Array 1 69406-70431 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_CABIYH010000020.1 Roseburia intestinalis isolate MGYG-HGUT-00076, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence                     	Spacer_Sequence               	Insertion/Deletion
==========	======	======	======	====================================	==============================	==================
     69406	    36	  86.1	    30	T..C..T..T...A......................	TTTCATTCGCCGGTGCTTTATGATTGCTAC	G,C [69410,69419]
     69474	    36	 100.0	    30	....................................	TATTCGACCATCTGCCACACTTAAAAACAT	
     69540	    36	 100.0	    30	....................................	TCATGAATACGTCGGAGAAACGCACACCAT	
     69606	    36	 100.0	    29	....................................	CATGAGGTGCGTATATTCAAGGATGGTAA 	
     69671	    36	 100.0	    30	....................................	CAAACATATCTATTGGTGTATAGAGCATGC	
     69737	    36	 100.0	    30	....................................	ACAAATTCACCGACTACGCCCACGCCGCCT	
     69803	    36	 100.0	    30	....................................	TATGACCAAGGGTTCATGTTCTTCACTGGC	
     69869	    36	 100.0	    30	....................................	GAACTGTTTGGTGCAATCCTTGCATCAGCA	
     69935	    36	 100.0	    30	....................................	TTGTGCTTCATCACATAGTTATCATCAGCC	
     70001	    36	 100.0	    30	....................................	CGCCTGTGGCTTTTCCTTGATGTCCTGCAA	
     70067	    36	 100.0	    30	....................................	ACCCATGTATAACCTTGTTCCTCAATGAAC	
     70133	    36	 100.0	    30	....................................	CAAAGCCGTTCAGAGGTAAACCGCTGTCTC	
     70199	    36	 100.0	    30	....................................	TAACGGAAAGTACATGATTCTTTCTGGACA	
     70265	    36	 100.0	    29	....................................	ACGTCGATATAAGCAAGGCGGGAAATCCG 	
     70330	    36	 100.0	    30	....................................	AGAACGTGAACCCTATACCACTAAAGGGAA	
     70396	    36	 100.0	     0	....................................	|                             	
==========	======	======	======	====================================	==============================	==================
        16	    36	  99.1	    30	GTTGTAATTCCCTGTTATCACTTGGTATGGTATAAT	                              	       

# Left flank :   AAAAAGTATCGTTTTCATTCTGTTTTTCGTTTTTTGTTACTGTTCACTCGTACCTCGTTCCAGTAACGGATTTTGCCGATGCTTCGCATTCCAAATCGGCAAAATATGCTGCCACCACTGTATCATACGGCATTTTCAGTTCAGAAAATGCCTGCCTGTGAACAGTAACCGTTTTTTCGCCGTAGATCCGCGCACAATTTTCTATTCGGGTATCCAAAATTTCTGTTAAATTTTTCTGTTAAATTTTTTCAAAAAATTGTTGACAAATTACTTTTCCCATAGTATGATATCAAATGTGTCTGGCAGACAGATACAAAACAATTTACATATGCGCGAGTGGCTCAGTTGGTGGAGCACGACCTTGCCAAGGTCGGGGCCGCGGGTTCGAGTCCCGTCTCGCGCTCTTCTGTTGAGAAACAGGAAACTTTGATTTACAAGGTTTCCTGTTTTTTGTTGTAGTGTAAAGGTTGATTACGGTTTTTCCGTAATTTCAATATACT
# Right flank :  TAGGGAGCACAAATCCCCACGAACTACAGGGATTCGTGGGGATTTCATCTAAAAAAAATCTTTAATTTGGAAGTTAAATTCTATCGAAAATCTTCTTTTTTCAAAAAACATCCATTAATTCTATTGATTCCGGGGTGTCATCGAACGTTTTCGTTCCTAACATAATTTCCATAGATTCATACTGCTTTTCTGTTAAAACCAGCGCACGTACTGATCCTTTTAAGGGCAGATTTTGTTTTAAACGCTGTTTATGCATTGCAACTGCATCCATACCATTGCATATCCTGGAATATACAGACCACTGCACCATATTGTAGCCATCTTTCAATAAAAACTTACGAAATTTTGTGGCATCCTTTTTCTCTTTTGCAGTTACTACTGGCAGATCAAAAAATACTAACATTCTCATAAACCTATTCATAGCTATGTACCTGTAATTGCATCAGTTCCGGCAACTCCAAATCTGATCTTTTTCCCTGCAAAGCACTACTGTAACTTGC

# Questionable array : NO	 Score: 6.21
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTGTAATTCCCTGTTATCACTTGGTATGGTATAAT
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:66.67%AT]
# 	Reference repeat match prediction:         F [matched GTTGTAATTCCCTGTTATCACTTGGTATGGTATAAT with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  R [-1.40,-2.30] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      R [7-0] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: F [70.0-56.7]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [4.77,0.78   Confidence: HIGH] 

# Array family : II-C [Matched known repeat from this family],   
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