Array 1 1601997-1595965 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP025199.1 Bifidobacterium pseudocatenulatum strain 12 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ====================================== ================== 1601996 33 100.0 35 ................................. TGGAATGGTGACTGGGTAGTAATGGTCGAAGGTGA 1601928 33 100.0 37 ................................. CGTACGAAGAGTTTCGGCATGGTGCGCAAGTCACGGA 1601858 33 100.0 34 ................................. GGTGTGGGTTGGACGAAACCGCCGACACTCTTAC 1601791 33 100.0 36 ................................. TGATAGGTACGAGGATATTATTAACATTAAAAACTT 1601722 33 100.0 33 ................................. GCCGTCGTTTTGTAGAAAATCCGGGTTTTTGCC 1601656 33 100.0 37 ................................. ATCAAATTTTGGGCGGTGAGTTTGTTGGTTTCGGACG 1601586 33 100.0 38 ................................. GTCGATGAATGGGGGGGGCTTGAAGCAGAAGGCGACGG 1601515 33 100.0 33 ................................. AACGCCTGATCGGCTTGTACATCCAGCATGCGG 1601449 33 100.0 35 ................................. CAACGATCTGTGGATACACTCCGCCATCACTGTAC 1601381 33 100.0 34 ................................. ACTTTGCGTGTGATGAAATATGGTCAGCCATCGG 1601314 33 100.0 32 ................................. TGCGCTGCGGTCTCGACGAAACCGCCGAAATC 1601249 33 100.0 36 ................................. AAGAATGGATGAACTCGGTTAACGGTAAGATTATTG 1601180 33 100.0 34 ................................. CCCAACATCACCCCCTTTTTGGCGGATAAGATCA 1601113 33 100.0 33 ................................. CATGGAGCGTTACGAGTGAGCAGATTATGCAAA 1601047 33 100.0 34 ................................. ATACCCGCGCCATTCCAAAATGCCACATCACCAT 1600980 33 100.0 34 ................................. TTAGTCATCAAATCATTAAAATCACTAAACGTAG 1600913 33 100.0 37 ................................. CCGGATAGGCTACGCGATTGTGATATATTGGGTCATG 1600843 33 100.0 34 ................................. TACATCCGAGCCCAAGACGGTGAAATGCATCGAG 1600776 33 100.0 33 ................................. GGTTACAACCTGATGAAGGCCCACCGGTACGAC 1600710 33 100.0 35 ................................. AGGCGTCAGCGTTGGGTCAGCTTAATTCGTTTGTT 1600642 33 100.0 35 ................................. GTCGCGCCGGTTGCCGAAGGCGCGCGCCCAACCGG 1600574 33 100.0 35 ................................. AGCGTGGAGTGGGAGCGCGCGCGGGACGACGCGAC 1600506 33 100.0 36 ................................. GCCGGCCACGTCGGCCACGAGCCGTTGCCACGGCAG 1600437 33 100.0 34 ................................. GTGGACAAACTGTTCAGCGCGGAACTCGCACCAA 1600370 33 100.0 34 ................................. TGCACGCTCTCCCGTGACGCTGGCGTGCCGGATA 1600303 33 100.0 33 ................................. ATGTGCCATTGTAGATCACTCAGTTACGTTTAA 1600237 33 100.0 34 ................................. TCGGCAAGACCAGCGAACGCGAACGCCGCATCGA 1600170 33 100.0 36 ................................. ATGTCCCTGTTTTTGTTGATGCGGTTGAGTTTCCCG 1600101 33 100.0 35 ................................. CAAAACATGTTGGAAACCCATACACCGCGTGCATA 1600033 33 100.0 34 ................................. TAATGGTGAGGGGGCGGGGCGTTCCCGCCCCCGA 1599966 33 100.0 33 ................................. TGGTAGTCTTTCGGCGTGTATGGGATTGCGATG 1599900 33 100.0 34 ................................. CTGACACGCGCGGCGCGTATCACCATGGCTTGCG 1599833 33 100.0 35 ................................. GAAAAGCACCCCCGCGGCACCATTAAGGCAGACGG 1599765 33 100.0 32 ................................. ACCTTCGGGGTTGAGATTGAGATCGAGTCTGA 1599700 33 100.0 32 ................................. AGGCGTGGGTTGACAGCGGATACGACAATCGC 1599635 33 100.0 32 ................................. AGGCGTGGGTTGACAGCGGATACGACAATCGC 1599570 33 100.0 35 ................................. GTGCGGATGGTGTCGAATATGCCGTCGGTGGCGGA 1599502 33 100.0 36 ................................. CACAATGACGAGCCACGTATCACCCCCCGTGACGTG 1599433 33 100.0 36 ................................. GCTCGGACATGGTAATAGTAAAGCCCCTAGGTAATA 1599364 33 100.0 35 ................................. CTTTTTGTGTTTGGGGGTATTGTTTTGTGCGAATA 1599296 33 100.0 34 ................................. CACGTCGGTGCGACGAAGATAAATGAACTCGTGT 1599229 33 100.0 35 ................................. GGTGATTTTACAGCGAAACGGGCCATCGAGTGGCG 1599161 33 100.0 35 ................................. TCCAACACCACCGGCTCGGTTGTCGCACTGCACGA 1599093 33 100.0 36 ................................. GCCAACCGTTTCGTGTGGGGCGCTATCCCACTGTCC 1599024 33 100.0 35 ................................. AGGATTGCATAACCCCTACCGGCTATGCGGGAGGC 1598956 33 100.0 34 ................................. TTAGAGCAGTACGACGGCGACTATGCCGACTATG 1598889 33 100.0 35 ................................. GATCTGTGCATCCGTGATGGGCGTGCGTTGGGCAA 1598821 33 100.0 34 ................................. ACCCCGTCCGACGTGGAGGCGGATGATTGGACGG 1598754 33 100.0 35 ................................. ATAGGTAATACCGATCGGCTGGAAGCTTGCCTTGG 1598686 33 100.0 33 ................................. ATACTCTCATACGAATCTCGCCAAAACCGCCGA 1598620 33 100.0 35 ................................. TGCGGAGCGGATCGCCATCTTGGTGCGAGTCTCGA 1598552 33 100.0 35 ................................. TCCGAAAATCGGTGGAGGGGACGCGTCACATGAGT 1598484 33 100.0 34 ................................. GTACGCGTTCTGGTGTCAGAACGGGTCAGAATCG 1598417 33 100.0 34 ................................. AAACCGCTCATCGCCGACAGTGGAACGATTATAA 1598350 33 100.0 35 ................................. CATGATTCGTTAGTCAATACGGTGCATTTGCCCGT 1598282 33 100.0 33 ................................. GTCAATAAACGAGCGGAAAAACCCCTTGCTTTG 1598216 33 100.0 32 ................................. TTTAAGATTCGTGGGGGAGACGTTCAGGAGCC 1598151 33 100.0 34 ................................. GAGTTCACCATCAACGCCTATCCGACCGCCTCCC 1598084 33 100.0 35 ................................. AGGCGTGCAGATGGTTAAGGGTGAGGATGGCTTAT 1598016 33 100.0 32 ................................. GTCAACATGATTGGGGTCTAGTGTGTAGACGG 1597951 33 100.0 34 ................................. CAACGTGGTATCAATGGTACGCATGGATCCGTTA 1597884 33 100.0 34 ................................. CCATACCCGTATGGGTCAACGCCCACGCCCGTCG 1597817 33 100.0 35 ................................. AGATTATGCCCGTCCACTACGCCCATAAGTGGCTT 1597749 33 100.0 32 ................................. GGCGTGCCGAAGATACCGAACATGGTGTTCAA 1597684 33 100.0 35 ................................. CTTGCCCAACTGTTTCAGTTCGCCTACGGAAACGT 1597616 33 100.0 33 ................................. TCCACGCCTGAGATCGAGGGTACTGCCGCGACG 1597550 33 100.0 37 ................................. ACGCCACCGAAACGGTGTCCGAGTACGGACCTGTGGT 1597480 33 100.0 36 ................................. GCGGAATACGCGCGCAAGGGCGGTTTTTATCGAGTG 1597411 33 100.0 33 ................................. GTTATAGGGGTGCGTTGGGCAAACATAATGTCT 1597345 33 100.0 33 ................................. GTTTATGAAAGTGACACCGTCTCAATCCGTACT 1597279 33 100.0 35 ................................. GACATAGGCGTTACCCAGCCGAATATCATGTTGAA 1597211 33 100.0 35 ................................. AAAAGGCGAACCCCTATTTTGCAAAATACCGACTT 1597143 33 100.0 36 ................................. TGCTGGGATGAAATGCTCGAAACTACCAACTCTCCT 1597074 33 100.0 34 ................................. ACGGCCCCGACCGGAGTGGCCTGGACCCCGCCGG 1597007 33 100.0 35 ................................. CCGAAGATTCGTTCGTGCTGGTCGAGTCCATCTCC 1596939 33 100.0 33 ................................. TTCGCCGGTGGTCGAGCCAATCAGACCCTGATC 1596873 33 100.0 33 ................................. TAACACACTGTACCTTAATCACTGGGGCATCTA 1596807 33 100.0 33 ................................. GCTTTGACCATTGCCCACAGGATTTCGCTTGCC 1596741 33 100.0 35 ................................. TTGTTATTGGATTAGTGTATCGATGTTGTTAAGCG 1596673 33 100.0 37 ................................. CACGATAGCTTCGTCGCCATCGACGGAGAAATCGAGG 1596603 33 97.0 33 ....T............................ GCCACGCAAGACACGAAAACAAACCAACGCAAA 1596537 33 100.0 33 ................................. AAATCAAGCGAACCGGCATAACCGTCGATATGG 1596471 33 100.0 34 ................................. AACCTAGCGAACGGCCTGATCGGTGTTATGGTAA 1596404 33 100.0 34 ................................. CAGAGGTGGGCGAGGTAAACGCTTTTGGGTCCAG 1596337 33 100.0 34 ................................. GTGCTGGCCTTGGCCGTCACGTCGAGGCTTTCGT 1596270 33 100.0 36 ................................. CTCGGACGTGACGCGGAAAGCCCCGGACACGGGTCG 1596201 33 100.0 36 ................................. TGCCCGTCGCCCTGCCAGCATGCCTTCGAATCGTCG 1596132 33 100.0 37 ................................. GGCTTGGAAGTCGAGATGGAATCCGAGCTTGACACCG 1596062 33 100.0 32 ................................. TTGAGCATGCGGAGCATGACGTTGGCGGTCGT 1595997 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ====================================== ================== 90 33 100.0 34 GTCGCTCTCCTCATGGAGAGCGTGGATTGAAAT # Left flank : CAATACCGATGAGGACAGCCTGCGCTTTTATAAACTTGGCGCTCGATATGCGGATAGGATTGAGCATTATGGACGTGAACGGAGTTTGCCGGTTAATGATGTGATGATGATATAGCACAGGCAAAATGGCATGGTGCCATAACGATATGGTGTGGGGTATGCTGGGTTGAGCGTTTGAGTGTGCCGTCCGGTATTCAGAGTGTGTTTTCTAGCCAGCAGTATTGTGTTTTCGGCAAGGTGGCCGGTCTTGGAATGGTGTTTGTGCGAAGTGTAAGCGCTCATGATAAGGGACGTCTTTCGCACCTGAAAAACTATCGAAATCCGAATTGTGATTTTCGTGGGGCGTTTTGAAAACTAAATAATGGACATTAAAATGAGACAGAAAGCCAGTTGCTCGTTTTAGACATGTTGTTCGTCGTATCGGCGGTGTTGTTTGATATGCTTAAAGCTAGGCAGCTGGCTTGCGTCTCAAAAAGCGGACAAAAATGTCCAGCTGCACT # Right flank : CGGTGTCTGCATCGTTCTGGCCGCCGCGTGGATGTTGCTCTCCCTGTTTATGTCCAGTGTTCCCCGCACATGCGGGATTCCACATGTGCGGGACTGCTAGCAACGGAAAACCAGGGTTTTTGTCCGCTCGGGGCGACTTCAACGGTAATACGAGCAGGAACTGCGACTGGGTGTTTCGCATGGGGTCGCTTCTGAAAGCTATGTAAAAGAAATAGTGTATGTGAAAACGGTCGGGTGGGTGCGGATGCACGAGAAATTGGCTAACCTGTCGAATTTCTGTTTTACTTTGGTCGTTCATCTCGTGAGTGGTCGTCAAGCTAGACATATTGTGTCCCATGGGATGCAACATGTCATATGGAAATACATATGACTGGCGAATATCGCCAATGGTTCAGCCGGATAAAGGACCGGAACGCAAAAGCCCGAATCAGCGCGAGACTCCGATTGCGCTTCTAGATGGGGCGGCCGGTGGGTGACCTGCATACGGTTGGTGACGGGGC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCTCCTCATGGAGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCTCCTCACGGAGAGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.30,-7.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //