Array 1 11720-10448 **** Predicted by CRISPRDetect 2.4 *** >NZ_AZRA01000109.1 Sphaerotilus natans subsp. natans DSM 6575 X805_109, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 11719 37 100.0 36 ..................................... ACGGACATCAGCTATGAGGTGCAGATGCAGCGACTG 11646 37 100.0 34 ..................................... CTGCGTCCACGTCAGTATCATCGTAGATCATGCG 11575 37 100.0 35 ..................................... CGGTCGTCGTCCATCGCGGCCTGCTGGACGCCGTA 11503 37 100.0 37 ..................................... GCCGCCTTGTACTCCGCCGCAGTCGTGCCGAAATCAG 11429 37 100.0 34 ..................................... GGCACTGGCGGCCGAGTACGGTTGGCATGGGGCG 11358 37 100.0 36 ..................................... TTCGGCACCAGCTCGAAGACCTCTCGCACCGATCTG 11285 37 100.0 34 ..................................... TTGCTCATCGCGTCACCCCCTTGAAGTACCGGCA 11214 37 97.3 36 .T................................... CCGATCCGCGACATGCACAAGGCCACGCGCTGGGAG 11141 37 97.3 39 ..................G.................. GTTGACGATGCTGGACACGTCATCGATCGCGCCGCGGTC 11065 37 94.6 34 ..................G.....A............ GGCGTCAGGTTGACAGATACCTTAATAAGCCGAG 10994 37 100.0 36 ..................................... GCCTTGTCCTCTCCGCGCTTGGCGTACTTCCGATGC 10921 37 100.0 37 ..................................... ACGGTCTGCGGCCGGGTCGTGATGCTCAGGCCCTGGG 10847 36 94.6 38 .................-..........A........ AGAAGCTCCAGGAAAGCGAGGGTGGTTCCCGTGATCGC 10773 37 94.6 35 .................A..............A.... ACGCCTGCCGTGTCGCTCGCCCACTGTGCAAGGCC 10701 37 97.3 36 ............A........................ AATGTCATCATGATCATATAACTCGCCGATGATGTA 10628 37 100.0 35 ..................................... ACGGCATACGCCTGGGTCACGGCGTCCATGCGCTC 10556 37 100.0 35 ..................................... TCACTTGTCTAGAAAGATTTGTGATCGATGGGTGT 10484 37 83.8 0 ................GA...C...........GCC. | ========== ====== ====== ====== ===================================== ======================================= ================== 18 37 97.7 36 GGCGATATTCCCGGCGAGAGCTGGGTTGGATTGAAAC # Left flank : TGCTGCGTGGCTGGTTGCGACCGTCACGCTGCTGGAGCAGCGTGCAACCGGTCATCCTGCCGGGCATGGACAGCGGTCAGGCGCGGCGCACGCGCAAGCTGATCCTGCGGGCGCTGACCCATGCCGGCCTGGATCCCGACCTGGTCGAACAGATCGATTTTGGCCAGACCGGCTTCCTGCCCGAGTCGATCGATTACCGCTCCTTGTTCCTGAAGGATCGAGCAAGCTGGCGGCGCATGCCGGCGGTGCATGTACGCTTGCGCTTGCGCGCCCCTGTCATCGGCCCCATCGTGCTGGGCCAGGGGCGCAACGCCGGCGTCGGCACGCTGGTGCCGTGCGCGAACCCCGAGTGACGGCCGCCACCCGCGAGGTTCGCGCCAAGCCGCATCAAGCACTTGCCGACGCTCCGCACCTTCCCTCGACGTTTTTTCGCTGATAGCATCCCGGTTCGCGCAAAAAATGAAAAATACATCGGAAAATCAATGACTTGGCGCGGCGGA # Right flank : TCAAAAACTCAAAGTTACAAAAGATAACAGTGGCTTACTGATGCGCCATTACCATCCAGTTCCGGAATAAACCACGAACAAAGATGTCGGGAGAAGGCTGGGCATGGCGGAAAACCTCAACGATGAGGCGCTGCGGCGCGAGGTTCGGGCGGAGCTGAGTCGTGTCGAGGAGGATGCGACCTACACCAGCAAGGCGCATTTCGAGGCTGCGGATCGCTGGTCGGGCGTGCATCTGTGGGTGGGCATCGCGTCGGCGCTGATGGCGGCGCTGGCCGGCGCGTCGGCCTGGAAGAACCAGCCTGAGATCGCCTCGACCCTGGCGCTGATCTCGGGCGCGCTGACGGCCCTGTTGACCTTCCTCAATCCCCAGTCCCGTCATGCCGCCCATCAGCAGGCCGGCGCGCGCTTCGTTGCGCTGCGCAACGAGGCCCGACTGATGCGCCAGGTCGAGCTGCTTGCCACCGCATCGGCGGCGCTGCCGGACCTGGTCACTCGGCTCA # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:0, 3:3, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGCGATATTCCCGGCGAGAGCTGGGTTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [8,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.40,-10.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [23-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : NA // Array 1 1196-89 **** Predicted by CRISPRDetect 2.4 *** >NZ_AZRA01000004.1 Sphaerotilus natans subsp. natans DSM 6575 X805_4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 1195 28 100.0 32 ............................ ACTGGGCCCAGGCCGGCAACAGCGCAGTGCTA 1135 28 100.0 32 ............................ CTCGTCGATCACGCAGCGCTGCCGGATGTCCT 1075 28 100.0 32 ............................ TTCATGCGGGTTGATGCTTGCCAGCATCCCGA 1015 28 100.0 32 ............................ ATGCCCCGCTGGCAGGCCGGCCTTGTCTGGCT 955 28 100.0 32 ............................ AGCAACGCGCCGCGGCAGCGGATGCCACGCCT 895 28 100.0 32 ............................ AGCGTCCGGCGTTGAAGTCGATCACCGACTCG 835 28 100.0 32 ............................ AATCAGCGCCTCGTAAGCCACCGGCTCTTCGT 775 28 100.0 32 ............................ ACCATGCCCGGTGCGGTGGTTGTAGTAGCTGT 715 28 100.0 32 ............................ AGTGCCGGGCGCGCGGCGCGCCCCCTCAATTC 655 28 100.0 32 ............................ AGATCGCGCCTGAACTGAAGCAGTCCCTCAAC 595 28 100.0 32 ............................ CCTCGGCCTCTCGGCCTTGTTCGCGCAGCGCC 535 28 100.0 32 ............................ AAGTGGTCCTGTTGAGAGAAACGCGCGTGAAA 475 28 100.0 32 ............................ ACTACCCTAGGAACTACCATCATGCAAGCCAT 415 28 100.0 32 ............................ CCCTGAGCCCCCAGCGCCAGGGCAGCGCCCGG 355 28 100.0 32 ............................ ATGTTGTAACGGTTGTCGTACTCGCGCTTCCA 295 28 100.0 32 ............................ CGCCAGGATCGCGACGTGCTCGGGCTGCACGA 235 28 100.0 32 ............................ GCCAGCGCCGCGATCACGGCGCTCGACTTGCT 175 28 100.0 32 ............................ ATCGGGAGGGGTTGCCGGAGACGCTGACCCAA 115 27 85.7 0 .....................-...GGC | ========== ====== ====== ====== ============================ ================================ ================== 19 28 99.2 32 GTGAACTGCCGGGTAGGCAGCTCAGAAA # Left flank : CTGGCCATGCTGATGGACACGGCGTGGCTGCGGGGCATGCGCGATCACCTGACGATCGGCGACATCGCTGCCGTGCCGGCACAGGCTCGGCATTGCTGCGTGTCGCGACGGCAATCCCACAGCAGCCCGGAGCGCATGCGCCGCCGGCTGATGCGGCGTCAGCAGATCGACGAGGCCACCGCGCGCGAGCGCATCCCCGATCAGGTCGCAGCCTTCCTGAAGCTGCCGAGCCTGCAACTGCGCAGCAGCAGCACGGGCCAGCACTTCCGGCTGTTCATCCAGCACGGCCCGCCGCAAGACGCTCCGGTGCCCGGCGCCTTCAACGCCTACGGTCTCAGCGCCACGGCCACCGTGCCCTGGTTCTGACGACCCTTTTTCGGGGCGGCGGCCTCCGCTCCTTAAAAATCAAGCACTTAGCGCAGGCCCCCGAAAGAGGGTCTCGCGCCAGGATCTGGCAGAATGTCCAAGCGCGACAAGCACTTGGGTGTCTGCCAGCTCTA # Right flank : CGATTGCATTAGCCACCACCCCGATTGAGTGGTAACAATCCAGCCCGACCTCGCAGCCCAAGACACGATGCAAGACCACCCGACGGCCC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGAACTGCCGGGTAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGGGTAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 30722-28531 **** Predicted by CRISPRDetect 2.4 *** >NZ_AZRA01000071.1 Sphaerotilus natans subsp. natans DSM 6575 X805_71, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 30721 28 89.3 32 A..C.A...................... AAGGTCGAGACCACGACGGGAACCGATGCCGC TC,C [30709,30714] 30658 28 96.4 32 A........................... AACCAGGCCCGCAGCACCAGCAGCGAGGACGG 30598 28 100.0 32 ............................ AGTGCCAGGCGCGCCGGGACACGGGACGGAAT 30538 28 100.0 32 ............................ TGAGCCCAGCCGCGCCAGGGCAGCGCCCGGCC 30478 28 100.0 32 ............................ AACCGTCATGACGAGCGAAGCCGCATCGAACT 30418 28 100.0 32 ............................ TCGAAGGCCGTGAACAGCAGGCCGCCAGCCGC 30358 28 100.0 32 ............................ TCACAGCTGCACGAGGCGGAACTCGTCATTGC 30298 28 100.0 32 ............................ TTGAAGCCCCAGGCCAGGTGCAGCTCCCACTT 30238 28 100.0 32 ............................ GGCCACCGTGGCCGGTCCTGCTCGGGCCTCAG 30178 28 100.0 32 ............................ AGCCCTCACCCTGAGCCCCCAGGGCACCAGCC 30118 28 100.0 32 ............................ ATGCGCAAAATCGAAGCCCGAATGATCGAAGC 30058 28 100.0 32 ............................ CTTGGCAATACCGTCGTGACCTGCCGGGTCCG 29998 28 96.4 32 .........T.................. TTACTTGGTGAGAACGTGACAGTAATCACCGG 29938 28 100.0 32 ............................ ACCTGAGCCCCCAGCGCCAGGGCAGCGCCCGG 29878 28 100.0 32 ............................ TTGGGAGACGCACGCGCCGGCCGACGACGAGC 29818 28 100.0 32 ............................ GCTGCCCCGCAGCCGCCCGCAGCGGTCATCGG 29758 28 100.0 32 ............................ ATTCGAGCTGTCCGGCCTCGTCAGTGCTGATG 29698 28 100.0 32 ............................ TCAGGCCGGGTCGACGGTCTGCAGCCATCACC 29638 28 100.0 32 ............................ GAGACGCTGCAGCCGATCGGCTCGCCGCTGCT 29578 28 100.0 32 ............................ ACACCTCGATCAGATCCATGCTCTGCGTCCCG 29518 28 100.0 32 ............................ AAGGTGGCCAAGCACCGGTTGGCGTTCGACCT 29458 28 100.0 32 ............................ ATGCGGCATAGACCAAGCGCGATTTAGGGCTG 29398 28 100.0 32 ............................ GTTGCCGCGCGTGATGCGGCCCCAGGTCACAT 29338 28 100.0 32 ............................ ATTCGGCGGTGATGCCGGTCAGGTCGAGGGCC 29278 28 100.0 32 ............................ AGGCGCCGGCCGGGATCAGCCAGTCGTCGACC 29218 28 100.0 32 ............................ GACCTGTGCAGTCGGGCCGACTTCTCGAGCGA 29158 28 100.0 32 ............................ AGCTCGGTCGCCGTCAGCTCGCCGTCCGCCAG 29098 28 100.0 32 ............................ TTTGTGCCCAGCGCGCCGGCATTGCTCATGAT 29038 28 100.0 32 ............................ TGCTGATCACCAAAGACGACATCGACTTTGCC 28978 28 100.0 32 ............................ TGGCCGGCGAGATGCCGCGGGGCCGTGTGACC 28918 28 100.0 32 ............................ TACACCTGGGACGACCCCAGCGACATCGAGAC 28858 28 100.0 32 ............................ ACCCACACGCTACGGCAACCTCCTCTTCCGTC 28798 28 100.0 32 ............................ TCTGCCGACCTGCCTCCCGCCGTCCTTGATGC 28738 28 100.0 32 ............................ ATCCCCTGGCAGATCAGCCGCGCGGTGCTGGC 28678 28 100.0 32 ............................ CGGCAGCTCGCCGAGCAGCCGATCCAGCTCGG 28618 28 100.0 32 ............................ GGGGGATGAAGGAGCGAAGCGGAGACATCCCC 28558 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 37 28 99.5 32 GTGAACTGCCGGGTAGGCAGCTCAGAAA # Left flank : CT # Right flank : GTGCGAAACCGCACCGCCTATTCGATCGCTGGAGCGACCTGGCGCCCCGATCAGAGATCGGCGTCCGCCGACTCCAGCATTCTCTGGCTCTGCTGGGCCAGGGGCTTGGTGGCCCAGGCCCAGGCCGAGGCCACGCCCTCGCGGCGGACGCAGGCCCGGACCTGGGCGCGCAGCTCGCGGCGCGGGCCGCGAATCCGCTCGACGGTGCAGCGGCCGGTGACCGCCTCGACGATGTGCATGTCGACTTTCATGGAGTCCTTGGAGTTGTGGCTGGCCCCGGATGGCGGGCCGGCTGGGTGGGTAGGCTTCGCATCATGCCAGCCCGGCGTCCGCCGCCTGACAGGCGGCCCACTCAGCCGCGCATCAGGAAGGCCACCGTCATCGCCAGACCGGTCAGCACCACGCCGGTGCGCACCCAGGCGGCCGGAAGCCGTCGCGCCAGCCGCGCGCCGATGAAGCCGCCCAGCGTGGCGGCCACCATCATCACCAGCGCCTGCGGC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGAACTGCCGGGTAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGGGTAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [35.0-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.24 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //