Array 1 210323-208463 **** Predicted by CRISPRDetect 2.4 *** >NZ_JYZY01000006.1 Salmonella enterica subsp. enterica serovar Muenchen strain CVM N42480 N42480_contig_6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 210322 29 100.0 32 ............................. GCTGGCGGTGTACTCATCGCTTTGCACGGTTC 210261 29 100.0 32 ............................. GAACGCACGTCGCACAATACGACGGTTAAAAA 210200 29 100.0 32 ............................. CGCGCCACGGGTAAGACCTGGGAAGAGACGAT 210139 29 100.0 32 ............................. CTCAAGTAAACGTTAGCACCACGAATATAACC 210078 29 100.0 32 ............................. GGCATTGCGTGGTATCGGGTTTGCTAATATTT 210017 29 100.0 32 ............................. GCGCCCGTCGGGGGAAGCAAGGCGGACGGGAC 209956 29 100.0 32 ............................. TAGTCCATAGCCTCAGCCCGGCTTGTCATCCT 209895 29 100.0 32 ............................. ATTACGAGACATTGTGGAAATCCATCTACGGC 209834 29 100.0 32 ............................. AGGCGTGCATCAATTGCTATAAAGCCGTAGTC 209773 29 100.0 32 ............................. ACTGGTTGAGAAGATCCGCCGCAGAATCAGCG 209712 29 100.0 32 ............................. ATCACATCACGCAGATATTATCTCATTACAGC 209651 29 100.0 32 ............................. CGCCTACGCCTGGGAGCTAATCCCCGACAGCA 209590 29 100.0 32 ............................. CCCGTTCCACGGCGAGAAAACCCCGTCCTGCG 209529 29 100.0 32 ............................. CCGTTGACGGCGAGCGCAGACCTCGGAAATAA 209468 29 96.6 32 ............................T TGCCATAGAAGAATCTGACCCTGATAACTGGC 209407 29 100.0 32 ............................. GCGTCCTCGCCAGCGTCAGCCGGGTAATACAA 209346 29 100.0 32 ............................. GCCTGCGTGAAAAACAGGTTCATCAGGATGCC 209285 29 100.0 32 ............................. CTCCTTGAGCAGGGGAAACCCTGCCTTTTCCA 209224 29 100.0 32 ............................. GGCTGAGAAGATCGGCGGGCAAACTGCCTATG 209163 29 100.0 32 ............................. TTTATTCGCCGAAAGAGGGCGACATAGTTATT 209102 29 100.0 32 ............................. AGCCAGGCGTTATCTTCTGGCGTTCTTAGCGG 209041 29 100.0 32 ............................. GTGACAACGGTCCCGGCGCTGGAAAAGGTGAA 208980 29 100.0 32 ............................. CCAGATAGAGGCTTTAACATGAAATCAATTAC 208919 29 100.0 32 ............................. GGGGAGGGTGAATTTAACGAGCTGTATAAAGC 208858 29 100.0 32 ............................. CAAAAATGATTACTATAATCCCATGTTGAACA 208797 29 100.0 32 ............................. CTTCATCTCGCAGTACGTAAACGCCTGCATCA 208736 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 208675 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 208614 29 100.0 32 ............................. GCAGAAACAGAAACCGGATATGAGCCATCCAT 208553 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 208492 29 96.6 0 A............................ | A [208465] ========== ====== ====== ====== ============================= ================================ ================== 31 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCTTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGAACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGTGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 227596-226591 **** Predicted by CRISPRDetect 2.4 *** >NZ_JYZY01000006.1 Salmonella enterica subsp. enterica serovar Muenchen strain CVM N42480 N42480_contig_6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 227595 29 100.0 32 ............................. GTTGCACGCATTCCAGTGTGGTTTAAAAAACA 227534 29 100.0 32 ............................. AACAACCCGCTAGTATTACAACGACTAAAAGT 227473 29 100.0 32 ............................. CGGGCGTACACCAGAACGGCTATTCAGGCACG 227412 29 100.0 32 ............................. GCGCAGTATCAGGGAACGGCCGTTATTACGGT 227351 29 100.0 32 ............................. GAGCGTTTAAAAATGCTCGATACGCTCCAGCA 227290 29 100.0 32 ............................. ATTCTTGACTGGCTCGATACGCTCGCATCCAT 227229 29 100.0 32 ............................. ATTCTTGACTGGCTCGATACGCTCGCATCCAT 227168 29 96.6 32 ................A............ TCACAGTTGAGTTTTGCCGAATTTTTCAACAC 227107 29 100.0 32 ............................. GCCGGACTCAACGGCGAGAACGTCGGGGACTT 227046 29 100.0 32 ............................. CAGACTGTGGATCTCAATCGGCCCGGGCAACT 226985 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 226924 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 226863 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 226802 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 226741 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 226679 29 100.0 32 ............................. GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT 226618 28 89.7 0 ............T...........G-... | ========== ====== ====== ====== ============================= ================================= ================== 17 29 98.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTTATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCGCGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCTATTATGTTGGTGGAATGTAGTGCTGGTAAAAAGTAGTTTATAAACAATTATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //