Array 1 53564-54689 **** Predicted by CRISPRDetect 2.4 *** >NZ_SEWJ01000009.1 Salmonella enterica subsp. enterica serovar 4,5,12:r:- strain 295_13 NODE_9_length_178674_cov_22.1717_ID_17, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 53564 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 53625 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 53686 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 53747 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 53808 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 53869 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 53930 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 53991 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 54052 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 54113 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 54174 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 54235 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 54296 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 54357 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 54418 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 54479 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 54540 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 54601 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 54662 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 19 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTAGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 70947-72366 **** Predicted by CRISPRDetect 2.4 *** >NZ_SEWJ01000009.1 Salmonella enterica subsp. enterica serovar 4,5,12:r:- strain 295_13 NODE_9_length_178674_cov_22.1717_ID_17, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 70947 29 100.0 32 ............................. GGGAAAAATCAATAAAATCAATGATAAGCAGT 71008 29 100.0 32 ............................. GCTGGGTAGTGGAGTAATCATTATGTGTGGTG 71069 29 100.0 32 ............................. CAGTGAGATGCCGCCAATTTGTCAAATAAAAT 71130 29 100.0 38 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGACCGAGA 71197 29 100.0 32 ............................. CCTTTAATCGCCTCTTATCGCCTGGATTGGTT 71258 29 100.0 32 ............................. TTAAATCCATATACGGGCCTTGCGGGTTTGCC 71319 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 71380 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 71441 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 71502 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 71563 29 96.6 32 ......T...................... GTTTGCCGTATCTTCGATCATACCGGAACGGT 71624 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 71685 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 71746 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 71807 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 71910 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 71971 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 72032 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 72093 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 72154 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 72215 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 72276 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 72337 29 96.6 0 A............................ | A [72363] ========== ====== ====== ====== ============================= ========================================================================== ================== 23 29 99.4 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.11, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //