Array 1 1129224-1131327 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP056341.1 Citrobacter sp. RHBSTW-00696 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1129224 29 100.0 32 ............................. ACGAATCCTTGAGAGCTGGTATGGTCGCAATT 1129285 29 100.0 32 ............................. ATTTTATAGGCACACCCGCCGATAAAATTGCA 1129346 29 100.0 32 ............................. TTCTCGCGCAACGACAAAATGATGGAATTCTC 1129407 29 100.0 32 ............................. CGCACATAGGAATTGCTGTGCCACATCGGCTG 1129468 29 100.0 32 ............................. CGGTCCACGTGGCCGCTTTTCTTTTCAAAACG 1129529 29 100.0 32 ............................. GGTCGTCACCAGCAGGATGTCGTTATCGGCGT 1129590 29 100.0 32 ............................. CGGGAGTATATCTACCGTACCACAGGTAAAGA 1129651 29 100.0 32 ............................. TTGATTGAAATGCTGAAAACTCGCCAATTCCG 1129712 29 100.0 32 ............................. GGCTTTGAGTATCAACCTAACTGCCAGATCAA 1129773 29 100.0 32 ............................. GTCAGCCAGCGTGGTGTCGATGTAGGCATAGC 1129834 29 100.0 32 ............................. CATGCTGGTTACTGCCCAGGTCATCAGCGCCT 1129895 29 100.0 32 ............................. AGCGGAAATTTAGCCTGATAACCATATGCAAA 1129956 29 100.0 32 ............................. CACCGTTACCGGGTCGCCGATTTTCGGCGCGC 1130017 29 100.0 32 ............................. TTTTTGCCGTTCGCCGGCTTCGCTTGCAACAC 1130078 29 100.0 32 ............................. CCTTTAGCATCGCTGATCTTGCGAACACGCCG 1130139 29 100.0 32 ............................. CATCTTGCGGGCTTCCCGTTCCGTTGGCGCGT 1130200 29 100.0 32 ............................. GAGATCTCGACCATTGATATTTCCGTTATTGG 1130261 29 100.0 32 ............................. CCACAATTTTAACCCCACGCAAAACGCCGTGA 1130322 29 100.0 32 ............................. GCCAAAATCACCGGGGAGAATGAGGCGCAACC 1130383 29 100.0 32 ............................. GGCTTTCTCCGCTGCCATTTCTCATGATTACA 1130444 29 100.0 32 ............................. CGCGGCTAACTCACGATCTATACGCTCACCCA 1130505 29 100.0 32 ............................. TAGATCGCATTACGATTAGCGAGCTACATAGA 1130566 29 100.0 32 ............................. GCCACCAGCGGCCCTACGTTCGGCCGCTTCTT 1130627 29 100.0 32 ............................. GTCGTGCAGTACCAGCAACAGATGTTGATCAC 1130688 29 100.0 32 ............................. TCTAAATTTGAGTTTCACCCGGCGACGGGTGG 1130749 29 100.0 32 ............................. CAATGCCGCCTTCTTCCGTGCTCAGGCGGTGC 1130810 29 100.0 32 ............................. GTGGAGAGAGTGATAAGCGCCGTAGATATCGA 1130871 29 100.0 32 ............................. CGGGGACACCGGTGCGGGAGACAGTGAATCAG 1130932 29 100.0 32 ............................. TAGCCCTGCGTTACGTCAGCGCTACGAAACGT 1130993 29 100.0 32 ............................. AAGACGTTTAACTATTTACAGGACTGGATCCG 1131054 29 100.0 33 ............................. CTGATCACTATACCCTTGAATACCACGCTCAAG 1131116 29 100.0 32 ............................. GAATCTACCAGGTTAATGAGCATGGAGATGTC 1131177 29 100.0 32 ............................. ACTTCATCCGGATCCGCGATGAGTACCGGCGA 1131238 29 100.0 32 ............................. CAATCTATTCAGTTTGTGCGTCATACCATCAT 1131299 29 93.1 0 ...........................GT | ========== ====== ====== ====== ============================= ================================= ================== 35 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CATTGATTGAAGAAGTACTGGCTGCCGGGGAAATTGAAATCCCTAAACCTTTTGCAGATGCCCAACCTCCGGCGATCCCTGAGCCTGTTTCATTGGGCGATGCAGGGCACAGGGGGTAGCGCATGAGTATGCTTGTTGTTGTCACCGAAAATGTTCCTGCTCGTTTGCGCGGTCGTCTGGCTGTCTGGTTATTAGAAGTTCGCGCAGGTGTTTACGTTGGCGATACCTCACGTAAGGTGCGAGAAATGATCTGGCATCAGGTCACTACCCTGGCAGACGAAGGGAATGTTGTTATGGCTTGGGCGGTGAATAATGAGTCTGGTTTTGATTTTCAAACATGGGGTGAAAACAGGCGCATGGCGGTGGAACTGGATGGATTAAGGTTAGTGTCATTCCATCCTTCGTAAAATCAATGGGTTATATTTCTTTAATAATGTGGAAAATTTGGTGAAATTTTTCTACGGCTATAATCCCTTTTAGATCAGTGATATAGTTTTAGA # Right flank : TAAGCGTCGTCTGAGTACCGTCTGGTCCCGAATCCAGGATCCTGTAACTTAAGCACCCACTTATTTTGCAGGTGGACACCTCATGCGCGCTAAAGAAAGACTTCCCCGGAAACACTATTCCCCTGAATTCAAAATGGAACTGGTCAGGCTGGCTCTTGAAGAAGAAGGCAGTATTGCCGCACTGGCCCGGAAACATGACGTCAATGATAACCTGCTCTTTAAATGGATAAGGCTCTGGCAGCGTGAAGGGCGGGTCTGTCGGCCCCGAAAAAACTCATCGTCGCTTCCTGCCCTGATACCCGTGCAGCTTCAGGCGGGCTCTTCTCTCCCAACCTTCGAACTACCATCCTGCTCTCCTCCCGCTACCTGCCACATAAAATGTCGGGGAGGAGAAATAACACTGACTCATCCCTCTGCTGAACTCATGAGCACTGTCCTGCGCGAACTGATGCGGGGGCCGGTATGATAAATCTTCCCGCAGGCACAAAAATCTGGCTGGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1133805-1135846 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP056341.1 Citrobacter sp. RHBSTW-00696 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1133805 29 100.0 32 ............................. AGGCACGTCTTCGGCAATTTGGCTGATACCCA 1133866 29 100.0 32 ............................. GATTTGATAAGCCGCTGATTGACACATCAAAC 1133927 29 100.0 32 ............................. GCGCTGGGGGAATTCACCCGCTACGGCAAATC 1133988 29 100.0 32 ............................. CCCGCCAAGATAAACCTCAACGAGCAATTCTT 1134049 29 100.0 32 ............................. CGGGAACCCACTGGCGTACAACACCAGTTCAG 1134110 29 100.0 32 ............................. GTATCAACCACATAGATATGACCATCACGCGG 1134171 29 100.0 32 ............................. TACTGAATGACTATGCCGAAACGCTGGAGAAC 1134232 29 100.0 32 ............................. TTGGCGATCATTTTCGGTAACAGCGGGGCCGC 1134293 29 100.0 32 ............................. CTGTTGCGCTCTGAACTCCGTCAGATTCACAA 1134354 29 100.0 32 ............................. TGGCCGCAACCGGAACAGGCGGCGCAGGCGGA 1134415 29 100.0 32 ............................. CTGGCCCGATAATTCTCCGCACTGTCGGTGGC 1134476 29 100.0 32 ............................. ACCTGGCGCCGGGTTTAAATCTTCCAGTACGC 1134537 29 100.0 32 ............................. TACCAACGTGTGCTGGTGGCACGATCTCGTGA 1134598 29 100.0 32 ............................. TTGCTTTTGCCATTCTGTTATCGCCCCTTATG 1134659 29 100.0 32 ............................. TCATCAGCCTTTACAACTGGTACATGCCCGTG 1134720 29 96.6 32 ..........T.................. TGCAGAGGGCGCGGCGCGCGCGCACTTCTCGG 1134781 29 100.0 32 ............................. GGTGAGGGTTCTCCAATCGAGTTGGGCCTTGT 1134842 29 100.0 32 ............................. TAAACGGCTCGGGCAAAAAATATCAGCAGCAG 1134903 29 100.0 32 ............................. GGGCGATAAAGCAAACTTCCGGGACCGTTAGT 1134964 29 100.0 32 ............................. CTCTTAATAAACGCGTTTAGCGGATTAGTCTC 1135025 29 100.0 32 ............................. TTGAGCGTGCAATTCTGGAGCATGCCGGGCTG 1135086 29 100.0 32 ............................. ATGTAGATATGGCCGCAGGTGGTTATATGCAG 1135147 29 100.0 32 ............................. AGAACGGCGGCGGGTACTGGCTGGGCCGGATT 1135208 29 100.0 32 ............................. CGGTACTTATCTTAGCCCACCGAACGCCGTCA 1135269 29 100.0 32 ............................. GAATGGCCAATAATTTTAAATTCAGCCAGCGC 1135330 29 100.0 32 ............................. AATTCATTGTCAGTATGTTGCTGTTGATAGTA 1135391 29 100.0 32 ............................. AACGCAAACACACCCTTGATGCCGCTGAATTT 1135452 29 100.0 32 ............................. AGTTGATGCGGCAAATCGTTGCGGCCGAAATG 1135513 29 100.0 32 ............................. ATCACCTCGACTGTTCAAAACTCGATAGTAAA 1135574 29 100.0 32 ............................. GCGGTCTCTATGTCGATGCGGTGGACTGAATA 1135635 29 100.0 32 ............................. CTGGAAGTCCCGCGTGATGTGATGGATGTTTT 1135696 29 96.6 32 ............A................ CCGGAGGTTCTGATGGTGTCCGAAACCATGTC 1135757 29 93.1 32 ..T................A......... GAACATCCTGAAGTACACATCAAAAACGAACC 1135818 29 86.2 0 ............T............T.TA | ========== ====== ====== ====== ============================= ================================ ================== 34 29 99.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAACGGCAGGCAGTCCGGCACCAAAAAGTGCTGCCGCTGCTGGCGTCACTGGAGGGGTGGCTGCGGGAGAAACAGAAAACCCTCTCAAGGCACTCAGAACTGGCGAAGGCGTTCGGGTATGCGCTGAACCAGTGGCCGGCGCTGATCCGCTATGCAGAAGATGGCTGGGTGGAGGTGGATAATAACATTGCCGAAAACGCCCTACGACGGGTCAGTCTGGGGAGAAAAAACTGGCTGTTCTTCGGCTCGGATCATGGTGGTGAGCGCGGTGCGTCACTGTACAGTCTTATCGGGACGTGCAAATTAAACGGCGTGGATCCGGAACGCTATCTGCATTATGTACTTGATGTCATCGCCGACTGGCCTGTGAACCGGGTGGGTGCTCTGCTCCCGTGGCGGGTTACTCTGCCTGCCTGACCAGCTTCACTTCGTCAATACGGTTCTCACTGCACGCTTACGGATAAACCGCGTGTTTATCTCCAGCATTTCCCCGGCAGTAA # Right flank : ACTTTGAAAGCAGAAATATTATGGGGCTGGATGGGTTACGAGGATTTTCCCGCCTTTGCCAGTTCTTTCACCAGCGGGAGCATAATGCGTACCACGTCGCGGCTACGGTGCTCTATCCTGCCCGGTAAGGCTTTATCGATATGCTGCTGGTTATCCAGTCGCACATCGTGCCAGCTGTTGCCTGCCGGGAACGAGGCGCTTTTGGCGCGCTGTTGATAGCCATCTTTCTTGCCCAGACTCCAGTTGGTTGCTTCAACGGAGAGCACGGCAATGCCCGCATCGTCGAAGACCTCTGCATCGTTACAACATCCAGTACCTTTCGGATAGTTTTTGTTCAGTCCCGGATTGGTGCTGGCTACGATACCGCGGCTGTGCGCGATGGCCAGCGCCCGGTCGCGCGTCAATTTTCGCACAGCTTCCGGGGTTTTCTTACCGCTATTGAAATAGAGCTTATCGCCGACGATCAGGTTATCGAGGTTGATAACCAGCAGCGTATTTTT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //