Array 1 18745-21362 **** Predicted by CRISPRDetect 2.4 *** >NZ_KQ948751.1 Streptomyces griseorubiginosus strain DSM 40469 PRJNA299230_s018, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================================================== ================== 18745 29 89.7 32 .C..A........G............... CGCACGTCATGAAGGCCATGCACGACTGGAGG 18806 29 96.6 32 .............G............... CAGTCGTAAGCGAGGGCACCCCGGACGGCTGG 18867 28 86.2 32 .............G...A.....-.A... GCGTAGGCGTAGGCGTTGTACTTGTTGAAGCC A [18894] 18928 29 82.8 32 ...G.........GGC........A.... GGGGTGGACGGTCCGCCCATGTGGATCCTGGG 18989 29 100.0 32 ............................. CACAACCGGTGGGTGGCCGACTGCCCGTGCGA 19050 29 93.1 31 .............G...........C... TTGCCGCGCCGATGTAGATCCCGACGTGGTC 19110 29 89.7 32 ........T....G..........A.... GGCACGAACAACCTGCTCACCGGTGACGCCCG 19171 29 86.2 32 T............C.........AA.... CCGTTCGTCATGCAGTGGTGGGCCGAGGAATC 19232 29 89.7 32 .............C......A...A.... TGCGCGTGGATTCCGAGCGACTCCATCAACGC 19293 29 86.2 32 ...........G.T..........A...G GGGTAGTACTCAGGAAACGTCGTAATCCGCTC 19354 29 89.7 32 ...............A.A.......C... GGCGAGGGCTATGAGGCCATGTTGGGACTCGG 19415 29 86.2 32 .........TG.TT............... GACTACACGGCGCTGTTCGCGGAAGAATGCGT 19476 29 96.6 32 .............G............... ATCCTCGCAGCGCTGCGAGGCGCGATGCCGTG 19537 28 86.2 33 .............G...A...-.A..... ACCCCGCAGCCCCGGTTCCGGAACTTGCGGCAC 19598 29 93.1 32 ...A.........C............... GGCACCGCGCCGGCGTCCGCATCCTGGGTGGG 19659 28 93.1 32 ...........-.G............... TACTCGAGGCCAGGATCCTCGCCATCGAGAAA 19719 29 75.9 32 .............GTAA.A.....A...T TCGTTCGGGCCAGTTTGGTCCTGGACGAGGAT 19780 25 79.3 32 ...........----.....A.......G GCAGGGTGGCGTGGCGAACAACTCGTCATCGC 19837 29 93.1 32 .............G...........C... ATGCTAGCCACCACGGCGAACGCGTACGCGGC 19898 29 93.1 32 ........T....G............... TGCACGAGCATCGCGGCGAGTGCGCCGGTCTT 19959 29 89.7 31 ......A......G......A........ CAGCCGAACTTGTTGTAGGCGTAGATGACCG 20019 29 82.8 32 ..T.CT.......G...A........... GACGGCACGAGCTGGAATCTCTTCTCGGTCGT 20080 29 89.7 10 ............TG.............G. GCGCACAAGG Deletion [20119] 20119 29 55.2 50 TC..GAT..TGGA..A...CA.C...... CGCCACGGGGATGACCCCCAGGTAGTCTTCGTCGCGATCAGCTCGATGAC 20198 29 93.1 32 .............G...A........... GGCGTCGGGTCCGCGCCCCTGCCGATCGGCAT 20259 29 86.2 32 ..........T.........A...AC... GGCACGAACAACCTGCTCACCGGTGACGCCCG 20320 29 82.8 32 ........T....GTA........A.... CGCGGCACCATCACGCGCCTCGATCTCCTGCC 20381 29 93.1 32 ..............T.........A.... GACTTCGTTAATCACGTGGGCATCGTGATGTC 20442 29 89.7 32 .............G........AA..... GGGGACAAAGGGCCGTGGCCGTACGGGTGTGC 20503 29 89.7 32 .............G...A.......C... TCTATGAACTTCGTCGGCGCTAGGAAGGTGCC 20564 29 100.0 32 ............................. AGCTCGTTCTCGTTCTCGGAAGGGTGTGCGGC 20625 29 100.0 32 ............................. AGCTCGTTCTCGTTCTCGGAAGGGTGTGCGGC 20686 29 100.0 32 ............................. AGCTCGTTCTCGTTCTCGGAAGGGTGTGCGGC 20747 29 93.1 32 .....T.......G............... AGGTACCAAGGGACCCGGTACGTCGAGTCGGT 20808 29 93.1 32 .............G.......C....... GTCACCTCCGTCGGGTGTTGGCTGGTTCCTCA 20869 29 86.2 32 ........T.T..GG.............. TGGTTGGAGATGATCGACCAGTCTCCGGACAC 20930 29 93.1 32 ...T.........G............... CAGACCATGTTCTTGGCCAGGGTCTCGACGTT 20991 29 100.0 32 ............................. GGCGGCCAGCGTTCGCAGCACCGGAGGCCGTA 21052 29 100.0 32 ............................. GGCGGCCAGCGTTCGCAGCACCGGAGGCCGTA 21113 29 93.1 72 .............C..........A.... GTTCTGGTGAGTTCGTACCGGGTGGACTGCGCCTGCTCCCCGCACGCTCGGACCGCGACAACAACTGCGTCG 21214 29 89.7 32 ..A..........G......C........ ACGTATCCGGTGCCGACGTAGGACAGGGCCGT 21275 29 96.6 29 .............G............... TCGGCACGCGTCCGGAACTACTGGATGGG 21333 29 82.8 0 .G....T......G..T.......A.... | G [21338] ========== ====== ====== ====== ============================= ======================================================================== ================== 43 29 89.9 33 CTGCTCCCCGCACACGCGGGGATGGTCCC # Left flank : ACTCCCCCAACAACACCTGACCAGCCAGCCCATGAGGCGCCAGCCGCCGATCCAGCCCCATCGCCTGCAGAGAACGCATCTCCAGGCCCTGCTCACGCATCCCATCGGCAAGCTGCTCCACCTGACAGGCAAAAGCAGGAGTGGCCTTGCCGACGTCGTGCACCCCCGCAAGCCACACTGCAAGCCTGCGCCCATCCGCCTCACCACCGGGCAACACCCCGGCAATCAGCCTCCGCACACCAGCGGGCAGCCACTCATCCCACAGGAAACCGGCAACAGCCGCACTGTCCTCCATATGCCGCCACAACGGCATCCACCCATCACCATCACGATCATGCTTCGCCCACACCGACCGCGCCGGCACCCCCAGCAACGACAACAGACCGCAACCAGCAACGTCCCCACTCGTCATGCACAATGCCTACCGGGAAACGAGCACCCCAACAGGCCAAACAAACGAACACGTCTCACACAGGCCGATCCAGACACAACACCTATCC # Right flank : CGGGTAAGGCCGACCGAAGAATGACGACTGGCTGTTGCTAGACCTCGATGTAGGCGACGACGACCACGGTACGCAGGGCGGTGACGAAGTAGAGGATGCGGACGTGCTCGATGTCGTCGGTGTACTGCCGTAGTTGGGGGCCGGTGCTGGTTCCAGGGATGGGGGTGCCGACGTCGGGGTCGACGGAGAGGACGACCAGGGCGCGGTCCAGAGCATGAAGCTCTACCTCGCTGGTGATGTTCTCAAGCTGCTTTGCAGCGGCGTCGGAAAAGGCAATGCGGGCGCGGCGTGGGCCGTGCTGGGCTGGCATCAGGCGACGGCCGGCCGCTGCGAGGTGAGGCGGGCGAGGTGGGTCTCGCGCAGGTCCTCCCACGGGGTGCACTGCTCGGGGTCGGGCAGGCCGTTGGTGGCGATGTCCTCCAGGACCGCGGCGAGCTGGTCGGCGTTCGCGCGGGTGCGGGCCGCGTAGTCGCGGATGGCGTCGGCGGCCGCGGGCTCCA # Questionable array : NO Score: 4.83 # Score Detail : 1:0, 2:3, 3:0, 4:0.50, 5:0, 6:0.25, 7:-0.10, 8:1, 9:0.18, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACACGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCACACGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [42-30] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.78 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //