Array 1 698578-696259 **** Predicted by CRISPRDetect 2.4 *** >NZ_FOEG01000001.1 Aquisalimonas asiatica strain CGMCC 1.6291, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================================================== ================== 698577 28 100.0 33 ............................ CCCAACATCAAGCGGCTGATTCGGCGGCTTGTC 698516 28 100.0 33 ............................ CTGCATGGCATGCAGGAGGTCGGCGGTTCGATC 698455 28 100.0 33 ............................ TGCGTTTTGTCTCTCTGACTTCTTCTAGTACGG 698394 28 100.0 33 ............................ CTGGACAAGCGCTGCCGCGTCGGTCGATATGCC 698333 28 100.0 33 ............................ CGAGAACGTGCGCCGGGAGAACGGCCGCGTGTT 698272 28 100.0 33 ............................ CCGAGAAGGAAAACCCGTCGTAGTCCTCGTAGT 698211 28 100.0 33 ............................ CTCATTCATGGCCCTGGGCCTCCTGTTTCTCAG 698150 28 100.0 33 ............................ CGTGCAGGTGACGATGACGCCCTGGCGGCCCGG 698089 28 100.0 33 ............................ CGTCGAGGTGATGAGTGAGGCGATGGAGCGGTA 698028 28 100.0 33 ............................ TCTCCAGGCGGAAGCGGATGAGCGCATCCCGTG 697967 28 100.0 33 ............................ CTCGAGGCCGCAGTGATCTCCGGGCGCTTCCAC 697906 28 100.0 33 ............................ CGAGGGCTTCGACGTCACCCGCTCCGGGGATAC 697845 28 100.0 33 ............................ CTCCACGGGCAGGCCCAGTGTCTCCCCAAGGGC 697784 28 100.0 33 ............................ CACGTAGTTCTTGTTCCGCAGCGCCTGATACTC 697723 28 100.0 33 ............................ CCATCGTGATTAGCACACTCTGCGCTTGCGCAC 697662 28 100.0 33 ............................ CTGGCTTTCAGCCCGGCGGAACTGTTGCTGGTC 697601 28 100.0 33 ............................ CGTATAGACCACCACCCAAGGCGATAAAGCACA 697540 28 100.0 33 ............................ GCAGCGAGGTGACGCAGCCCCAGCGGTCCAACT 697479 28 100.0 33 ............................ CGTATGCTCATGGAAGACATGCCCACGGTGTTA 697418 28 100.0 33 ............................ TCTGAGCGAGGCGACGGGTGCCGAGGTCAAGGG 697357 28 100.0 33 ............................ TTGGCGGCAGTTTCGAGCACTGCCATAACTAAG 697296 28 100.0 33 ............................ CGCTTCCGCCCATCGGTCCCGAATGGCCGCCAG 697235 28 100.0 33 ............................ CTGACCGGACAGATCCTGGCATCTCACGATGCC 697174 28 100.0 33 ............................ CGACCAAGTCGAACGCTACCAGCGCGGGTTTGA 697113 28 100.0 33 ............................ CGAGCACGCCGTCCGAAAGGGGCAGGACGTGAA 697052 28 100.0 33 ............................ GTGCTTCGAGATCAGGTAGCCGTGGGTGCGGAT 696991 28 100.0 33 ............................ CACGGCGATCCGCCGACGCGCCGGCTGGTTGTG 696930 28 100.0 33 ............................ CTTGACCAGGAGGACGCATGACGAAGGTGCATG 696869 28 100.0 33 ............................ CGTGCCAGCTCCACGAGTGGGACGTGGTCGAGT 696808 28 96.4 33 ...................T........ CCGGCGCGTGACGGTAGAGAACCGTCTATGGGC 696747 28 100.0 33 ............................ CCGCGACCAGGCGACCCGCGACGGGGATTCACC 696686 28 100.0 34 ............................ TGCCTTCGCCCCGTGGCTTGCGTCATCGTGCCGG 696624 28 92.9 33 .CA......................... CACCAGCACCCTGCCCCGGCACCGCAATCGCCA 696563 28 100.0 33 ............................ CATCGTCCAGCCCCGGGCGCACGACCCGGACGG 696502 28 96.4 33 .....................T...... TAATGAAGTGTTCAACCGGACGAAAGGGGAAAA 696441 28 96.4 33 .............A.............. CAAGTACGTGCGCAGCCAGTATGCGCAAAACCA 696380 28 85.7 66 .............A.........G..AG ATTCAAGGCCATAACTGAGGGGCTGTGGTGGATGAAGGAGTCCCCGTTTCGACCGGACACCTTGTT 696286 28 67.9 0 C....A..T.A.G..ATA..C....... | ========== ====== ====== ====== ============================ ================================================================== ================== 38 28 98.3 34 GGTTGCCCCGCATGCGCGGGGATAGACC # Left flank : CGATATCACGATTCCACTCGCGTTCGCTGTAGCCCGGCAGGTTCAGGAGAATCCCTCGCTCAGCTTGGAGAGGACACTGCGCAAGGAGGCTGCGACGACGTTCCGAAAGAAGCGGCTGATCCCCGAGATGATCGATCGCGTAAAGGAGTTACTCCATGCCGATGACAATGGTAGTGACTCGTAATGTGAGTACTCGGATGCGTGGTTTCCTCGCATCGTCCATGCTGGAGCTCACCGCCGGTGTTTACAGCGCGCCCCGTTTGTCGGCGTCCGTGCGTGACCGGATCTGGGAGGTTCTGGAGAAATGGTGGGATTACGAATCGGATGCCTCCGTCATCATGGTTTGGGCTGATCAGAAGATGCCTGGTGGACAATCCGTGTTGACGCTGGGGATACCGCCAGTGGAACTGCTAGAAATGGATGGCTTAGTGGTGGCGAGGCGAGGTTCGTTGTAGTGACTTTCTTTAAAAATTCGCTGAATTAGCAAGTTACATTAAAGA # Right flank : TAGTGCAAAGGAGTGACCAAGGTGGAACGCATCGAAGTGGTAACGGGGGTTCAACGGCGGCGTCGGTATTCACCCCGGAAGAAGGCCGATCTGGTGGCGCTGTGCGAGCAGCCCGGCATGTCGGTGTCGCTTGTGGCGCGGCGCCATGGTATATCCCCAAGTCTCCTGTTCCGGTGGAAGAAGCTGATGAACGACGTTGGCATGACGGCAGTGGGCTCGGGCGACGAGGTGGTCAGTGCCGCCGAGGTGAAGGCGTTGAAGCGCCAGGTGCGTGAGCTCGAGCGGGTGCTGGGGCGCAAGACCATGGAGACCGAGATTCTCAAGGAAGCGCTGGAGGTGGCTCAGGCAAAAAAGTTGATCTCGCGCATGCCCTTGTTGCCACCGGACGATTCCCGGTGAAGCGCATCAGCGAGGTGCTGGGTGTGGCGCGCTCGAACCTGATGGAGCGCAAGGCGGGTCGTCACTGTGGTCGTCCCTCGCGTTATCGGGTTGCCGACGAT # Questionable array : NO Score: 3.12 # Score Detail : 1:0, 2:0, 3:0, 4:0.91, 5:0, 6:0.25, 7:-0.04, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTTGCCCCGCATGCGCGGGGATAGACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [18-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA // Array 1 649-381 **** Predicted by CRISPRDetect 2.4 *** >NZ_FOEG01000004.1 Aquisalimonas asiatica strain CGMCC 1.6291, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 648 28 100.0 32 ............................ TACCTGCAGCGCTACACCCTGCTGGCTGCCAC 588 28 100.0 32 ............................ CGACTCGGCATGACCCGTCGTTCCTCGGACCG 528 28 100.0 32 ............................ GCGACGTTCTGGAACCGCAAGCGCATCTACGT 468 28 100.0 32 ............................ ACGACAGCCACGCATTTGCCTTGCGGCCCGGC 408 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 5 28 100.0 32 GTTCGCTGCCGCGTAGGCAGCTCAGAAA # Left flank : CGTTGAGCCAATTGATGGAGAAAGGCTGGTTGAGCGGCATGTACGATCACGTCGCGGTAACGGGGATCGAATCGGTCCCTGATCAGGACGTTCGCTACAGACTCGTACGCCGACGGCAGCCCAAGACCAATGCCGAGCGACTGCGCCGTCGGCGCGCCAAGCGTCACGGAGAATCGCTTGAGCAGGCACGGGCCCATATTCCGGATTCCGTCGAACGAGCAACCGACCTGCCATTCGTTACGGTACGAAGTCTGAGTACGGGCGAGCGATTCAGCCTATTCATCGAGCACGGCGAACTTTGGAACAGCCCGCAGCCAGGCGCTTTCAACCGCTATGGTCTGAGCCAGGACGCAACGATCCCCTGGTTTTGACCCTTTTTTTGGGCGCCAAGAAAACAAACCGAAAATCAGAAACATGGAGCGCCACCCCAAGGTTGGGTTGGCGCTCCGCTTCTTAACCATGCTCTTTAACAATCAGGGCCTTAGTTGAGGTACGCTCTA # Right flank : ATGGACGTCGCACGACCGCCAGCGCTCTGAGGTGGACCCAATCAGTTGGACAACCTGATGGTGTCCCTAAGCTATGATCCGGTTGTTTCCCTGGCTCAGGCTGCCAAGGATATGGATTGCCCGTAGTACACCTCATCGGGCGTTTGGTAATCAAGGGTTTGGTGGTACCGGGTCTGATTGTAATGCCGGAAGTACCGGTGGAGCGCCTGCTTCAAGTGTCGGCCATCCTCGAAGGCAGTGAGGTAGACGCACTCGTGTTTGACGCTGCGCCAGAGCCGTTCCACGAAGATGTTGTCATGGTAGCAGCCCTTGCCGTCCATACTGATCCGGATGCCATACTCTTTGAGAACGCTTGTGAAGGCCTCGCTGGTGAACTGGACA # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCGCTGCCGCGTAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCGCTGCCGCGTAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [38.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 197251-194640 **** Predicted by CRISPRDetect 2.4 *** >NZ_FOEG01000006.1 Aquisalimonas asiatica strain CGMCC 1.6291, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 197250 28 100.0 32 ............................ CCTAGCATCCGGCGGCCCGGTCCAGATATCCC 197190 28 100.0 32 ............................ TGACTCATACCAACTCTCCGCAGTATTCTTCG 197130 28 100.0 32 ............................ TGGACCGTCCCTGAGAGTCACAACGCCACCCC 197070 28 100.0 32 ............................ TACTCCGAGCTCACCCGGCAACTGCTGAAGCT 197010 28 100.0 32 ............................ AAACTACGCATTGGCGCACGGCAATGGCTCGC 196950 28 100.0 32 ............................ CTCGCTATCATGCGCTTCGCTGCGGCTTTGGC 196890 28 100.0 32 ............................ TTGTCATGCCCCTGCCGGAGGGCTGGCAGGCG 196830 28 100.0 32 ............................ CCCTGCGGCAGCGCGCATCGCTCAAGCCGTAA 196770 28 100.0 32 ............................ TCATCGAGCGCGTACGCTGCGTGGAACTGTGA 196710 28 100.0 33 ............................ CGTCCCCGGGCTGGTGAGCAGATGTTCCTGCCG 196649 28 100.0 32 ............................ TATGACACCGCCTCGAACTGGAAGGACTTCTG 196589 28 100.0 32 ............................ CAGAACCACCATTAGGACTGCGTATAAGATAG 196529 28 100.0 32 ............................ AAGACCTTCATCTACGCCTTCCTGTACGGCGC 196469 28 100.0 32 ............................ ATCGTAGGGCTCCATGTAGTGACCCAGACAGC 196409 28 100.0 32 ............................ ATCCGGGAGTCCAACCGCTCCGACACCCACGG 196349 28 100.0 32 ............................ AGCTGCCGCAGACGCCGGTCTAGATCCTTCAT 196289 28 100.0 32 ............................ TCGGCACTGTCGGGCCGGAACAGCACCATGTC 196229 28 100.0 32 ............................ GACAGATGCTCGCAGAGATCGGCCAGCAGGAA 196169 28 100.0 32 ............................ TCGAATTGACAGGCACAACCGGGACATGGGAG 196109 28 100.0 32 ............................ TAATGGCTGCCCCGCCGCCGCGTAACGGGAAT 196049 28 100.0 32 ............................ TGGCGGAACGTCTTGCTGTCCTGCCCCTTCAG 195989 28 100.0 32 ............................ ACAGCCCGCTCCATGTCCTGGCGGGTGTCCAT 195929 28 100.0 32 ............................ ACTGCCGGTAGCGGAGCACGTGTCAACGGGGA 195869 28 100.0 32 ............................ TGGCGAGGGCAGCCAGTCAGTTTCGGACCACG 195809 28 100.0 32 ............................ TGTCCGATGACGACCTCCACTACCAGCTCCCG 195749 28 100.0 32 ............................ TATGTCCAAGCAGATCACCGCCCCGATGACCA 195689 28 100.0 32 ............................ TCGCGGATTGCGCGTCGGTACTCGGCGCGGCG 195629 28 100.0 32 ............................ TCGGCGTCACCGTACTCCCAGCGCCGGATTGT 195569 28 100.0 32 ............................ CCATGGGGAGCGCCCGAGGTGCAGTGTCGCGC 195509 28 100.0 32 ............................ TGCTGCACAAGACATTCCCGGGCGGTCACATC 195449 28 100.0 32 ............................ ACCTCGTCCTTCATGACCGCCGTGGTCCGACT 195389 28 100.0 33 ............................ TGTGTGAGGATCTACTGGTTATAACTACTGGTT 195328 28 100.0 32 ............................ TCACCGATCAAGCCTTCAGTGGTGACGCGATC 195268 28 100.0 32 ............................ AGAGCTCGTCTAGGGCGACCACGGCACCGTTC 195208 28 100.0 32 ............................ AGCCCGTAGAGCACCTCGCTGACGGCGCCAGG 195148 28 100.0 32 ............................ TGACACGTTCGAGACCCGGGCACTCGCTTGGA 195088 28 96.4 32 .............C.............. AGAACGCACGGCGTCCCCGCTCGTTTTCCTGG 195028 28 100.0 32 ............................ CACGGCTTCAACGTCATCGACGGCGGGAAGAA 194968 28 100.0 32 ............................ CATTCGCGCTGCAGGTTTTCGAGCATTCGATC 194908 28 100.0 32 ............................ TCGCGGATGCCGCCCCAGTGGGCGACGCGGTT 194848 28 100.0 32 ............................ GCCACAGCTGGCCCTCGGGCAGGTCCCCGATG 194788 28 100.0 32 ............................ ACGCGCCTATGGCCACTCGACACGTTTCTTGC 194728 28 100.0 32 ............................ ATCCGGTCCTGCATGCAGGCCTCAAGATCGAC 194668 28 89.3 0 .....................C.TA... | T [194648] ========== ====== ====== ====== ============================ ================================= ================== 44 28 99.7 32 GTTCGCTGCCGCGTAGGCAGCTCAGAAA # Left flank : CTTACTGATCGAGCTTGCGCGACAAAAAATCGCGCTCCACCGTCAGTCGACCGATCTCGCGGTAAAGCTCGTCTGTGCTGGGCTCATCGGATTGCTTGCCGGCCTTCCTCTTGCCTTCGAAGAGGTCTGGAGCGTTCTCCAGCAGCTCGCGCTTCCAGGTACTGACCATGGTGGGGTGAATCTGGAATCGGGCGGCGATCTCGGATGTGGTCTGGTCACCCTTGAGGGCGGCCAGAGCGACTTTGGACTTGAACGATGGGCTGTATTGCTTGCGTTTCTTGCTCATGATTCTCCTCCTTGTGGAGATGATGAATCAGAGCTTAGGCACCTGTCCAAAATTTGGGGGCCACTTCACTCGTCGC # Right flank : TAATGCGACTGCGCCGACGAACATTGGCGCCTGCTATGGCCGCCAGCATCCGGAAACCGCGTCTATACTCCAATAACGCGGGACGGCATCAGGGAGCATCACACAATGAAACGGTGGAGCCTGATTCACGGCATTGCGCCATTGCTGCTTCTGGCTTTCGTCGGGGCACCCGGGGTGGCGGCCGCCAATGACTACCCCACCGCCGCCCGTGTGGACTATGTGCTCGGTTGCATGGCGGCCAATGGGCAGAATCAGCTCGTCATGCAGAAGTGCGCCTGCAGCATCGACGTGATTGCGGAGCTGATGCCCTACGAAGACTACGAGGAAGCGGAGACGATACTCAGCATGCGCGAGCGCCGGGGCGAGCTGGGTGTGCTGTTCCGCACCGAGCGCGGCATGGAAGACCGGATGCAGGAGTTCCGGCGGGCGCAGGCGGAAGCGGATCTGCGATGCTTCTAGGCGCCACGCGCTCCATCGGGTGGGTGCTTGTGCTGCTGGCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCGCTGCCGCGTAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCGCTGCCGCGTAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [36.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //