Array 1 30-2181 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCQF01000007.1 Enterococcus pseudoavium NBRC 100491, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 30 36 100.0 30 .................................... TCAGTCTTTTGATCTGTTCGCGGCCCTCGC 96 36 100.0 30 .................................... CGGAATTCTTGAATTGCTGGATCAAGAATA 162 36 100.0 31 .................................... AATGGTTCAACGTATCCAAACCAAATATGCG 229 36 100.0 30 .................................... AAATGCGACCAAATCAACGTAAGGCAGACA 295 36 100.0 30 .................................... TCCTGAAACGGTGTAGCGTTCGTCCTCCAC 361 36 100.0 30 .................................... AAAGATGCCAGCGGAAACAGAGAGACTGAT 427 36 100.0 30 .................................... TTAAAATCTGAATATGCAGGATATACTTTT 493 36 100.0 30 .................................... GAATTATCCAAAAATGGCAACACGTCTTTA 559 36 100.0 30 .................................... TCAAAGAAAGATAGACTGGTCGAGAGTGAT 625 36 100.0 30 .................................... CTAAAAGAATAGCCGTATGCCCGTTATTAC 691 36 100.0 30 .................................... TGTTCCAGTTCCATAAACGCCAATCTTGCT 757 36 100.0 30 .................................... GTTCGTGTTAATGATGATTTTCACAACTCC 823 36 100.0 30 .................................... AGTAATATGCTGGGAACGTTTCTGTAATAA 889 36 100.0 30 .................................... ATATACTAGTGAAGGTCGATTAAATGGATA 955 36 100.0 31 .................................... AAATTATTTTTGGCAACACTCGATATGTTGA 1022 36 100.0 30 .................................... GACAGTTTGTTCAACGTATTCGCTAGAAGA 1088 36 100.0 31 .................................... TATATGAGTGATGGAAATGGCGCGTATGTCT 1155 36 100.0 30 .................................... AGAACTACAAGCTCATATTGATGCTGTGAA 1221 36 100.0 30 .................................... AATAGCGATATTGCACGTTTAAAAGGTGCT 1287 36 100.0 30 .................................... GTATGCAGGGGTATGGGAAAACTATTTCGC 1353 36 100.0 30 .................................... AATTGATAGCGATGAAATTGACTTGTACGA 1419 36 100.0 30 .................................... TTAAAAACGAATCATGATTTGGCACAAATT 1485 36 100.0 30 .................................... CACCCGAACCGGTCAACTTAATGAGCGGTT 1551 36 100.0 30 .................................... ATAATAATCGTTTGCTTCTAAACGGAGTTC 1617 36 100.0 31 .................................... CATCTATTGCCGGTTTTAACGAAATTGGTAC 1684 36 100.0 30 .................................... GCAAGTTCATAAGTGCCGTTATAACCCGTA 1750 36 100.0 30 .................................... CAAAACAAACATCACCGCCTGCTGTAATTA 1816 36 100.0 30 .................................... TCCTAGCCGTTCAGGTGGTACAGACTGTTC 1882 36 100.0 30 .................................... TTATCCGCTTGTTGGGCCGCCAACTTACGA 1948 36 100.0 30 .................................... AGTGTGTCTGCCACTTCTTCCCGGTATCCT 2014 36 100.0 30 .................................... AGTGGATTATAAAACAGGGAATAGATCCAC 2080 36 100.0 30 .................................... CCTCCAAGGCGTAGCAGTAAATCCGAGACG 2146 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 33 36 100.0 30 GTTTTAGAGCTATGTTGTTTTGAATGCTTCCAAAAC # Left flank : TTGCCTTTGTGCTTAGCGCAATATCTATTG # Right flank : CTCGTCACGCAAGTATTTGCTTCCGGCTTATTGACATAGGAGTCTAGTTTGCTATAAAGAATAACAGTAAGCGTTTAGATATGGAGTGCATCGGTTTAACGTCCGATGCACTTTTTTTAATACATCCAGCCTTCATTTTTTACGCTAACACCACGTCTTTTCCACTGCCCAATATAAAAGATGATAATTAAAAAGGAGCGAAAAGGGCAGCTAAATAATTACAAGCTACACAAAAAAAGAACCCACGATAAATTCATGGGCTCTTTTCCTTTACTCTCTTCAAGGGGCTTTCAAAGCCCTAAAATACGAATATAATCTTTTTTCGCGGACAATACGCGGAATACTTTGATAAGTTGACCGTCAAACTCGTAAAAAACAAGGTAATCTTCAATAACCAAATATCTCATATTTGTCGGAATCGAAGTTTTTTTATCAAGTGGAGCTCCTGACAATGGGTGCGTTTGGAGTTGCTCCAAACCATCAAAAATATGTTTCAACAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTGTTTTGAATGCTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTATGTTGTTTTGAATGCTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-2.20,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [30.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.27 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 1 398-31 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCQF01000039.1 Enterococcus pseudoavium NBRC 100491, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 397 36 100.0 30 .................................... TATCAACAACGCTGTTGGGGATGACCTATT 331 36 100.0 30 .................................... ATAGATAAGAACTGTTTAGAGGCTTCGTGT 265 36 100.0 31 .................................... TTTGACCTTGTGGAATGAACGCTTGACCGTT 198 36 100.0 30 .................................... TAATTAGTGGTAGCACAATAACTAGCGATG 132 36 100.0 30 .................................... TGACTGTTCCAGTAGCAGTGCCAGAAGGCT 66 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 6 36 100.0 30 GTTTTAGAGCTATGTTGTTTTGAATGCTTCCAAAAC # Left flank : CGATGATTGATAAGTTAACGTCGACGATTAGCGAATTGATCGGTTATGAGCTGTTGGAACACGAGCTTGATCTGGAAAGTGATGAAATTACCGTCACAGAACTATTTAAAGCTTTAGGAATCAAGATCGAAACGACAAGTGATACAATTTTTGAAAAATTAGTGGAAATCATCCAAGTCTTTAAAAATCTGACCAAGAAAAAATTACTAGTATTAATAAACGTGTGCTCCTATTTAACAAAAGAAGAGTTCGTTGAATTGAAAAATTATATTTCTTTATACAACGCAACGGTGCTCTTCTTGGAACCAAGACAGGTTGAGGGAGCGGAACAATATGTATTAGATGAAGATTACTTTTTGACTACTATTTCCGAAGAGTGATCTTTCTAGACGATCTTTGACAAAAAAATATGTTTCATAAATGAAGCATTCAAGGCTGAAATCTTGCTATGGATGAGTGGCGCGATTACGAAATCTTTGAAAACCAAAATGGTCTACGAG # Right flank : CCATAATTGCTAACGAATTGAAACGGAGGTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTGTTTTGAATGCTTCCAAAAC # Alternate repeat : GGTTTTAGAGCTATGTTGTTTTGAATGCTTCCAAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGTTGTTTTGAATGCTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-1.10,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.14 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //