGATTATAGCGTATATCTAATTGAATTTTTCCAAGTGAATTTTAAATTAAAATCTATTCTAGCTATTGAAATATAAGGCCTAGGATGGGTTTCCGTTATGTGCTTTTAAAAAATTAAAATCACCTGGAAAATTTTCTGCAAAACCTTGTAAAATCAATAGGTATATGATATTCTTGAAAATAAGGAATGGCTATTTTACTGTGG # Right flank : AGCAGGGAACCCAAATCTCTGATTTAGCGTGAGTCGCTTACTCCTTGGATAATGGGAGAATGAGTTTCATTAATGGGTATAGCGTATATATTATATCTAATTAAATTTTTCCAAGTGAATTTTAAATAAAAATCTATTCTAGCTATTGATATGTAAAGTTTAGGAGCGGTTTTTGCTATGTATTTTTGAAAAATTAAAATCACCTGGAAAATTTTCTGCAAAACCTTGTAAAATCAATGGGTATATGATATTCTTGAAACTAAGGAATCGCTATTTTACTATGGTTGAACAATAACATAAGATGTATTTAAATTACAATACTGTTCGTACCCCTGTTAATTTTTCATTGCGCTGAACATTAACATAAGATGTATTTAAGCAGGGAACCCAAATCTCTGATTTGGCGTGAGTCGCTTATTCCTTCGAGAATAGGAGAAGGAGTTTCATTAATGAGTATAGCGTATATCTAATTAAATTTTTCCAAGTGAATTTAAAATAGA # Questionable array : NO Score: 5.77 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTGAACATTAACATAAGATGTATTTAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:81.48%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0 Confidence: HIGH] # Array family : NA // Array 10 375353-376043 **** Predicted by CRISPRDetect 2.4 *** >NZ_SXER01000001.1 Clostridium sporogenes strain IFR 18/079 contig00001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 375353 30 100.0 36 .............................. TAATCATCAAGTCTTTCTATTTCTTCATTTAGTTTA 375419 30 100.0 37 .............................. CCAAGCAACAATCATCAGATTTACAAAAAATATATAA 375486 30 100.0 36 .............................. GCATATCGTCTTTAGGAAATCTATTTCCATTTAACC 375552 30 90.0 37 ......C.T......A.............. TTTAAATTTAAATCTTTAAAATAAGGTCTTATTTTTA 375619 30 90.0 36 ......C.T......A.............. TTTTTCTGCCTGCTCCTAAAGTACCATCTATTTGTT 375685 30 86.7 36 ......C.T......A....A......... TTTCAATAGCATTTCCCCATCCTACTGTCCATGGTT 375751 30 100.0 36 .............................. AATATTAGAATTGTTTGGAGGAATCGGAGCATCTAG 375817 30 90.0 36 ......C.T......A.............. TATTCTTAGATAATTTTTCAAATGCAGCATCTATAC 375883 30 96.7 36 ...............A.............. CCTCTATTTATTTAATATTTAAAATATGATATTATT 375949 30 96.7 35 ...............A.............. GCAGGTATAGAAGAATTGGTAATTGCTACGGATAA 376014 30 86.7 0 ......C.A...................GC | ========== ====== ====== ====== ============================== ===================================== ================== 11 30 94.3 36 GTTGAATAGTAACATGAGATGTATTTAAAT # Left flank : TAAGGTTTAGGATAGGTTCTTGTTATGTATTTTTGAAAAATTAAAATCATCTGGAAAAAAATTTATGAAACCTTGGAAAATCAATGGGTGTATGATATTCTTAAAAATAAGGAATGGCTATTTTACTATGGTTGAACAATAACATAAGATGTATTTAAATTTTATTTTATATCCTGATGCGCACATGTTTATAAATCGTTGAACATTAACATAAGATGTATTTAAGCAGGGAACCCAAATCTCTGATTTGGCGTGAGTCGCTTACTCCTTCGAGAATGGGAGAAGGAGTTTCATTAATGAGTATAGGGTATATCTAATTAAATTTTTCCAAGTGAATTTAAAATAGAAACATGTTCTAGCCATTGAAACATAGGGTCTAGGATAGGTTTTTGTTATGTATTTTTGAAAAATCAAAATCACCTGGAAAAGTTTTTATGAAACCTTGTAAAATCAATGGGTGTATGATATTCTTAAAAATAAAGAATGGCTATTTTACTATG # Right flank : CAGGTAACCCAAATCTCTGATTTGGCGTGAGTCGCTTACTCCTTCGAGAATGGGAGAAGGAGTTTCATTAATGAGTATAGCGTATATCTAATTGAATTTTTCCAAGTGAATTTTAAATTGAAATCTATTCTAGCTATTGAAATATAAGGCCTAGGATAGGTTTTTGTTTTGTATTTTTGAAAAATTAAAATCACCTGGAAAGTTTTCTACAAAACCTTGTAAAATCAATAGGTATGTGATATTCTTGAAAATAAGGAATGGCTATTTTACTATGGTTGAATAGTAACATGAGATGTATTTAAATAATGTTAAAACAGTTACACCAGCTACAAGACCACGACCGTTGAATAGTAACATGAGATGTATTTAAATATTATAAAGCTAGAAGAAAGAGTTAAAACTTATAGGTTGAATAGTAACATGAGATGTATTTAAATGTAAAAAGGATAAAGACTACGATCCTTTTATACTAGGTTGAACAGTAACATAAGATGTATTTA # Questionable array : NO Score: 5.58 # Score Detail : 1:0, 2:3, 3:0, 4:0.71, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.61, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAATAGTAACATGAGATGTATTTAAAT # Alternate repeat : GTTGAACATTAACATAAGATGTATTTAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0 Confidence: HIGH] # Array family : NA // Array 11 376317-376611 **** Predicted by CRISPRDetect 2.4 *** >NZ_SXER01000001.1 Clostridium sporogenes strain IFR 18/079 contig00001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 376317 30 100.0 38 .............................. AATGTTAAAACAGTTACACCAGCTACAAGACCACGACC 376385 30 100.0 35 .............................. ATTATAAAGCTAGAAGAAAGAGTTAAAACTTATAG 376450 30 100.0 36 .............................. GTAAAAAGGATAAAGACTACGATCCTTTTATACTAG 376516 30 93.3 36 ......C........A.............. AATAATGAAGGATTTGCTACAGTTGCAAGTGATTTA 376582 30 83.3 0 ......C.T..............C.G...A | ========== ====== ====== ====== ============================== ====================================== ================== 5 30 95.3 36 GTTGAATAGTAACATGAGATGTATTTAAAT # Left flank : GTTGAACATTAACATAAGATGTATTTAAATTATTCTTAGATAATTTTTCAAATGCAGCATCTATACGTTGAATAGTAACATAAGATGTATTTAAATCCTCTATTTATTTAATATTTAAAATATGATATTATTGTTGAATAGTAACATAAGATGTATTTAAATGCAGGTATAGAAGAATTGGTAATTGCTACGGATAAGTTGAACAATAACATGAGATGTATTTAAGCAGGTAACCCAAATCTCTGATTTGGCGTGAGTCGCTTACTCCTTCGAGAATGGGAGAAGGAGTTTCATTAATGAGTATAGCGTATATCTAATTGAATTTTTCCAAGTGAATTTTAAATTGAAATCTATTCTAGCTATTGAAATATAAGGCCTAGGATAGGTTTTTGTTTTGTATTTTTGAAAAATTAAAATCACCTGGAAAGTTTTCTACAAAACCTTGTAAAATCAATAGGTATGTGATATTCTTGAAAATAAGGAATGGCTATTTTACTATG # Right flank : AAAACAAATAACGATGAAAAGATAACAAATAATAATTAAGGTGGTTTTTCATTGACAAGGTTTTTCAATATTTTGAAATTGAAAAACTAACAGCAAATATTATACAGAAAACTATAGAAAATCAATTATAAGCAGTAAAATCTAATTTTATAGTTAGTTTTTTATAGAATTTTATAGTTAAAAAATTAAACATATAAATATGTGTTTATTTTTTATGTAAATTTGATATAATATAAATAAGAAAAGCTTAGTGTTGGAGCACTAAGCAATCCTTAGAACATTTATTTTGTTTTAGGGCTATTGGATGAATTTAATAATTAAATTTGAGAGATTAAAGCACTATTCTTGGTCGGATGGGTGCTTTTTCTCTTTGCCATTAAGTTCTATGTGAATACCAAGAAATTTAATCTTGATAACTAGTTTAGAAATAAAAAGATTATGTTTTAAAATTAATTTAACAATATAAATTACAACAAAACTTTTTATGGTTAATTCTAGCA # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAATAGTAACATGAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 12 377522-377684 **** Predicted by CRISPRDetect 2.4 *** >NZ_SXER01000001.1 Clostridium sporogenes strain IFR 18/079 contig00001, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 377522 30 100.0 37 .............................. CAATTAAATTTACACATTAAATTTTCTTCTTTATCTA 377589 30 100.0 36 .............................. GTATGATGGAGCTATTGATGTAGATACTAAATACAC 377655 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 3 30 100.0 37 GTTGAACAGTAACATAAGATGTATTTAAAT # Left flank : GATAACTAGTTTAGAAATAAAAAGATTATGTTTTAAAATTAATTTAACAATATAAATTACAACAAAACTTTTTATGGTTAATTCTAGCATATCCAATACCACCCCCTATTTATAAGTGAAAAACTCACCAATATCCTAGGAGGATAAAATATTCAAAACCCCCGTAGCCATCCACTACGGAATTACTATCCTAACTTGGATATTATATCATAATTATCTATACTAAAAACAGAAGAATTAAATGGTAAATAACATTTTAGTTTAGAATACTACGTTTATTTTAGGATAAAAATAACAAATAATTATATAGAATACGCTAATATTTTTCCAACCAACTTTAGCTTATAAACCTATCTTAGCTATTGAGATATAAGGCTTAAGGTAGGCTTTTCTTATATATTTATAAAATATTATAATCGGTTGGAAAATTTTCTTTAAAACCTTGTAAAACCAATGTCTATGTGCTATTCTTAAAAATAAGGAATGGCTATTTTACTATG # Right flank : TAGAAGTGGAAGATATAAGCCCTGTTGAAATATAGTCTAAAAAATTATAGGCAGAATTGTCCACCTATAATACTCAATATAAGAAAGTTGCAAAACAGTATAGTATTAGTGTCCTTTTATTTTAGTTTTGGTCATTACATAATTTTCCCACATATATATAGTAATAATGAATTCTCTTGGATAGTTAGATTTCTTCATTTGATATGTAATATTGAATTTTGATAAAAAATAGTTAGAACGTCTTAAATGCCAGGGAGAAGTTACTACCATTGCTGATGATCAATTTTTATCTTCCATTATCTTTATTGAATTTTGTATATTTTGATATGTGTTTCTTGATTTATCCTCTTTAATCAAACAACTATTTGGAATACCTAATGATTCTGTGAAATTAGACATAATATCTGCTTCAATATATTTATTATAGACTCCTCCATCCGAACATATAATGTTATTAGCATATCCCTTATTAAATAATTCAACTGCTTTTATAACTCTTT # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACAGTAACATAAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [70.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA //