Array 1 716-28 **** Predicted by CRISPRDetect 2.4 *** >NZ_UHIS01000002.1 Vibrio metschnikovii strain NCTC8563, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 715 28 100.0 32 ............................ TTGTTCTAATGTCGTCACTTGATGCGATTTCG 655 28 100.0 32 ............................ AGTATCGTCAACATCACCAACCTGCTGCTGCT 595 28 100.0 32 ............................ TCGGCTCTCAGGTCATGTGATGATAATCGTTG 535 28 100.0 32 ............................ GCATTACTGCGCCTTACGAATACAAGCGCCTT 475 28 100.0 32 ............................ TCTATACATCCTCATTAGTCTTTTACACTCTG 415 28 100.0 32 ............................ TTTCTTGGTTAGCTTGAGACCAATGAAGGCAA 355 28 100.0 32 ............................ TTTTTAGCAATTTCTTTAGCTTCTGTTGGAGA 295 28 100.0 32 ............................ GATCAACTTCAACAAAGCCGGATTTCTTTCCT 235 28 100.0 32 ............................ TATTCTCAGTAAGGATGGGAAAATGTGGTATT 175 28 100.0 32 ............................ CTAACCATAGCCCTAACCTCATTGGATGCCTG 115 28 100.0 32 ............................ GCTTGGCACATCCACTTGCCGCCGAATTTTTT 55 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 12 28 100.0 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : AAGCTTTTTGCATGATTTACAAGGTTTAAACTGGCTTGGTCCGTTATCTGGTTACTGCCAAGTGAGTGAGATATTGGCTATTCCTGAACAGGTGCAATATCGAGTGATCTCAGTAAAGCGTAGCAATTTAAGTCAAGCGAAGCTCAGACGTTTGATCGCTCGCGGTAGCATCGATAAAGAAGGTGAAAAACGTTACAAAGTGAAAATGCTTAGCCAAGGTTTTGATAATCCGTACCTAGATTTATTCAGCAGTTCGACGAAGCAGGTACATCGTAAATTTTTTGAGTTTGGTGAAATACAGCCACTGCCAGTATCCGGAAAGTTTGATTCCTATGGGCTAAGTCATACCACTACGGTTCCTTGGTTTTAACCCTATTTTTTTGCTCTTTAAAAATAATCTTTAAATACAAATAGTTACATCGGGTGATTTAAAATAGGGTAAAAATACATTTTTTGCTCTAACTGCTTGTTGTAACTTATTTTTATGTTGTTATTCTATA # Right flank : ATCTCTGATTAAATAGATTTACGGTTTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [31.7-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 29862-31143 **** Predicted by CRISPRDetect 2.4 *** >NZ_UHIS01000005.1 Vibrio metschnikovii strain NCTC8563, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 29862 32 100.0 33 ................................ CAGAAAGACAAAAGAAAGATAGTAAAAACTGTC 29927 32 100.0 34 ................................ TTGCCCAGCCAATAATTTCACTTGCCGCATCGTT 29993 32 100.0 33 ................................ GCTCGAGTCAGCTATAGACAACGCATCAGCCGC 30058 32 100.0 34 ................................ TCCGCAAGACTTTATGCCCAGCGATGAGACAGAA 30124 32 100.0 34 ................................ ACTATTGATGTCAGTTTCATAGCTCTTGGGTTTG 30190 32 100.0 34 ................................ AATCAGCCAATCTGGTATATCCAGTTCCATTAAA 30256 32 100.0 37 ................................ TTGTTGAGATATGGGCGGGTTTTGATTGAGTCAAAAG 30325 32 100.0 33 ................................ AGCTGCAAGACGTCTCTTATCGGCTAGCGATGG 30390 32 100.0 34 ................................ CCTTCAACACGCCAGAAGTTGCACCATCACGATG 30456 32 100.0 33 ................................ GACTGAATTTAGTTGCTGTTGGCCCTCTTTTTG 30521 32 100.0 35 ................................ ACTTTCAAATATCTGGTACTGGCTGTAAACACCTT 30588 32 100.0 35 ................................ GTAGTGCGATAGATACGGCAATCAGTGAAGGTAAA 30655 32 100.0 33 ................................ AAGTTATTAATATTGATTTTGATAATCAACGTC 30720 32 100.0 32 ................................ TCAGCGATTTGTATATCTTGGTTCATCAAATC 30784 32 100.0 33 ................................ TTTTACCTTTGGATTAGTTATGGATGCTATATT 30849 32 100.0 33 ................................ AAGTTATTAATATTGATTTTGATAATCAACGTC 30914 32 100.0 34 ................................ AAGTTAGTAAATAACGAGTTAGTTTTACCGACAG 30980 32 100.0 34 ................................ CTTGTTTATGAGCCCAAGGTTAGGACGATATCTG 31046 32 100.0 34 ................................ CAAGATTGTTGAAGATAGGTATGTCATTGCGCCC 31112 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ===================================== ================== 20 32 100.0 34 GTCGCGTCTCCCGCAGGCGCGTGGATTGAAAC # Left flank : ATTTGTGATCAAAAAATAAGGAGAGTACGCCATGATGGTATTGGTCACCTACGATGTATCTTTTGCTAGTGAAGATGGACAAAAACGTCTCAGGCAATTAGCAAAAGTCTGCTTAGACTATGGTATGAGAGTGCAATATTCAGTGTTTGAATGTGAAATAGACTCAACACAATGGTTAGAATTTAAAGATAAACTTTTATCTATTTATGATCCTGAAGTCGACAGTTTGCGTTTTTATAAGCTCGGTAAAAACTGGCAAAACAAAGTAGAGCACCATGGCGCGAAAGAAGCGATAGATATATTTAGAGATACCCTAATTTTATAATCGCTAGGTTGGAGTGCTCACTAAAACATTGGGGAGCTAGCGATTGCATAAGTTCTTTAAAAATATAGAAAATGTTTATTTTTATAGCTTTACACAAAATAGTTTTCTTCTACCGCGTAAAGTTAGCGGCAAACCATAATATATGCTAGTTTACACGTGCCTTTCACAATAGGCA # Right flank : CACCATTACTGATAACTCGTATCTTTCTGACAAAAGTCCCACCTCACAAGAACATAGTGAAACTCGACTCGCTTAGGTCGACAGTTTGCTGTTACGGCAGCAAATTACCGGGCTTCACTTAACGCTCAACCATACTTTCTTTAAGCTGTTGCCTTGTATCCGGTTTTAGATAACTCATCATAATAAAACTGAGTAATCCACACAGTAGGGTCGGGACGATGGGATGGATGCCCGCTAAATCAGGTTTTAACCACATTAAACTCGTGTAGGTGGAAAGCCCAACGATCATTGAACTCAATGCGCCTGTCGATGAAGACTTTTTCCAATATAAACCGAGCACCAAAGGCCAGAGAAATACCGCTTGTAAGCCTCCGAGTGCCATTAAGTTAAGCCAGACAATCATCTCCGGTGGATTGGTTGCAGCAAAAAAAACTAACAAAGCAAAAATCATCGTCACCCACAAAGATAAGCGAGTCATCTTACTTTCTGCCTGCGGCTCA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGTCTCCCGCAGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.20,-7.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [60.0-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.37 Confidence: HIGH] # Array family : NA // Array 2 92279-92666 **** Predicted by CRISPRDetect 2.4 *** >NZ_UHIS01000005.1 Vibrio metschnikovii strain NCTC8563, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 92279 28 100.0 32 ............................ TTCGTTGCTGGCGCTGGCGTAACAATCATCGG 92339 28 100.0 32 ............................ AGTTGTGCGTTCAGCGAACCCCGTATAGTAAT 92399 28 100.0 32 ............................ AGTCATACCAAAGGGTAAGGACCCGAACGTTT 92459 28 100.0 32 ............................ AATAGACATTGGATTGACGAGAACCAAACGTC 92519 28 100.0 32 ............................ GCGCAGCCAAAAACGCAAAACACTCGCCAAGG 92579 28 96.4 31 .............C.............. CAAACTCGCTCTAATCCAAATCAAGCAACCA 92638 28 92.9 0 ...T.......T................ | A [92661] ========== ====== ====== ====== ============================ ================================ ================== 7 28 98.5 32 GTTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : GCCTTTCGAGATATCAAAACCATTTAAAGTGCTGTTTGATAAAATAGGAATGGTTGAAAGCCGATTAACTGACATTCCTGCACCGAAGCACGAAGATTTCCCAACTTATGTTCATGGTGACAAAGGTTTGGTTTGGGAGCTTTTCGATTGCATCAAGTGGCTAAGTCGAGATAACAATCAACTGGCTAAAAACTATTTAAAAAAGCTATCAGAAAAACTGTGAATGTTTGTATAACAAAGCGTTCAAGAGGGATTCGCAACGCGTGGCATTTTCGTTATGCTTTGATTTTATTGGTTTTTAGTGTGATGCGGTGAGTTGGTCGCTGCGTTGCTCACCCCTTAACGCGGCGTTAACTGGCAATGAAATTACCCATCTTTTTTCGTTGAATTTTAAGTTATTGATTTATATTAATAATAAATCGAGTGAAAAATAAAAGGTTATTTTGAGAAATTTGATGTAATTACCATTATTAACAATAGGTTACTGCTAAAGTTTCATA # Right flank : ATTGGTAATTTTGGCATTTGGGATCGGCCAGTTAACAAAGCGTTAAAGAGGGATTCGCAACGCGTAGCATTTTCGTTATGCTTTGATTTTATTAGTTTTCAGTGTAATGCGGTGAGTTGGTAGTTGCGTTGCTCACCCCTTAACGCGGCGTTATGCAGTTGGAGAGTGTATGAAGTTGGTCGAAAGTCTTGAAGAGCTTCAAGCAAATATTTCTGAACTTGAAAGAATCAGAACTTCTGGTTCAAAGTCAGAGAGGGAAGAGTTCTTATCTTTAATAAAAAAAGGCACTTGCTTTGTGCCCTATATTTTTGCCGGTTCATTGTATTTTGCTCCTTCACGCTTCGTAGGATATATAGACAATTCTTTAGAAAAACATAAGAAAAACAGTAATAAAGATGGGCGGGTAACGAATAAAGCCATAGATCAAGTACTAGATACGGTAGCGTCGAGTAATTCTAGTCTTGAAAGTGCTTATGTTTCATACTGTAGCTCACTAGGCT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 96399-96846 **** Predicted by CRISPRDetect 2.4 *** >NZ_UHIS01000005.1 Vibrio metschnikovii strain NCTC8563, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 96399 28 100.0 32 ............................ TCTAAGTTCAGTTCCTGTCGTTAGCATATAAC 96459 28 100.0 32 ............................ GAACATATAGACGGATACGGAATTGTCAGGCA 96519 28 100.0 32 ............................ TCTTTTTTTTCATTCTAGCTTAAAAATCACGG 96579 28 100.0 32 ............................ TAATACAGACCCTCGTTCATGTGAAGGCGAAC 96639 28 100.0 32 ............................ TTGTAAGATTTTTCTATCGCTGCTCTGGCGAC 96699 28 100.0 32 ............................ AACGAATATCATTAGGTAAATAACCGAGCGCT 96759 28 100.0 32 ............................ GTCAAAGCTTGCATTGACTACGTTTTCAAACG 96819 28 96.4 0 ........................A... | ========== ====== ====== ====== ============================ ================================ ================== 8 28 99.5 32 GTTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : TTTCCGGCTCTGCTCTGATAGCTTGTGTTCGTAAAAGGTTCAATTGTCGCTGAAAGGTCTCTTCCTTTGGTGTTGTTGACCCCTTGATTCCGCAGGCTAATTCGCTTCAACTTATTTGGGATCTTATCGGCAACAATGATTGTTGAAAGTAGGCTGGTTTTTCATTTTGAGTTAAGCTGCTTCGAACAAATGAAAATTGTAAAAGTTTAATATAATCAATAAGTAATAAAGCATAACAAACGCTTCAAGAGGGACTTCTAACGCGCGGCATTTTTATTATGCGTTGGTTTTTGTGGTTACGGTGTTATGCGGAAAGTTGGTAGTAGCGTTGTCAGCCCCTTAAGCGGGCGTTAACTGGCAATAAAATTACCCATCTTTTTTCGTTGAATTTTAAGTCATTGATTTATATTAATAATAAATCGAGTGAAAAATAAAAGGTTATTTTGAGAAATTTGATGTAATTACTTTTATTAACAATAAGTTACTGATAGAGTTTCATT # Right flank : AATGGGTAATTTTGGCATTTGGGATCGGCCAGTTAACAAAGCGTTCAAGAGGGATTCGCAACGCGTAGCATTTTCGTTATGCTTTGATTTTATTAGTTTTCAGTGCAATGCGGTGAGTTGGCAGTTGCGTTGCTCACCCCTTAACGCGGCGTTATGCCTTTGGAGGAAAAATGGAACAACTCAGGTCTTTAATAGAGCAGTTTCGGCTGGCTATGGAAGCTCTTAGCCCACATGACTTTGATGGGACTTCTCTTGCTGTAAGCGAGTTTCCTCATGCGTGTTGTGATGATTGCTCACAGTTATTGGCGGCTTATTTAACTGATAACGGTTTCCCTCAGGCAAAGTTAATCCGAGGTGAAAATGGCGGTTTTGGGCAAGAATTAGGCTCCCATGTTTGGCTATATTTGAATGGGCTGCATATTGACATTACAGCAGACCAATTTAATGAGTATGGTTATGAGAATCCATCTGTGATTTTATCTGATCACAGTGAATTCCTG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [80.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 4 321874-321246 **** Predicted by CRISPRDetect 2.4 *** >NZ_UHIS01000005.1 Vibrio metschnikovii strain NCTC8563, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 321873 28 100.0 32 ............................ TTCTTGACATTGAAAAGGTTCAGTTACAAGTC 321813 28 100.0 32 ............................ TTTTGATTTATCCAATTACTTAACGTTTATAC 321753 28 100.0 32 ............................ TGTATATACACCGTACAGAAATGACAGCGTCA 321693 28 100.0 32 ............................ ATGCTTACGACTCATTTCATAAACATCATCGG 321633 28 100.0 32 ............................ GGACCTAGACAGAGCGCGTCCGCTTCGGGTTT 321573 28 100.0 32 ............................ GCCTTTGGCGACTGCTTGGCCGTCTTTATCAA 321513 28 100.0 32 ............................ AGTAATTCTTCCGATCGTTGTCCAGTCATTTG 321453 28 100.0 32 ............................ TATCTGGTATATCGTTAATAGTGAATCCAGAC 321393 28 96.4 32 ..............C............. TGCTTGGTCGAACTGGATGCCTTCGTCTTCAT 321333 28 100.0 31 ............................ CAAACTCGCTCTAATCCAAATCAAGCAACCA 321274 28 89.3 0 ...T.......T.T.............. | A [321250] ========== ====== ====== ====== ============================ ================================ ================== 11 28 98.7 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : AATGAAGCTCCATTGGCATATATGTACGAACAAGCATCTTTAACCGGGGTTTATTTTGGTTCTGAAACTGATGAAGCGTGCATTGAAATTATTTGTCTCATTTTACAAGGTCAGAATCCAAATGTTCGCTTTTGGCAAGGAAAGAAATGTGAAGACAAATTTGGCTTGAAGTTTGAAGAGTTTTTCTATACCTCGAATATTAAAGCCCAAGAGTTGGGTGTAATCTAATCACATAACAAACGCTTCAAGAGGGACAGCCAACGCGTGGCATTTTTACTGTGCGTTGATTTCGGTGGTTACGGTGTTATGCGGAAAGTTGGTAGTAGCGTTGGCTGCCCCTTAAGCGGGCGTTAACTGGCAATGAAATTACCCATCTTTTTTCGTTGAATTTTAAGTTATTGATTTATATTAATAATAAATCGAGTTAAAAATAAAAGGTTATTTTGAGAAATTTGATGTAATTACTTTTATTAACAATAGGTTACTGATACAGTTTCATA # Right flank : TTGGTGATTTTGGCATTTGGGATCGGCCAGTTAACAAAGCGTTAAAGAGGGATTCGCAACGCGTAGCATTTTCGTTATGCTTTGATTTTATTAGTTTTCAGTGTAATGCGGTGAGTTGACAGTTGCGTTGCTCACCCCTTAACGCGGCGTTATGCTTTATTGAACCTCAGCAAAATCAATATATAAATTTTAATGGGAAAGCTTGGTCTGATTTAGAAGTTTTCCTATTCTAATTTATTGATATTATGAGTTTATTGTTCTTTTTTGTGGCGATTGAAAGTTGAACGATGCTTTGGTGTTTTTGTCGGGTTTTGCTCTGATAAATTGTGTATGCAAAAGGTTCGATTATCGCTGAAAAGTCTCTTTCTTTGGTGTTGCTGGCTCACTGATTCCACCGGCTATTTCGCTTCAGCATGTTTGGGATCTCATGAACATCTTGTTTGCTGAAAGTGTTTGGTGAGCGCAAGTTTATCGATGATTTGGCGCTTTTTTCCGGCTCT # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 5 343379-342990 **** Predicted by CRISPRDetect 2.4 *** >NZ_UHIS01000005.1 Vibrio metschnikovii strain NCTC8563, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 343378 28 100.0 32 ............................ GAGAACGTATTGAATAAAACGTCTTACACATT 343318 28 100.0 32 ............................ TCACGGCGTCCCATACATGAGCCGGAGAATGT 343258 28 100.0 32 ............................ TAACCCGTTAAACTTTTTTGCAATGTTCGCCC 343198 28 100.0 32 ............................ AAATTAACGGCTGAAAAGCTCATAGGGGAGCT 343138 28 100.0 32 ............................ AGCGTGCATTTGCCGCATCAAGCTCCTGCTCT 343078 28 100.0 32 ............................ TTGGTCAGTTGCATCGTTTGTATGCCGATCAT 343018 28 100.0 0 ............................ | A [342994] ========== ====== ====== ====== ============================ ================================ ================== 7 28 100.0 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : TTTCCGGCTCCGCCCTGATAAATTTTGTTCGTAAAAGATTCAATTGTCGCTAAAAGGTCTCTTCCTTTGGTGTTATTGACCCCTTGATTCCGTAGGCTAATTCGCTTTAACTTGTTTGGGATCTTATCGACAACAATGATTGCTGAAAGTAGGCAAGTTTATCATTTTGAGTTAAAGTTTCTTGAACCAATAAATGTTGGAAAAGTTCAATTTAATCAATAAGTAATAAAACATAACAAACACTTCAAGAGGGACTTCCAACGCACAGCATTTTCATTATGCGTTGATTTCGGTGGTTTCAGTGTTGTGCGGAAAGTTGGTAGTCGCGTTGTCAGCCCCTTAAGTGGGCGTTAACTGGCAATGAAATTACCCATCTTTTTTCGTTGAATTTTAAGTTATTGATTTATATTAATAATAAATCGAGTGAAAAATAAAAGGTTATTTTGAGAAATTTGATGTAATTACTATTATTAACAATAGGTTACTGCTAAAGTTTCATA # Right flank : TTGGTAATTTTGGCATTTGGGATCGGCCAGTTAACAAAGCGTTAAAGAGGGATTCGCAACGCGTAGCATTTTCGTTATGCATTGATTTTATTAGTTTTTAGTGTAATGCAGTTAGTTGGTAGTCGCGTTGCTCACCCCTTAACGCGGCGTTAAGCAGCAGCTTGTAAACAATAACTTGTATACAAGCTACTGAGAGTACATATCAAGCAACTTGGATGTTACACCACTCGGCAATTTCATCCGCTAATGAATCTATCTTTACATGCGAGCCAACGTGAAAGTTATGTGGTTTTAAGAGCCAGATAAACTTGTCTAATTCGTTCTCGATTTCAATCTGTGCATCTCTTTTCAATGAGTCGTCAGGCAGCATTAAGAACACGGCATTCGCTTTGGTTTTTAGGTGATTAGATGCGATATCTATGTCTCTATATCCATCAAACAAATTGCACTTTACTCGTTGGACATCTGAATAGGCAGTAGATACAAGAGTAGCTACACCA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.10,-8.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,5.14 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //