Array 1 460850-460586 **** Predicted by CRISPRDetect 2.4 *** >NZ_AUMZ01000001.1 Synechococcus sp. 60AY4M2 scaffold00001, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ====================================================== ================== 460849 32 100.0 43 ................................ AAACAACCAACATGTAAAAGCGTTCGGCGTAGTTATTATGGAT 460774 32 100.0 40 ................................ AAACATCCTTGTGTAGTTCGGGATCCCTAGAGCATTAGCA 460702 32 100.0 54 ................................ AGACGCCCAGGGAGTTTAAGAACTCCCGGGCTTGCTTTAGCCACGCGTCCTCAA 460616 31 87.5 0 ...........C..............T.G-.. | ========== ====== ====== ====== ================================ ====================================================== ================== 4 32 96.9 46 GTTCCCCCTTCGGGGGGATCCCTAGAAATTGG # Left flank : CCCAGTTGCCTGGGCAGCCCGCAAACCCTTGCGTGAATCCTCAGGCTAGCTATGTTTGCGAGGCAACACAAAAATGGTATCAACGCCTCTGCGAGCGCCTCGCCAAAACCCGCAAAGGCTGATTCTTTCGTTGACCCGCTCGATGCCTTGCGCCACAAGGCTTTCAGGCCTCTCACCCCCCCTCTTCGGGGCCCTTTTTTGCCACCTTCGACCGACCCCCTCGCAAATAGGCCTTGCATTCCTTGCCCTGCTTGGGTTTAATAGGGGTAGAGTTCCCCCTTCGGGGGGATCCCTAGAAATTGGAAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : TGTAGGTTGGCCAAGTAAGCGGCTCCCCCTTCCTTGGGGGGAAACTAGCAGCGGGGATCCCCAGGTGTTGAACATGCGCTTTGCGTTTTGCCGATACCGGCGGCCTTTCCGCCAGCCCTTGCGCACGCGCTACGGCCTGTGGTCTATCCGCGAAGGGATCCTGGTTCGGCTGACGGACGCGGAGACGGGAGGTCAGGGCTATGGGGAGATTGCCCCCATCCCCTGGTTGGGCAGCGAGACCGTAGAGGAAGCGCTGGCATTTTGTCAGCAGTTGCCCCCTGAGCTGTCGGAAGCAGAGATCGAGAAGATCCCGGCAACCTTGCCCGCCACGCGCTTTGGGCTGGAATGCGCCTGGCTGGCCTGTCGGGATCCCGGCTGGCTGGCAAGGGATCTCTCCGGGCTTTCCTGGTGTGGGCTTTTTGGGAAAACCCCACCCTCAGGTTCCTACCCCGCCTACAAGGTCAAGGTGGGGGTGGAGCCTCTCGAGCAGGAGGTGAAAA # Questionable array : NO Score: 5.41 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:-0.29, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCCCCTTCGGGGGGATCCCTAGAAATTGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.60,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [38.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,0.78 Confidence: LOW] # Array family : NA // Array 2 601239-601583 **** Predicted by CRISPRDetect 2.4 *** >NZ_AUMZ01000001.1 Synechococcus sp. 60AY4M2 scaffold00001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================== ================== 601239 37 97.3 46 A.................................... CAGTGGGCTTCACCCCAAATTCTTTGAGCTGCCGCCGCAACGCAGC 601322 37 100.0 39 ..................................... TCTCTCAACTCGTGTTCTACTGTCAGTAACTCAAGTAAT 601398 37 100.0 36 ..................................... ACCCAATCTGGGTGGGCCTCGATGAAGTGGTCAGAA 601471 37 100.0 39 ..................................... GACGCCATCCAAATGGACATGGCGTCGGATTTATCGGCA 601547 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ============================================== ================== 5 37 99.5 40 GTTGATCCCTACCTTTTCCCCGCAAGGGGACGGAAAC # Left flank : GGCCCCCGCTTTTTGGTAGTCCTCGTCGCTAAATCCCGCCCCCTGGCCTGCTTGGGTTTCCACCCACACCTGGTGCCCCTGCTCCGTCAGAGCCCGCACCGCCGCCGGCGTCAGGCCAACGCGAAACTCCTGCTCCTTGATCTCTTTGGGCACACCAATGCGCATAGGGATCCCCATAGGGCTGTCTTCCAGTCTAGACAGACCAGCGCTGGGATGGGATCCCTGGCCGACGGGGGGCGGCAGGAATTGTAAAGTTTTGTGCGCAATCTGTCGGGGCGAGCCGTTGTTAGCTTTCCCCTGGCAACACCAGGCTTTAAGAGGAATCTAGAACTGCTTGCCCAAATTGACCCAAAAACGTGACATAATGCCCTCAAAACAGCGAATTTCCCGACTTGCGCTTATCCGGCGAAGCAGTGTTAATATCTGTTTCGGGAAGTCTCCGTACTCCCTCGCAAACGCACCTTGAAAACCTTATGGATTCAGCCTTTTCCGGGGGTAGG # Right flank : CNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGCCATCCAAATGGACATGGCGTCGGATTTATCGGCAGTTGATCCCTACCTTTTCCCCGCAAGGGGACGGAAACTATAGGGATCCGGTGGATCCCTGGTTAGGTCGGGGGTTGCTCTGCCCAGAAGGGATCCCTAGCGCAGGAAGCGGGCCAACAGCAGCAGGCCGAGGCCGCCGAAGAGGATGTTGAAGCTCCAGGCTGCCGCCCAGGGGGGAAGGGCTCCTGCTTCGCCCAGGCTGCGAGACACACTCAGCACCACGTAGTAGGCAAACACCAACAGGATCCCGA # Questionable array : NO Score: 6.03 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGATCCCTACCTTTTCCCCGCAAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [8,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.20,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.41 Confidence: LOW] # Array family : NA // Array 3 869812-869443 **** Predicted by CRISPRDetect 2.4 *** >NZ_AUMZ01000001.1 Synechococcus sp. 60AY4M2 scaffold00001, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================================= ===================================================================== ================== 869811 39 100.0 33 ....................................... GCCCTGATGGCATTCAGCTACATCTTTCCTGGT 869739 39 100.0 38 ....................................... ATTAAGGAACGTATCGAGCGTGAGTCGGAGTTGGTAAA 869662 39 97.4 69 T...................................... AATTCAGTTACTAATTCCGACATAGAACTATCTATCGGAGACAGCGTTCTTACGCTAACTCCTCAACAC 869554 39 100.0 34 ....................................... TGACCTAGACGCCAAGTACACGAAGGAGCAGGTC 869481 39 97.4 0 .T..................................... | ========== ====== ====== ====== ======================================= ===================================================================== ================== 5 39 99.0 44 AAGTTTCCGTCCCCTTGCGGGGAAAAGGTAGGGATCAAC # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGACATC # Right flank : CCTACCCTCGGAAAAGCCTGAATTCATGAGGTTTTCAAGGTGCGTTCGCGAGGGAGTACGGAGATTCCTCGACACAGATATTAACATTGTCCTCGCGGCCAAGCGCAAGCGGGGAAATTGAGCTTGCTACGGCCATTATGTCACGTTTTTGGGCCAATCGGGGCAAAAGATCTAAAGTTTCCCTTAAAATCTTGTGCCGGCAGAGTCAGGCTGGTGATGGCTCGCCCCGACAGATCGCGCACAAAACTTTACAATTTCGGCCCGGTGGAGAGCCTCAGAAGATCAGGTAGTCCGGCGGCTCATAGGGGGGAGGCCCCCCGAAGACTTTGGCCTGCTTCTTGGCCGCGGCATCCAAAGGGTAGGCCCGCAGGCTATCTTCCTGGAGGTTGAGCAGAGGCAGCCACGACTTTTCCAGCTTCTCTTCCAGCTCGGCAGTGTCCAGGGGGCATTCAAAAACGGAGTATTGCACTCGCTGGCAGCACTGCTCCAGGCGTTTGGCC # Questionable array : NO Score: 5.31 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:-0.69, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AAGTTTCCGTCCCCTTGCGGGGAAAAGGTAGGGATCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [8,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-10.40,-9.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-5.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,0.78 Confidence: LOW] # Array family : NA // Array 4 1036300-1036830 **** Predicted by CRISPRDetect 2.4 *** >NZ_AUMZ01000001.1 Synechococcus sp. 60AY4M2 scaffold00001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 1036300 29 100.0 33 ............................. ACAAATACAGCCAGCTGGTGCGTCATTTGCCGA 1036362 29 96.6 34 ............................A GGCGTTGCGCCAAGGTTCACCTATTCCCCGGAGA 1036425 29 100.0 34 ............................. GCCACCCGTCGCACCGCGTCGGCCAGGTTGGGCA 1036488 29 100.0 34 ............................. GTGGTGCTGGTGCGCCCCGCCGGCTCCAGTTTGG 1036551 29 100.0 34 ............................. CCAGTAAGAGATTCACGATGGAAGTGAACAACCC 1036614 29 100.0 34 ............................. CCGCCGGACGCGCCAGATGAGCCGCCAGCAGAGC 1036677 29 100.0 34 ............................. CGCTCAATCTGCTCACAAATCTCCAGTGCTGAGA 1036740 29 96.6 34 ............................A ATCTATGAGCCCCCTGGTAGTTCTCCTGCTGTAC 1036803 28 82.8 0 ............T.T.....A..-.G... | ========== ====== ====== ====== ============================= ================================== ================== 9 29 97.3 34 GTTGTCCCCACACCCGTGGGGGTGAACCG # Left flank : CGGTTCGAGCGGATATTAGTTTCTTGAAGGATCGCTTTCAAGCCCCCATCAAAGTCAGCCGTGAAAAAGGGTATCACTACACTGATCGGGAATGGCGCTTGCCGACGATACCCCTCACTAAGGGGGAGCTGTTTGCCCTGACTTTGGGAGGGAGAATGCTGGAAGCCTACGCCGGATCGGCCTATGCCCCGCAGTTGCGCTCGGCAATTGGGCGGTTGGCGCAACGGCTTCCAGAGCAGGAGTGGCTGGATCTCCAGCAGCTAGCCGATGAGCGGCTCATCTTTCGGGCAGGGGCAGAAACCCATCTGGATTGGGAGATTTGGCAGCGGTTGGAGGATGCCTGTCGGGAGAAAAGACGAGTGTGGATGCGCTATCGCACCGCCAGCCGAGGCGATCAAGTGTCGGAACGGGAGTTGGATCCCTATCTCTTGCACATCTACCGCGGCACCAATCCCTACGTGATTGGCTGGTGCCACAAAAGACAAGAAGTGCGCTGGTTC # Right flank : GGCTAGACAATTAAGACAATCTCACATCTACCGGGATCCCTTGCCTAGGTGGGCGACACTGGGGCTAGGTCGCAGAAGCGCGATATCTAAGGAGGGGAGTATGAGCAGGAGCTTGCTGGAGCAGTTGCGAGAGATGACGGTGGTGGTGGCCGACACGGGGGATATCAACGCCATCGAGACCTTTAAGCCGCAGGATGCCACCACCAATCCCTCTTTGATTACAGCAGCCGCCCAAATGCCCCAGTACCAGGGCATTGTCGATGAGACCTTGCTCAAGGCCCGCCAAGACCTGGGATCCAAAGCCGACACCAAAGCCGTGGTGGCCCACGCCATCGACCAACTGGCGGTGGCCTTTGGCGTGCGCATTTTGTCCATCATCCCCGGTCGGGTTTCGACGGAGGTGGACGCCCGGCTCTCCTACGACACAGCAGCCACCGTGGCCAAGGCCCGCCATCTCATCGAGCTCTACAAGGCGGCAGGGGCGGATCCCAAGCGGGTGC # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTCCCCACACCCGTGGGGGTGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTGTCCCCACACGCGTGGGGGTGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 5 1206262-1206444 **** Predicted by CRISPRDetect 2.4 *** >NZ_AUMZ01000001.1 Synechococcus sp. 60AY4M2 scaffold00001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================== ================== 1206262 36 100.0 38 .................................... TCTGGTCGTACAGCCGCTGAATCGCACAGCACAGGCGG 1206336 36 100.0 37 .................................... CCTCCTGTTTCCCCCAGAACAACAAAATTGGGGGCAA 1206409 36 97.2 0 ...............................A.... | ========== ====== ====== ====== ==================================== ====================================== ================== 3 36 99.1 38 GTCGCTTCCCTTCGGGGAAGTGGAATTAATGGAAAC # Left flank : CTGCCACAACATCAGACCCCGCCGTTAATAGCACAGAAGTCATCGCCGCCGTTAGGGGAGCAATCAAGGCATTCATTTGAATCCCAATCCCCGGCACCACCTGGACAGAATAATAACTAACTATTGTCACCACAGCCGTGACAAGCACAATCAAAATTGGCGAAACACAGGTAAACTGATAAATGGCCAATAGGGTTGGAATCAGACCACCCCCGACATTCAACGCCACAATCGTTTTCTGTTCAATTCGCCTTAAGGGAATACCCCAAAAGAAGCGCATCGTCCACAATCGATCCAAATCAGGTACCATAGCTACTTTGGAAACTCTCTCATAAAGGGGGATATTAATCGTACTCTCAATAATTACTAGGGTCAGCAGCACAAGAGATAGGTTAGGAGAAAATTCGAGCTTTGCAACAGCAACTTGAACCGCATCTAGGGTAACCACCAACCAGAGAAACGGGAAGGCTAAGAGCAGGAGTAAAAAGAGTAGATAGGCA # Right flank : CAAACAAACTATGGCAGCCAGGGAAACTGGCGAAAGTTAGGTGGGCGCTTTTCCAAAAAGGCGCGTTTGCCCTCAGCAGCTTCTTCGGTCATGTAGAACAGCAACGTCGCATCTCCGGCCAGCTCCTGCAGCCCCACCTGCCCATCGCAGTCGGCATTGAAGGCGGCTTTGAGGCAGCGGATGGCCAAGGGGCTGTGCTGGAGAATCTCTTGCGCCCAGCGGATCCCTTCAGCTTCCAGCTCTTCCACCGGCACCACGGCATTGACCAGACCCATCTCCAGGGCTTGGGCTGCGGTGTATTGGCGGCAGAGGAACCAAATCTCGCGGGCTTTTTTTTGCCCCACCACTCGCGCCAGGTAGGCGGCCCCAAAGCCCCCATCGAAGCTGCCCACCCTAGGGCCGGTTTGCCCAAAGATGGCATTATCGGCGGCAATGGTCAGGTCGCAGATGAGATGCAAAACATGGCCACCCCCAATGGCGTAGCCTGCCACTAGGGCAAT # Questionable array : NO Score: 5.31 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTTCCCTTCGGGGAAGTGGAATTAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [9,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.50,-6.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 6 2406839-2408076 **** Predicted by CRISPRDetect 2.4 *** >NZ_AUMZ01000001.1 Synechococcus sp. 60AY4M2 scaffold00001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================= ================== 2406839 36 100.0 37 .................................... ATGTAGAGCTTTCTGCTACCATATAGGTAGAGATGTT 2406912 36 100.0 37 .................................... CAGTTCCCACAATGCATGTTGCATTTGGGGTGCTTTT 2406985 36 100.0 39 .................................... CTGAATTATGGTGTCACCCTCCTTCTTCTCCAGTACGAC 2407060 36 100.0 45 .................................... AGTTTTAGGTCTCTTAGGATACCTATCCATACCTCTTCTCTGCAT 2407141 36 100.0 38 .................................... TGCTACCAAGCTTGGCGGCTTGGTACTGCAATGCTGCT 2407215 36 100.0 44 .................................... TCCCAATCTAGGCAGTTGAATCACAGTTTTCTGCCTCTAAAAAT 2407295 36 100.0 39 .................................... ATCAACCAATGCCCGCGGTAGCGGCATACAGTCATGAAG 2407370 36 100.0 41 .................................... TGCCGAAATTGGCCTTAACCTTCACCCACGCTTCCCGGATT 2407447 36 100.0 39 .................................... GGCAGGATAGTTGTTCACTGCTGGATTAGGAGGTTGGGA 2407522 36 100.0 35 .................................... TACCCAGCGCTCCATGAATTGGAGAACCAGTGCAA 2407593 36 100.0 43 .................................... TAGCACGCGTACACAAGCCTGTCTAAGTAATTAACCTCATCAG 2407672 36 100.0 35 .................................... TGCTTTGTGTTATACTGATAATGCGGACACCAGAA 2407743 36 100.0 39 .................................... TTCTTCAGAAGTAATCGTGTAGTCGTCGTTCAACAAAAT 2407818 36 100.0 37 .................................... ATAGGTTTCTGTTAAAAGAGTCCTAAAGAGCTGAGCA 2407891 36 100.0 38 .................................... TATTTACCTAAGTTGCGATAGACGAAAATTAATCCGTC 2407965 36 97.2 40 ...T................................ GTTCAGCGTAGTCGGCATAAAAGGTCCAGTTACTGAAGAG 2408041 36 91.7 0 .................................CTA | ========== ====== ====== ====== ==================================== ============================================= ================== 17 36 99.3 39 GTTCCCCCTTCGGGGGGATCCCTAGAAATTGGAAAC # Left flank : AGGCGCATCTCCCCGTATTTGCGATATAGGTCTTTGGTGACTTTGTAGGAGCCGCCGTAGTGGCCCACATCCTCTCCCAGAACAAACACATTGGGATCCCTGGCCATCTCTTCGTCGAGGGCGGCACGCAAGGCATTGTAAAGGAAGGTCTCGGCCATAGAGGGCAACCGCTGCTCAAAAATGTTGCTAAGTTTCCATTAAACCATTTTGCCGGCAGGGATCCGCTGGCAGACAACCCGCTGGGCAGGGCACCTCGCCCCTAGGGATCCCAACCCCGGTCATGTTGCCAAAAGCACACCAAAACGGTATCAGCAGCTCTGCGAGCGCCTCGCCAAAACCCGCAAAGGCCGATTCTTTCGTTGACCCGCTCGATGCCTTGCGCCACAAGGCTTTCAGGCCTCTCACCCCCCCTCTTCGGGGCCCTTTTTTGCCGTTTTCGACCGACCCCCTCGCAAATAGGCCTTGCATTCCTTGCCCCGCTTGGGTTTAATAAGGGTAGA # Right flank : AGAAATAGAAAATGAGCTTGCTGCTGCCGAAGCTAGCCCTGACATTGGGAGATCCGGCGGGGATTGGGCCAGAGATTGTGCTCAAGGCGCTGGCGGATCCCCAGGTGCAGGCCTGCGCCCAGATAACGGTGGTGGGCGAGCGGCAGGTTTTGGAAGCTACCTACTGCCTTCTGCGCCAGCGAGGGGCAACCGACCTGGCCGACCCGGCAGGGATCCCGGTGCTGGAGGGCGGCAGCGGCTTCTACCTAGAGCCGTCGCGCGTGGGCCGGGGGGATGTTGCAAGCGGGGCGGCCAGCTTTGCCTACCTGAAAACAGCTATTGAAGAAGCGCTGCGGGGCCAGTTCCAGGGGATCGTGACCGCTCCCATTGCCAAATACCTCTGGCACCAGGCGGGCTACCCCTTCCCTGGCCAAACAGAAGTTCTGGCCCAGCTCAGCGGGAGCGAGCGCTACGGCATGCTGTTTGTGGCCCGTTCTCCCCACAGCGGCTGGCAGATCCGG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCCCCTTCGGGGGGATCCCTAGAAATTGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [8,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.00,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 7 2814657-2814914 **** Predicted by CRISPRDetect 2.4 *** >NZ_AUMZ01000001.1 Synechococcus sp. 60AY4M2 scaffold00001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 2814657 36 100.0 37 .................................... ACCGGCAGAGCCTCCTCCAGCTTACTCTTCAGATCGC 2814730 36 100.0 39 .................................... TTGTAGAAACGCCACGGGCCCAACAGCTTGATTCGCATA 2814805 36 100.0 38 .................................... AAAAGAAAACCTGCTACCCAGTGAGTAGCGGGTTAGTG 2814879 35 75.0 0 .C..T......-A...A...T.C...........GG | A [2814909] ========== ====== ====== ====== ==================================== ======================================= ================== 4 36 93.8 38 GTTCCCCCTTCGGGGGGATCCCTAGAAATTGGAAAC # Left flank : AAAACCTCTCGCTGCAGTCGCCGCGGCAATTGGAAGTGCTGCTTAGCCGCATCACCTCGGAAACCCAACGCTGGAACCTCACCATCCAAGAGCTGGAAGACCTCCGCATCAGCCTGGATCAGTCGGCCAACCGCCTCTCCTACAGCATCCTGGTCGGATCCCTGATTATCGGCGCCGCCATCATCTCGGCGCAAACCCAGCGCTTCCAGGTCTTCTGGCTGAGCGAGCTGCTTTTTGGCGCCGCCAGCCTCTTGGGACTGTGGCTCATCCTCAGCATCCTCCGCTCCGGTCGCCTGCGCAATTAGCCCCTAGCTCGGACTTGCCAGGGATCCCGATCCTAGCCATGTTGCCAAAAGCACATAAAAACGGTATCAACGCTTCTGCGAGCGCCTCGCCAAAACCCGCAAAAGCCGATTTTTTCGTTGACCCGCTCGATGCCTTGCGCCACAAGGCTTTCAGGCCTCTCACCCCNNNNNNNNNNNNNNNNACGCGAAGCCCAT # Right flank : GCGGCTAAGGAACTCCGAGTAGATCTCGGTATAGGCCTTGACCCACTCGGGATCGGGCTGGATGAGGCGTTCCACCTGCACCAGCCGATCGGCAGCCTGCTGCACCGAGCAGCACCAATAGGCCGAGGCGGCCAGGACAGCTGCCCCTACGGCGGCCTCGGGGTGCTTGACCACTGCTAAGGGGCGGGCAAGGAGGCTGGCGCGCAGGCGCAGCCACAGAGGGCTTTTGCAGCCGCCGCCGGTGGTCAACAGCGTTCCCTCTATGGGGATCCCGTGGGCGGCCAAGGTCTCCAGCCCCAGCCGCTCCACCATTGCCACCCCTTCCAAGAGAGCTGCATAGAAGCGAGGGGATCCCACTTCCGCCTGGGGCAAGAAGCCGGCAAATTCACTATCCAGGATGGGAAAACGCTCGCCGGGTCGGCAGAGGGGATAGCTGACCAAGCCCGTGGGCAGATGGGCTTCCGCCTGCCGATCCAGGGCAGCAAAGTTGCCGCCGGGGA # Questionable array : NO Score: 5.55 # Score Detail : 1:0, 2:3, 3:0, 4:0.69, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCCCCTTCGGGGGGATCCCTAGAAATTGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [8,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.00,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [26.7-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 8 2920292-2920556 **** Predicted by CRISPRDetect 2.4 *** >NZ_AUMZ01000001.1 Synechococcus sp. 60AY4M2 scaffold00001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =========================================== ================== 2920292 36 100.0 43 .................................... TTTCATGCTGGGCTTTGCCCAGTGATGTGTTGTTTCGGAGGTC 2920371 36 97.2 40 .........................A.......... CCAGACGTTTTACGTGGTGGAAGTCTCCACCCGAGGCGGG 2920447 36 100.0 38 .................................... AAGCTGAACGATGGCGTAGTGATGTCGGCTCCCAGCCC 2920521 36 97.2 0 .......................C............ | ========== ====== ====== ====== ==================================== =========================================== ================== 4 36 98.6 41 GTTTCCAATTTCTAGGGATCCCCACGAAGGGGGAAC # Left flank : GAGTGGGATAACCCCTTGATTACAGGCATCGGCTGGATCAGCGAACTCATTCGTTTGTGTGGAGCTGAAGACATCTTTTCCGAATTCAGTGCCTATCCCGATGCACGGCGCCGGATTATAGCTGAACCGGCAGAGGTCGTGCGGCGCGCTCCAGACATCATCCTGGTGTCCTGGTGTGGCAAGAGGTTCAAGCCTGAGCGGCTTCACAGCCGCCCTGGGTGGGAGACTATCCCGGCGGTCTGGAGCGGACACGTCTACGAGCTGCCGTCAGAGGTGATTCTGCAGCCCGGTCCGGCTGCCTTGACCGATGGGGTGCAGTTGCTGCTGCAGATCTTTGACCGCTGGGAGGCCCAATCCTCCGCCTAAGCTTTGATGCTGCTTTCGATATGGTTGTGGGCCTGGACGGCGTCATACTTGAGCCCGAAGTCTTCTAGCGCGTACAGCACTGCCCGATTGTGGCTGCTGCACAGGCGCGTGAAGTTTGGGAGCACCTGGCGGTT # Right flank : CTTTCCCATTATTACGAGAGTCATGATAGCAGACGAGCAGGAGTGTTTCCAATTTCTAGGGATCCCCCCGAAGGGGGAACCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 5.79 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCAATTTCTAGGGATCCCCACGAAGGGGGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.90,-5.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [36.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.64 Confidence: LOW] # Array family : NA //