Array 1 46613-45830 **** Predicted by CRISPRDetect 2.4 *** >NZ_NMQU01000074.1 Amycolatopsis alba DSM 44262 contig74, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 46612 37 100.0 40 ..................................... ACCAGGCCTGCCCTGCCCGCGACACGTGCGGCCCCGGAGA 46535 37 100.0 37 ..................................... GGCGATGTCCCCTCGCCAGTAGGCGTTGATTGCCTCA 46461 37 100.0 37 ..................................... ACCGGGTGCTCGCGCATGGTGCGGGCGTAGAGGATGG 46387 37 100.0 38 ..................................... CTGGAGGTGCTGCTCACTGGAGCGGGGTTCCACCTGCG 46312 37 100.0 38 ..................................... AGGAAAACTGAAGGTCTGTCAGCGGGAACCCAAGGGTG 46237 37 100.0 38 ..................................... ACCGACAGCCTCGGCAACGTCCTTGAAGCCAGCGGCGG 46162 37 100.0 37 ..................................... CCGCGCTGACTGGCGAGAACCACGTCACCTCCTCCAG 46088 37 100.0 37 ..................................... GTCGCTCAGCACCTCGAAGTGACGCCCGTCCCGCGTG 46014 37 97.3 35 ......................A.............. TCGCCGCTGTTCGCGATCGTGGCCCTGCTGGTCGC 45942 36 97.3 38 ............-........................ CTCTTCGGGGCGTGGCCCGCATCGGTCACCGTCGACTA 45868 37 97.3 0 ...........................C......... | CC [45841] ========== ====== ====== ====== ===================================== ======================================== ================== 11 37 99.3 38 GTGGCATCGGCCCTTCGGGGCCGATGAGGATCGCAAC # Left flank : CAGCGCCCGCCACTCCCCGCAGAAGATTCGCGCCAAGTTCCTTATGCGGGACCCCCACACGCCCACCGTGCTTCTCCGCAGCCAGCAACCCCTGCTGCCACAACCCGCACGCCTTACCGGCGTCATGAAACAACCCCAACGCGGAACCGAGCTCCCTCGCGCCGAACTCCGCCGCGAACCGACCAGCCAACACCGCCGTCGACCGAGCATGCCCCGACAGCAACTGACGCCGCCCCAACACATTCGCACTATGCGCCCACATACATCCCCCGCCGCACGACCGGCCACCGTGAAAACACGCCACACCCTACGGGCACCACGCCATCCCAGACCGATCCGCCACACACGGGAAAGTCAGGGCCAAGCACTCCCCAGCCACAACTTCGGAGCAGGGAGCGTAGGACGACACGCCACGGCACACCGAACCGATACCCTGGCGTGTCGGCTTCAACTAGGACACAATGCCTGCACATTGAAAACAAAACCCCAGCATAAGCAGG # Right flank : TATCGGCCTCGAAAGCAGGCGTCATACTCGGCCGCCCCCTCAACGTTCGACATGAGTGTTGCGTTTCGCGGTTCAACTGCGATAAATCTGGTATGGCCAGGCCTCCAGCAGGACATGAGCCCGCACCGGATGCGGTGAGGTCGATACTGCGCGCCTGGGCAGAAGAGATCATCAGTACCGGCTATTCCGACGCGGTATCGCTGGACACGCTGAGCGAGACGTGGCGGCGCCGTCGGCGTTCACTGGCGGCAGCGATCACAGACGAGTACACCTGCGGAAGCATTACCGGAACTGCAGCGTGGCAGCCGGACGAGACTGGCAGCGGGCCCTATCCGCACACCAAGCGTTCCCAGGACACCTTCGGCCGGCGCGCCGGGATGCCCCCGCCCAGCGCCGCCTGACTCCACGACACCCAGCACCGCCTCCGCGCAGCGGACGCAGCGACATGGCCCCTTCGGATACTGACAGCGTCGAAGCGCCACACATCCACTAGACGGAGT # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGCATCGGCCCTTCGGGGCCGATGAGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-14.70,-15.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA // Array 2 54857-55479 **** Predicted by CRISPRDetect 2.4 *** >NZ_NMQU01000074.1 Amycolatopsis alba DSM 44262 contig74, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 54857 37 100.0 36 ..................................... AGCATCTCGACGGTCTGCTTCAGCGTGGCGGACCGC 54930 37 100.0 37 ..................................... TCGAAGGTGTCGACGACGGTCACCGCACCGGCGCTGT 55004 37 100.0 36 ..................................... GCCCTGCTGCTGACCGGACTGCGCGAACTGGGACGC 55077 37 100.0 36 ..................................... CCAGAATGGGACCGTGGGCCGATTTCCTTACCTGCA 55150 37 100.0 35 ..................................... GCCACCGTGTCCGAACTCAACTCGCAGCGCAGGAA 55222 37 100.0 36 ..................................... CCGAGCGGGCATGGGATCGCGATGGACGCTCGGCAG 55295 37 97.3 37 ..............T...................... CGAGCCGAACGCTGAACAGTCCGCTTCGTCAGCTGGG 55369 37 97.3 37 ..............T...................... ACCTGGAGCCGGTCCCAGTAGCGGCCCGAGGCGACCT 55443 37 89.2 0 ........A.....T..................G.T. | ========== ====== ====== ====== ===================================== ===================================== ================== 9 37 98.2 36 GTGGCATCGGCCCTCCGGGGCCGATGAGGATCGCAAC # Left flank : CTGCTCCCCAACGTGCAGGCTCGGCTGCTCGCACGGAACCTGAGAGCAGATCAGCCTGTATACCAACCGTGGATCGCGAGCTGACGTGGAACTGTTGATCACCTACGACGTCGAAACCACCACACCCGCTGGACGCAGGCGACTACGTCACGTCGCGCAAGCCTGCGAAACCTACGGAGTCCGGGTGCAGAAGTCGGTGTTCGAGATCGTGATGAGCGAGGCACAGCTGCTGCTCCTGCGCCACCGTCTCCTCGACATCATTCACCCCCGCTTCGACAGCATCCGTGTCTACCGCCTCCCCGCCGGATCCTTCGCCAACGCCGCCCATCTCGGACACTCGCCGCCGGCGGGTCACGACACCCCACTCATCTTCTGACACAAGGTGAGAGCAGGAAGCGTGGCCAGACACGCCAGCAGGTTCCGAAGCGAAACCCGGGCGTGTCGATAACAGCAAAGGCACCATGAACCACTGGAATGACAGAATTCCCAGCTTGAGCAGG # Right flank : GGAAGAGCGGCGGGTAGGGAAAGAGTGGAGATCCTGGTGGTTCGCGGTTCCTGCAAAAAACATGGTCAGACGTTGACACGAAGCACGTGTCATTACGACTAGCACGACTCACA # Questionable array : NO Score: 3.17 # Score Detail : 1:0, 2:0, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGCATCGGCCCTCCGGGGCCGATGAGGATCGCAAC # Alternate repeat : GTGGCATCGGCCCTTCGGGGCCGATGAGGATCGCAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-16.80,-14.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0 Confidence: HIGH] # Array family : NA // Array 1 23562-23762 **** Predicted by CRISPRDetect 2.4 *** >NZ_NMQU01000140.1 Amycolatopsis alba DSM 44262 contig140, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 23562 29 100.0 32 ............................. ATGGCCGCGCAGGGACAGGACTGGCGAACCAA 23623 29 93.1 32 .............T.G............. ACGTGTACCGACGCGCCACCACCGAAACCGAA 23684 27 79.3 23 ...............--..C.T.CC.... CCTGCTGATGAAGGCGTGGGCTT 23734 29 51.7 0 ....CTTG.T.G.A....CT.C.C.GG.C | ========== ====== ====== ====== ============================= ================================ ================== 4 29 81.0 29 GTGCTCCCCGCAGGCACGGGGATGATCCG # Left flank : CGTGGCCATGCTGGTCATGCCGGGCCCTGGCAGCGTGGTTGGAACAGGCTCGTCGCAGGGATCTATTGCGCCGTTGCCTGGGTGGTGCCGAGCTTGGTGACCGTGCAGCGGGCGATCCACCGGGATCTGACCCGTGGTGATCGTGCTGGGCTTGAAAGCTCGCCCGCCTGGTTTGCACCTACGGTCGGCCGTGCGAGCCGTAGGGAGGCTCGCCTTCCAACGCAGGGCGCCGGTTCTCGCTTTGCTCGAGCTCCTGACACACGCCTCAGTCAGTCAGGTCCAAGCAGGCGCTGACCCGTGATGTTCGAGACTCTGCTGGTCGGCTGGAGCAAGCTGCGGTCTTGTTGATGCGGTCCGACATAGTCGAGCACTGGTACAACCGATGTTGTGCTCCAGGTTTGCAGTTCGCGGTGCTCTTGGAAGCCGCCTACCTCAGGATCTTCACATGTAAACCGAAGCAGATTGGTCTGAGGGTGCGCTATCATCCCAGGTCAGTAAGT # Right flank : CCGGCCTCTCGTCGTCCCGGCTGGCCGCCGAGCGTCGCCGTGGCCCTCCAGGTGGAGGGCCAAGCCCGATTCCCACACGCGTTTGGCGTCGCTGGTCAGAACGTGTTTTCCCGAACCTGCATGAACCCAAAACGGTGCGCCATCTCCACCAACGCCAGCCGGATCAGGCGACGTCGCGACTCCGCGTCCATTCCCGGCACCGAGGACACTGAAACGAACAGCTCGGTCAGCTGATCGGGGCGATCGGTCGGCCCCAAGGCGGCAAGGTCGAGGACGTCGGCCAGCACCAGCTGGTACGTGGCCTGCTGGTCGTGTCGCGACTCAACGCCGATCGACAGCTCGACCTGCGGAACACCGGCCCAGTGAAACCTCGTCGAGGCGCCGTTCGTGACGCCGTCGATCAGCTGCGGTAGCAGGTCGGTTGCGATGTCCCAGGCCGCCACGAAGAACTCGATCAGCTCGTCCATCGGCCAGCGCAAATCCTGCTCGGGATAACCTAT # Questionable array : NO Score: 2.85 # Score Detail : 1:0, 2:3, 3:0, 4:0.05, 5:-1.5, 6:0.25, 7:-0.24, 8:0.6, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCAGGCACGGGGATGATCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCAGGCGCGGGGCTGATCCC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.10,-10.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-18] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [51.7-20.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //