Array 1 2728516-2732503 **** Predicted by CRISPRDetect 2.4 *** >NZ_KI912105.1 Alkaliflexus imshenetskii DSM 15055 strain Z-7010, DSM 15055 AlkimDRAFT_AIB.5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================================== =============================== ================== 2728516 46 100.0 30 .............................................. ACATTTGTGTTATCACAAAAAGTACAAGCA 2728592 46 100.0 29 .............................................. ATAAGCGGTCAAAGAGGCGTTTTAGGAAT 2728667 46 100.0 29 .............................................. TCTGCTGAATCAATTGCACGTATGTAATC 2728742 46 100.0 29 .............................................. TTCTTGGTCGAGCTCTTCGACTATTATGT 2728817 46 100.0 30 .............................................. CAGAATGGGGTGCTGAATCTGATAAGCTGT 2728893 46 100.0 30 .............................................. TGACCCCGGTTGTGGTGTCTGTCGTGATGG 2728969 46 100.0 30 .............................................. ATGGCTGGACATGCTATATCTGTCGGCAAT 2729045 46 100.0 29 .............................................. AAACTTTTCAGTTTGTATCCCTTTTTTGT 2729120 46 100.0 29 .............................................. GTACCAACTGCAAGATTATCAGGTAATTA 2729195 46 100.0 30 .............................................. AGGGTTCTTTGTCTATTCACCAAAAATGAA 2729271 46 100.0 30 .............................................. ACAGTGCAGGCAGAGGCTCAGGTACAAGCG 2729347 46 100.0 30 .............................................. AGGAAATTTATGACCCCGAAACAGACCCGA 2729423 46 100.0 29 .............................................. AGAAGCACATCATTTCTCGGATTAGTCAG 2729498 46 100.0 30 .............................................. TTCCGCGTAAGATGCCTGATGGTTCCCGCG 2729574 46 100.0 30 .............................................. ACAGGGGCTCCTACTATTACAGGTGTAAAT 2729650 46 100.0 31 .............................................. TTCCTTGCGTGTTGTTGGTTGCCGTGATTAT 2729727 46 100.0 30 .............................................. ACTGCTCAATATGTAAGGCGCTATCAGATT 2729803 46 100.0 30 .............................................. GCATGAACACACCGGAACGCCTTTTTCAAT 2729879 46 100.0 30 .............................................. AATTCTTTGCTCACTGAAAGCTCCTGTCGT 2729955 46 100.0 30 .............................................. TCAACAAACAGGTCGGCAGAAGTAGCGGCC 2730031 46 100.0 30 .............................................. ACCTCGCCGTCTGGATGGTAAGTGGTAACA 2730107 46 100.0 30 .............................................. AATGTCGCTGCTGCCAATGAAAGAAGTGAT 2730183 46 100.0 30 .............................................. TCAATGTAATGTGGGGGTATTTGCTTGGAC 2730259 46 100.0 30 .............................................. TTGATGACTTACATCTCCCGGAAGCTGAAA 2730335 46 100.0 29 .............................................. ATGTTCTTCTTCGTATTTGCGAATAACAA 2730410 46 100.0 30 .............................................. CGTTCATTAAAAATGGAGGCGAAGGCAAAG 2730486 46 100.0 30 .............................................. TGAAGATTACTCAGGATGAGTTTGAACACT 2730562 46 100.0 30 .............................................. AGATGTGTTTGAAGCTCAGGAAAGGGCTTC 2730638 46 100.0 30 .............................................. TATAGGATATACTACATCAAATAGGGTTAA 2730714 46 100.0 30 .............................................. TGCTCTATTGCCTTTAATGTCGATACCAAT 2730790 46 100.0 29 .............................................. AAGAAGCCCTGAAATATAACCACCCCCGC 2730865 46 100.0 30 .............................................. AAAGAGGCACCTAATAATTTTAATGCCTTA 2730941 46 100.0 30 .............................................. ATGGTCCAAGTTTATTGAACCCAGCCGTAG 2731017 46 100.0 31 .............................................. CCGGAAAAGCATTACATGGATGGCGGATGGA 2731094 46 100.0 30 .............................................. TTGGTAACGGAGGCGGAACTAACGATATGG 2731170 46 100.0 30 .............................................. AATGCAGTTTCAAGTTCATAACTGCGATTG 2731246 46 100.0 30 .............................................. TAATTTTCGGGGGCAATCGGGGAAAGTGTT 2731322 46 100.0 30 .............................................. AGTTGAAACCATCCCCGTCGTAACTGTGCC 2731398 46 100.0 30 .............................................. GCGGTGGATGGCTTCAAACGTGGAGATAAA 2731474 46 100.0 29 .............................................. ATTACGGACTTTTCAAAGTTTCTGCATTC 2731549 46 100.0 30 .............................................. CCAAGGATGTATGATTAAACGAAAAAAGAG 2731625 46 100.0 29 .............................................. TATAAATCTTGTACCAGATTGGGTTATAT 2731700 46 100.0 30 .............................................. AGGATGTGTCTACCAGGCAATTCAACCCAT 2731776 46 100.0 29 .............................................. ATGGATTTGCCTGTGAGGGTGAATACAAT 2731851 46 100.0 30 .............................................. TAAAAATTTTGGGGGCCGTTTCATAATCAG 2731927 46 100.0 30 .............................................. AGGTAGCTGTGAACTATGTCACCGATATGA 2732003 46 97.8 29 .......................G...................... GTGGCACGGTGGCACGTGTTTTTAGGGTC 2732078 46 100.0 30 .............................................. AATATGACCGCATTGACCTGCATGCGGTGG 2732154 46 100.0 30 .............................................. TAGTCGATGTCAAAAATGATTACAACAGAA 2732230 46 100.0 30 .............................................. CTAAAGGCCGATGGTGTTACAGACAAGACA 2732306 46 100.0 30 .............................................. TAGTGGACATATAGCGACTAAAATTTATGT 2732382 46 100.0 29 .............................................. TGCTTTCCGCACCGCAACATCACTTTATC 2732457 46 80.4 0 .................................T.T.GCG..GCGG | T [2732491] ========== ====== ====== ====== ============================================== =============================== ================== 53 46 99.6 30 GTTGTTAGCAATCCACCAAAGGTACAATTTGAAAGCAATTCACAAC # Left flank : GAACCATGGAACGATTAAATGAGTATAGGGTTATGTGGGTAATGGTGTTTTTTGACTTGCCAACCGAAACCAAAAAGGATCGGAAAATCTATAGCGACTTTCGAAAGAAAATGCTGAAGGATGGCTTCGTTATGTTTCAGTTTTCGATATATATACGCCATTGTCCTAGTCGCGAAAATGCAGATGTGCACATAAAGCGGGTTAAAAAGATGCTGCCCGAAAGGGGCCACGTGGGCATTATCAGGGTAACTGACAAACAATTTGGTGAGATGGAGCTATTCATTGGCAAATCGCCTGAAAAAGTTGAAACACCATATTTGCAACTTGAGTTGTTCTAAATAGTAATCAAATCATAAAGCAAATTGAGGGCTTCGCATTAAGCGAAGCCCTCAATTTAAAAACAGTTCCTTACCAGTACTGTTTCCCAAATTGCCAACAACATTTTTCAATCCTAATTTTCGAGGTAAATTACAAACATCCAGGCGATTGTGTTGGGGTCT # Right flank : GAAATCGGCGGAGCCAAAGCAATGCATACTTCCGCTAAGTGTGTCACATCCTTCATCATCCTGTTAGGCGGTTGTTCCACTCATTTTTCAAGTTCTCAAAATGTTGGCATATCGGTTATTGTCCATATATTTGTGCTAGTTGGTAATGCGGGTAAGAAAGTGCCATTAACCGCGGGAGGAGGGACACTGACAGCTGAATAAGACCAGCGTATTGCCAACAATCCCGATTAAAAAGAGAGGTAGCCTATGACTATCTCTCTTTTTTGGTTATCAAACTCTACGCTACTGAAGAGCCTTCCCATTGTTCTCGTTAATTGGGAGCCGTGTGCAACTGGTGAAGATTTCCAAGTTTTACCTCAACTATTGTTACCACACTCACATTGTTATCAGCAATTCCCCTTCGCAGTAATTAATTATTTAATACGTTGATAGTTTGTATGTGCCTGTGTTAATGTTTGTTATAATAATAATGATACATGGAGGCTATTGTTGACTTCCAT # Questionable array : NO Score: 3.24 # Score Detail : 1:0, 2:0, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTTAGCAATCCACCAAAGGTACAATTTGAAAGCAATTCACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.04%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.60,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0.37 Confidence: LOW] # Array family : NA // Array 2 2876281-2873678 **** Predicted by CRISPRDetect 2.4 *** >NZ_KI912105.1 Alkaliflexus imshenetskii DSM 15055 strain Z-7010, DSM 15055 AlkimDRAFT_AIB.5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 2876280 30 100.0 38 .............................. TGCAGAGTTGTATCTCCCTGTTCGCGGTGTCGCTCCAG 2876212 30 100.0 35 .............................. TGCGAGTAGGATTTACCTTCGAACACGTTAACAAT 2876147 30 100.0 37 .............................. TTGAAATTGATGACGAACGCTTTGTTTTTGATGATAT 2876080 30 100.0 38 .............................. GAGTTAATACTAACATATTAGAAACTAACGGTTTAAGT 2876012 30 100.0 34 .............................. ATATTATAGGTGAATTATAATTATATGCAGAACG 2875948 30 100.0 37 .............................. CACTAAGAACTTGAATGTCTGGACGGATGCTTCGGAG 2875881 30 100.0 36 .............................. TGATGCCACCGAATGTTTTGATAGCCTCTTCGAGCA 2875815 30 100.0 37 .............................. GAAACACGAACCTCAGATGTTACTCCTACATAGTTAA 2875748 30 100.0 36 .............................. CCGGCAATGATGGCAACAACTACGGCACAAAACATG 2875682 30 100.0 37 .............................. TCTATCTTGAGATGCGTGTAAGCGATGAATATTTCAG 2875615 30 100.0 37 .............................. TCCTCTACGAAAATGGCGTTTTGATTACGCCTTTCCA 2875548 30 100.0 36 .............................. TAAATACAGTTCGCAATTTTCATCAGCCAATCCAGC 2875482 30 100.0 36 .............................. TTAATTGATTGTCGATTCCTTATCTGGCACTACCTC 2875416 30 100.0 36 .............................. AACGATGAAGAGCTAAGAGGCACAGGTGAAATCATT 2875350 30 100.0 35 .............................. GATTTAAATTTCTTGCTATGAAGATAGTATATAAA 2875285 30 100.0 35 .............................. TTGTTCTATAATGCCTTTCTGCTCCACCTCTGTGT 2875220 30 100.0 35 .............................. TTCTAAATTTCGAGGGTACATTTTTGCCGTTGCAA 2875155 30 100.0 37 .............................. TAAGGACTGTTAGTGTTATTAGCATTTTATCTTAAAA 2875088 30 100.0 36 .............................. TTAGGTGAGTAGACACAGAAAAACATATAATTCCCT 2875022 30 100.0 36 .............................. CACCCTTATACTTATCATACATACTATGGATTAACT 2874956 30 100.0 38 .............................. AATGATAATTATCATAAATACGTGTCAGACGTTAAACA 2874888 30 100.0 34 .............................. ATATGGGTGCAAATACTGCCAAAACTGAATTTGA 2874824 30 100.0 37 .............................. ACTTTTCGAGCGATTCGAGCGCATCGGTTAGTGCAAC 2874757 30 100.0 35 .............................. CAGGGATGGTGGCATTTCTCCGTTATCGGCAAAGG 2874692 30 100.0 36 .............................. TCACATCAGGCTCCACCAAGTCGATAAACTGCTCAA 2874626 30 100.0 36 .............................. AGTTGTGTATCCGTTACAGCACTTACCGCCACCTTT 2874560 30 100.0 34 .............................. TTTATAATGAATATTATCGTGACCAAACCCTTTG 2874496 30 100.0 35 .............................. AAACATGACTTGTACGAGGGAATTAAAAGAACGAC 2874431 30 100.0 35 .............................. CATTTAGTTTTGTGTAATTCGACAGGGTTGTTTTC 2874366 30 100.0 37 .............................. TCTGAGATAACCTTGTTGTCTCGTAGTATAAAATAAC 2874299 30 100.0 36 .............................. ATTGCTGGTGAAGCAGATGTTAAATATAGACATAAT 2874233 30 100.0 36 .............................. GGCGATTCCTTTAGGTTAAACACAGAGGTATTTCTA 2874167 30 100.0 36 .............................. ATAGTAATATCTGAGGTGCTTCAAACTTCGGAAACT 2874101 30 100.0 35 .............................. GTATTTGGACAACCAGGTTTAATTGACCACGGATA 2874036 30 100.0 38 .............................. ACAAATCGTCCATCTTCTTAATGCCGTGATACACTGTT 2873968 30 100.0 35 .............................. CAGGGATGGTGGCATTTCTCCGTTATCGGCAAAGG 2873903 30 100.0 35 .............................. TCAGTTAATAAACGTGATGTACAACTATTTCTTAA 2873838 30 100.0 35 .............................. GTATTAAAGACTTCAAATTAGTATATGTTTTATCG 2873773 30 100.0 36 .............................. CTGGTAAGATTGGCTTGGGCATTCGATACGGCAACT 2873707 30 96.7 0 .............................A | ========== ====== ====== ====== ============================== ====================================== ================== 40 30 99.9 36 CTCCCAACCGCACCATAGTGGAATTGAAAT # Left flank : CTGACATTGACCAGATGACAGCTAAACAAAAGCCCGAAACGGCTCCAGAGCGCATTTTAAGATTGACAGGATTTGACATAACCAAATGTCCGCATTGCAAAACGGGTCGTCTGATTGTCATCAGAACCCTGCCCAGGATTCGGTCACCCGCAGGGCATCTGCCTTCTAGGCTTTTTGATAAGTTGCAGTAACCAACATTACATTCCCTTTAAAAACTTCATTCACATGAGGTTCGGCATCGTATTGCCTTGACGGGGAGGGTTAAGCCCAAAAGAAGCTGGTTTTCAACATTTGAAACACAAAGACCACTCATCTCTTTAACCGAAAAGGTTAAAAACAGCACGAACGCAGCATAGGCGTTCTTGCCAAAAACATCAAAAACCAACAAAAAGTCCATAGCTGCCAGTTGTAGTCCAGACGGGATGTCGTTCAACCTGGAATAATCGCTGGGTCGTGCCGACCGCTCATATTCCTATATATTGTACGCAGGGCTTTTGATG # Right flank : TCAAATCGTGATTGCTTGCTGATTAAATTTTCTGGATTACCCAAATAGCTTAAACATTTGGTGTATTTACAACCATCACGTTATCGTCTTCAACAAAAATAACCTGTGAGTTGCTAATGGGAGATAACTTCAAAAGAGAATGATACTTATCGATTATGCGCTCCACTGTTTTCTTAAAGGGGAAGTTTGTGAAATGTGGTAAGGGATAGAAATCGACCATATTTAAAGCTGAAAAAGTTTCCAGATTTGATGCTTTCTCAGAATCATCCAGCATTTTAACATACTCTATATCAGGTGCCATAACAATGGAGCCGGCCGATTCACCAATGTATATCTTCCCCTTCTCTATCTGATTGATGATTTCTTTATCAGCACCCGTTCGTTTTAACTCCTGAAGCAGATAAAATGTATTGCCGCCCGAAACGTAGATGTAGTTGTTGCGATTCAGCTTTTCGGTGATAAGATGAAAATCGGCCTTCGACACATCCAACTCATCTACT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCCCAACCGCACCATAGTGGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.30,-4.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : NA // Array 3 2878938-2878778 **** Predicted by CRISPRDetect 2.4 *** >NZ_KI912105.1 Alkaliflexus imshenetskii DSM 15055 strain Z-7010, DSM 15055 AlkimDRAFT_AIB.5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =================================== ================== 2878937 30 100.0 35 .............................. GACGACTTCAATCTATTGAGAGATGCTGCAACTAA 2878872 30 100.0 35 .............................. GCGGAAATGTGGTGAAGTTTGTTCAGGAAATTGAG 2878807 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== =================================== ================== 3 30 100.0 36 CTCCCAACCGCACCATAGTGGAATTGAAAT # Left flank : GGCTATTTAATGGCAAAGAGGCTGATGGTCGCTACAGCGTCAAAGGATTATCCTGGGTTATGCGGGAAAGCCTTAAGAAAACCACCATCTCTAAAAACGTGAACCTTCACTCCTTACGCCACACGTATGCAACCCATTTATTGGAGCAGGGCTTAAACATTGTAACCTTACAGGAGCTTTTGGGTCATGCCGACATCACAACAACCATGATTTATCTTCACACAGCCCAGTGTCAGCATATCACTCCTCACAGCCCCTTAGACACACTCTATGGAAAAGCCATACAAAAGCAAGCATGAACTGGCTGATGTTGTTTGCCAATTTGGAGGAAGTTTGTTGCAGAGCGGGGCGTTATCGCCCAGGCAGATCAAAGTCTTTCACAACCTTGTGCAGTGCCGTACGGCCGCTTTGGGTGGACATGAGCAGGTGTGTGATGATTGCGGAGTCATACACTACCCGTACAACCGCAGGTGCCACCCCCCCCCACATATCCTTGCGAT # Right flank : TGCACTATACATAGTGTTGAACTAAATCCCTCCGGGATAGCCTCTTTCAAAAATAGCATTAATCTTTTTAGATGCAAGCCGTTATAACTGCATTACTCACTTTTAAATTATGCAGTTATGAGAAAGAAAACAACCTTAACGATTGTAGAGCGCGCCCTCGTTCTTGTTCCGGAGTTTAAGGCCAGGGCTTTAAAGATGGAGCATCAGGTGGTACTTCGTGGACAGAGTCAGAGCACTCTGAATAATTACATTCGGCGCATAGCGCTGTTTGTTATCCATTTTAAACAACTGCCCGAAGACGTCACCGAAGATGAAATCAACGAGTATCTGGTGGCTTTGGCACGCGATGTCAAGGCTCCTTCGCGGAGCAGTTTCAAGCACATGGTTTATGGCCTAAGGTATTACTACCGTTTGCTGGGCATGAACAAAAAGGCCATTGCTTTGCCTTCATTAAAGCAAGAGAGCAAGTTGCCGGTTGTGCTGAACCGCCAGGAGCTAAA # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCCCAACCGCACCATAGTGGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.30,-4.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [61.7-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.87 Confidence: HIGH] # Array family : NA // Array 4 2890208-2879698 **** Predicted by CRISPRDetect 2.4 *** >NZ_KI912105.1 Alkaliflexus imshenetskii DSM 15055 strain Z-7010, DSM 15055 AlkimDRAFT_AIB.5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 2890207 30 100.0 34 .............................. GTTGTAATATCTGAGGTATTACAAACTTCGGAAA 2890143 30 100.0 35 .............................. GTATTGAAACTAAGTCTTCCTGAGTGTTTACGATT 2890078 30 100.0 36 .............................. AATTTGAACCGCCAGTTCATTGAAGCAAATCCAACT 2890012 30 100.0 34 .............................. GAGGCTCAAATGCAGCGTTTGGTAGCTGCTGGTC 2889948 30 100.0 34 .............................. CAATCTGGATATAACTATCAGGCTCGATTAATAA 2889884 30 100.0 37 .............................. GGGTTATTTAACGATTTAAAATGTAAAAAATTAACAT 2889817 30 100.0 34 .............................. GAATGAAAAAAGGAAGCGAAAAATATCCCCAAAT 2889753 30 100.0 36 .............................. AAATTTTGTGCAATCTCAAAAGATTCGTTTATCATT 2889687 30 100.0 36 .............................. TTAGTATTTGAATATCAGTCGTAGGACTTGATGTTT 2889621 30 100.0 35 .............................. TCAAGTAATTAATGATAAATCCCACTTTGATTTTA 2889556 30 100.0 34 .............................. AACATTTCAAATCTAAAATGCTCACCGCAATGAG 2889492 30 100.0 34 .............................. GTATATATCCCCCTGCTAGATTTGCCTCATTGTC 2889428 30 100.0 35 .............................. TGTCTATCATTCTTTGAACCTGTACCGGATTTGAT 2889363 30 100.0 35 .............................. AATAAATCTACAATGCCTTCTGTAACCTCTTTGCC 2889298 30 100.0 36 .............................. GTATGTAGGTGTGTTGACCGGATGAAAGCCTTTTGG 2889232 30 100.0 34 .............................. TAATAATTTGTGGGTTTTACAATGCCCGCCCAGA 2889168 30 100.0 36 .............................. TCAATGATGTAAAACAAATCATTATGCCATATACCA 2889102 30 100.0 35 .............................. GTCTTTAGGCAGAACTAACCAATCACCCTCTGTCA 2889037 30 100.0 35 .............................. TTATCAGAATACTGTTTAATGAGTTGTATTTGCCT 2888972 30 100.0 35 .............................. TTAGGCACAACTTTCTCTATCGGTATCAACTCAAC 2888907 30 100.0 37 .............................. TTACTTTCCGTGGTCAGTGCGGCGAGCTGTGGTATCG 2888840 30 100.0 37 .............................. ACAGCTTTGCACGTGGCAAAACAGAGAAAGAACTGCG 2888773 30 100.0 36 .............................. ATACATCGGTTATCTGAATACAGCCGGTTCAGATCC 2888707 30 100.0 35 .............................. ACGAAATTGCCAATCTGCGCAAACAAATCCACGAA 2888642 30 100.0 34 .............................. AAAGACTATTGCGTTGTAATCCTGCAAATTCAAG 2888578 30 100.0 34 .............................. GAGTGTCTATATACTTTGCGTAAATCAACACTTT 2888514 30 100.0 34 .............................. ACAATAAGAAGGTGACGCTGCTCAATGTCATCGA 2888450 30 100.0 35 .............................. AACCTTGTGTGAGCCTGCTGATTTTCCTATCGGTT 2888385 30 100.0 37 .............................. TTAGTTGCACCTGTTATGCATAGAGTAAACGTATTTA 2888318 30 100.0 37 .............................. ACACTTTACCTTCAATTGCTAAAACACCTTATTATGA 2888251 30 100.0 36 .............................. ACAAGAACAAAGAATCAAGGTCAGGAGGCTATGCAA 2888185 30 100.0 35 .............................. CTTTTAAGCCTTTCAATAAAGGTTCAAAATAGATA 2888120 30 100.0 36 .............................. AATTAAAGAGAAAGGACAAAAAGTAATGAGAAGAAG 2888054 30 100.0 35 .............................. TAAAATCGTGAGCATTTAATGAGGTTGTTAAATTA 2887989 30 100.0 35 .............................. CAATAAAGAATTCATATTAGTAAAATAAGTTTCCA 2887924 30 100.0 35 .............................. CCGTTACATCCTTTGTAACTTGGGTTTTAACCAAA 2887859 30 100.0 36 .............................. ATTGTAATTTCTGAGGTGCTTCAAACTTCGGAAACT 2887793 30 100.0 37 .............................. ATTTAAAAGGTTCTTTGAAGAGCATGGTTTCGTCATT 2887726 30 100.0 34 .............................. AAAAATCAAAGTTGCATTTCAGAAAGCAAAAATC 2887662 30 100.0 36 .............................. GCATTTTCAAGAGCGTATGTGAGCTCCTTGGTCTTT 2887596 30 100.0 35 .............................. GATAGAGCTGGCTAGAATGGGAAAAACGGAGGCCG 2887531 30 100.0 36 .............................. CAAAAAAATAAACGTGCGCTTTGCCTTCGCCTCCAT 2887465 30 100.0 36 .............................. TTGTATTTAACCAGGACAACCGCGAAGGCGACATCT 2887399 30 100.0 37 .............................. AAAACAGGGGCTTTTTTGTTGGCGCAAAAAAAAAAGT 2887332 30 100.0 35 .............................. TGTTTATCGCGCGCCTCACCTCTTCTAATTTTACG 2887267 30 100.0 36 .............................. ATGATCCGGAATTGTTCGACAAGTTGCTGGATGACT 2887201 30 100.0 35 .............................. TCCTTCAAGGAATAGCGTTCTGGCGGCATCTCTGT 2887136 30 100.0 34 .............................. TATTAAGCCAGTTTACATTGTATTGCTCCACAAT 2887072 30 100.0 36 .............................. CTCCATTTCACGGCCCTTAACTGTTGTGAAAAGCTT 2887006 30 100.0 35 .............................. AACCAAGCAGGTTCAGCAGGCTGGCGAAATCAACA 2886941 30 100.0 37 .............................. TAATGTGATGAATCCCCTGCCGCTTGGGGTCGTCCGG 2886874 30 100.0 35 .............................. TTCACTTACAATAATTTTACCGTTTAAAGCTTGTT 2886809 30 100.0 38 .............................. TGATTTCCATCTGCCATATCTTCAGAGAAAAAACCCCG 2886741 30 100.0 35 .............................. TGGCTCCAAAAAACCTCTATTACGCCAAGGGAATT 2886676 30 100.0 34 .............................. ACATCTATGCGTTCTGTATTTTCACAGCTACAAA 2886612 30 100.0 37 .............................. TGAGTAATTGAATGGCTGGTGGCGTGTGCACATGGTG 2886545 30 100.0 36 .............................. ATGTGCAGGCAAAGGCAGAGGCAAAGGTAGAGCAGG 2886479 30 100.0 35 .............................. GCTCTGCCTCATTAGTGCGCGTTATCTCCCACGTG 2886414 30 100.0 36 .............................. AAAGACTATTGCGTTGTAATCCTGCAAATTCAAGCC 2886348 30 100.0 34 .............................. GATTCTGAGATTTTTCAAAAAGAGAAACCTGCCG 2886284 30 100.0 35 .............................. ACTAAAAGCACCTAATTTTAATCAAAACCGCAAAA 2886219 30 100.0 35 .............................. ATACTCAGGACCTTATTGGTGAGCTGGGGCGCGGT 2886154 30 100.0 36 .............................. GATTTAGAAACTTTGTCGAGTTTCATGTTTCATTTT 2886088 30 100.0 35 .............................. CTGTTTTGGAGTTCTGTAAATTATTTGATTATTCG 2886023 30 100.0 35 .............................. ACCTTTTAAGCACGGTCTTTAAGCTTGCAGTTAAC 2885958 30 100.0 35 .............................. GCGCCACAGTGCTGAACTATGACATGCTGAACGAT 2885893 30 100.0 35 .............................. ATTGCATAAACATAGTGTTATAAACCGTGCTTTTT 2885828 30 100.0 35 .............................. TTCAATATTATCCGATAAGCTGATTTTTCAGATAA 2885763 30 100.0 35 .............................. GGTACCTTCTTTGGTTAAGAAACCATGAATGGGAA 2885698 30 100.0 36 .............................. CTCAATGAAACTCCATTTGATTGGATCTGAACCGGC 2885632 30 100.0 34 .............................. TGATAGCACAAGAAATAAACATGTTTGGTGCTGC 2885568 30 100.0 35 .............................. GATATTTTTGGGCGGTGACAGAAGCGAAAGTGATA 2885503 30 100.0 36 .............................. AACGATGAAGAGCTAAGAGGCACAGGTGAAATCATT 2885437 30 100.0 34 .............................. TGTTATGGCGTACCGTTGAAGTTATCCTATCCTG 2885373 30 100.0 35 .............................. AAAGTCAAATCATGCGTAAACAAAGAGCTTGAGCA 2885308 30 100.0 37 .............................. ACCTTACCAGTGGATTCAATCACAGGAAGAAGAAGTA 2885241 30 100.0 35 .............................. TTGATACGGACAAGTATCGCCTTGCCAGTATCGTG 2885176 30 100.0 35 .............................. ACCTATTACCACTTCATTTTGTGTTACAGAGAAGG 2885111 30 100.0 34 .............................. GTGTTTCGCTGACGGCTGAAAAAGCCGCCAGACT 2885047 30 100.0 36 .............................. TGCGGATCAACCGAATGGAAGAAGAGCACGAAGGCA 2884981 30 100.0 36 .............................. TCCAGACGGCGAGGTCGTTCCTGTTTTCAGATGGGT 2884915 30 100.0 36 .............................. TTTTTCAAAGCAGAAACTACTTTATCCCAATTAACT 2884849 30 100.0 37 .............................. GGCATTACGAAACAACCGAAAGACTCGAAGGAATTCC 2884782 30 100.0 36 .............................. ATTTAATTAAGACGTGCATCCTGTTTGACACATTCA 2884716 30 100.0 36 .............................. AAAAAAATGCTACAAGTGAATCAATTCAGCTCCCTG 2884650 30 100.0 35 .............................. GAGGGCACTGTTGGTGTCTTGGATTGGATACCTGT 2884585 30 100.0 37 .............................. AAATGTACTCAAGATGGATTAAAGAATATGAAAATTT 2884518 30 100.0 36 .............................. ATGGTGGTGTGTTTCAGGGCAATAGTTTTTTTAATG 2884452 30 100.0 36 .............................. TATGTTTTTGAAGCATCCTCAATAGATGTTGCTTTT 2884386 30 100.0 37 .............................. ATTCTATTCAACGTCGGAGCTCCCTCTAGCTCATTAA 2884319 30 100.0 37 .............................. GCATTGAGACGCTTACTTTTGGAACCGGGATTACCGC 2884252 30 100.0 35 .............................. TGAGCGTGATAATTGCATGATCGCGCAATCCCTTC 2884187 30 100.0 35 .............................. AAAAGTATGAAAAGAAAGTCGCTCGTTTGCTTAAA 2884122 30 100.0 35 .............................. TCGTGTTTAGTCAGATGAAGGTCAACGGCGATGTG 2884057 30 100.0 34 .............................. CGCCTGCTATGCGCTGCACATCCTTAAGATAACG 2883993 30 100.0 36 .............................. AAGCCTTCTGCCATCTGGCCTCCGCGGCTTTTGCTG 2883927 30 100.0 34 .............................. GAACCAAAATGAGTATCAAGGATCTTATCACCTT 2883863 30 100.0 35 .............................. AGCAAAAGAAAGCCTTACTATGTATGTGAATATAT 2883798 30 100.0 36 .............................. AAGTAAAAAATAAAAGTTAGGAATTTTTCCTAAGAA 2883732 30 100.0 35 .............................. ACAATTACCTCACCGGATAACGGTATTCTACTCAT 2883667 30 100.0 35 .............................. CTTATTTATTTTAGTAGATGTACATAATTGAGTTA 2883602 30 100.0 36 .............................. GACTTTCAGTGCGTTGGTGTAATACATCTCGCCCAA 2883536 30 100.0 37 .............................. CTGATCTTTCAATTATTTCATTAAATTTTCTCATTTT 2883469 30 100.0 37 .............................. ATCTTACTATTTACATTATTAATAATTGTTTTTGATT 2883402 30 100.0 35 .............................. TCCGAACGCCTCCACGTTAATGGTAATACCCTAAT 2883337 30 100.0 36 .............................. GCCCATACGTGTCATTTTGTTAATTATCTGCTCCCT 2883271 30 100.0 35 .............................. AAACGCTTTGGCATTGAAGTAGTTGGCCTTGCATA 2883206 30 100.0 35 .............................. AAACGCTTTGGCATTGAAGTAGTTGGCCTTGCATA 2883141 30 100.0 37 .............................. TGACGCTCAAAGTGCATATAAGCGCGAATCTGACAGA 2883074 30 100.0 35 .............................. TCTTGTATCGGTTCGGGCAGGCAACAAAGCCACCA 2883009 30 100.0 36 .............................. TTTGTTTGCGCTCACGGTTAAATACGTACAAGTCGG 2882943 30 100.0 35 .............................. TCACGAATGAATTTATGTTTCGAACATTGCAATTC 2882878 30 100.0 36 .............................. TCAGAAAAAGCGGTTTGGGATAAATACATTGACAGT 2882812 30 100.0 35 .............................. TCTTTAATTGTCCAAAAGAAATCAGACATTACACC 2882747 30 100.0 35 .............................. ACTCAAACGATAAATTCAAATTTAACTGCTGCGTT 2882682 30 100.0 36 .............................. AAGAAAAACCTGTTGTAAAGCGTGGGCGCAAGCCGA 2882616 30 100.0 36 .............................. CAAGGATGTGCACATTCCGGGGATTTGGAATAAATC 2882550 30 100.0 35 .............................. CCTTCGGAGGCAATCTAACATTTAGCTCGGGAGCT 2882485 30 100.0 35 .............................. CATGAATGCGGATACGCAAGGGGCCACGCTTCATA 2882420 30 100.0 36 .............................. TTGCCCGACAAAGTGCCTAAATCAGCGTCAACAATA 2882354 30 100.0 37 .............................. TTCTTCTGTCAGATGGGAAATTAGAGCGACGCTCTTT 2882287 30 100.0 37 .............................. TTCATACCACATCTCCAGATATTCATCCGATGTCATA 2882220 30 100.0 37 .............................. GAAGGTACTAATCAATACTTTACTAATGCGCGCGCTC 2882153 30 100.0 36 .............................. TTCAACACAGACACCAAAATATAAAAAGCTATAATT 2882087 30 100.0 34 .............................. TCATTACAATAGATAATCGTTCCATGTCAATTCC 2882023 30 100.0 36 .............................. ATCCTCATTATCACCTGACTGACTTTCAACTGAATA 2881957 30 100.0 35 .............................. TCTTGTCAAACTTGCTCACATACTTGCTTTGTGCT 2881892 30 100.0 36 .............................. GTCGTTTTGCGAAGCATACACGCCACAACGATTAAT 2881826 30 100.0 35 .............................. GTGGACACCCCGTCGATATTGATTGTCGTCTGATT 2881761 30 100.0 36 .............................. TCGATAAAACGCACATTATGTCCCGCAGGAATGGCG 2881695 30 100.0 37 .............................. CGTGAAATCTCCAGCAAGGAGACGGGAGCTTATCCTG 2881628 30 100.0 34 .............................. TACGCAGTTGCGGCGTCAATGTGTCCTTACGTGG 2881564 30 100.0 36 .............................. ATTATTGTGAGTGAGAGCACGGTGATGAATTACATC 2881498 30 100.0 34 .............................. CACTTCAACGGCAATTTTTTATAACGCGTGTTGT 2881434 30 100.0 36 .............................. TTACATATTGGCTTCTGTTGATTGTAGTCTCGCGCT 2881368 30 100.0 36 .............................. AAGGATCCGATGTTTAACCGAATATGGCAACGCAGA 2881302 30 100.0 36 .............................. ATACTTTCAATATTCAACAGATGGTAGGATCGCACG 2881236 30 100.0 35 .............................. GGGGAGCCGTGAAGGGGATGGCGTGTACATGAAGA 2881171 30 100.0 34 .............................. GATGGAACAAGCTTGAACCCTTCTACCGTGACAA 2881107 30 100.0 36 .............................. CTGTGTTCAATACATGCACATACTTCTTTTTGTAGG 2881041 30 100.0 35 .............................. ATGGAAGTCGAGGTTGAGCATCACATAGTGAATAA 2880976 30 100.0 36 .............................. AAGGATCCGATGTTTAACCGAATATGGCAACGCAGA 2880910 30 100.0 36 .............................. GCGGATTGGCAGGCACTGTAGGAAGCTTCACCTTCG 2880844 30 100.0 34 .............................. CTAATAATCCATCAATCAGAAGAAAATGAATTTT 2880780 30 100.0 35 .............................. TGGTGTTCATCTCCTCATATTGCCGCGCCTCATCG 2880715 30 100.0 37 .............................. AAAGTCTTTTTATCTTCAAGCATTTGTATGTAAGTTT 2880648 30 100.0 37 .............................. GAACTATCTCAAAAAATGGCACTTGAAGCGGAAGAGA 2880581 30 100.0 37 .............................. AAGGTTCTCTCTATGCTGACATATCCACTGTCACTTC 2880514 30 100.0 36 .............................. TTATGCATCGTGTCAATGTATTTACACATTTCTTCT 2880448 30 100.0 37 .............................. ATGCCAAAAGCTTTTAGATCCTCGTCGTCAAACCCGC 2880381 30 100.0 36 .............................. GAAGCCAGACCACTGCGGATAATTATCTAACGGTTG 2880315 30 100.0 34 .............................. TTTTTGAAAGTGATGTAATTGAAAATATGCAAGG 2880251 30 100.0 34 .............................. CTAATAATCCATCAATCAGAAGAAAATGAATTTT 2880187 30 100.0 35 .............................. TGGTGTTCATCTCCTCATATTGCCGCGCCTCATCG 2880122 30 100.0 36 .............................. AGTTCAACAATGCGCTTTGTTCTTTTAGCCGTCCAG 2880056 30 100.0 37 .............................. AAAGTCTTTTTATCTTCAAGCATTTGTATGTAAGTTT 2879989 30 100.0 37 .............................. GAACTATCTCAAAAAATGGCACTTGAAGCGGAAGAGA 2879922 30 100.0 37 .............................. AAGGTTCTCTCTATGCTGACATATCCACTGTCACTTC 2879855 30 100.0 34 .............................. TTTTTGAAAGTGATGTAATTGAAAATATGCAAGG 2879791 30 100.0 34 .............................. CTAATAATCCATCAATCAGAAGAAAATGAATTTT 2879727 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 161 30 100.0 36 CTCCCAACCGCACCATAGTGGAATTGAAAT # Left flank : AACTACCCCTATGTATATAATTCTCATGTACGATGTAAACCAAAAACGAGTAGCAAAAATGCTGAAACTCTGCCGGAAATACTTGAATTGGATTCAAAATTCGGTTTTTGAAGGGGAAATCACAGAAGTGAAATTACTCGAATTAAAATATAAAGCGGAAGAAATAATGGATTCGGAAACAGATAGTTTAATTATCTTTAAGAGTCGACAGGAAAAGTGGCTTGACAAAGAAATCATTGGCAAGGAACGCTCTGAAATTGATAACTTTATATAACCCTTGGTTGTCGATGTGAAATTTTCAGGCTCTCAATTGGCAAACTATTTTCATATTGTGCACCAATAAGTTCTTTGACATACTAACAATCAAAACCATACACCATATTGTCGATGTCCGGTACTTTTTAAACAATCGGACATCGACAACCTATTAACATTAAAAAGAACAAAAACATAATAGTAAACCCCAAGAAAACCGTTGTTTTTTTTATTAATTTCAACGG # Right flank : TGGTGTTCATCTCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAACCTTAAGATATCCGATATTGACTTTGAGCGCATGGTCATCCACATCCGCCAGAGCAAATACAAGAAAGATCGGATTGTGCCTTTGTCCGCCATAATGGTCATCGGGCTCAAAAAATATCTCAGAGCCGAGAATCCGCATGTTTGGCTATTTAATGGCAAAGAGGCTGATGGTCGCTACAGCGTCAAAGGATTATCCTGGGTTATGCGGGAAAGCCTTAAGAAAACCACCATCTCTAAAAACGTGAACCTTCACTCCTTACGCCACACGTATGCAACCCATTTATTGGAGCAGGGCTTAAACATTGTAACCTTACAGGAGCTTTTGGGTCATGCCGACATCACAACAACCATGATTTATCTTCACACAGCCCAGTGTCAGCATA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCCCAACCGCACCATAGTGGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.30,-4.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [11.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : NA //