Array 1 223164-224412 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABADC010000019.1 Escherichia coli strain 103 N103_contig_19, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 223164 29 100.0 32 ............................. CCCGCTAAATATGCCGCGTTCGCTGAACGGCT 223225 29 100.0 32 ............................. GTGATTCTCGCGACAAATTGCGTAACCGGGTA 223286 29 100.0 32 ............................. CGGCTTGTTTAATTGCGTGGAACGTCTCAATT 223347 29 96.6 32 ............................T AGATCGCGCCACGAGGAAACGAATATGAACGG 223408 29 100.0 32 ............................. TGCCGCCAGGCCAGCGACACATCAGACAACTG 223469 29 100.0 32 ............................. GTCTGTGATGGCCTGCTCGTGAGTCCGCGGCG 223530 29 100.0 32 ............................. AATTTTTTATCCTCATAAACAGCCTCAGAAAA 223591 29 100.0 32 ............................. AGTTACGTCGCCATCGATATTAACGGAACACC 223652 29 100.0 32 ............................. CCGCCGATTTCCCTGGCGTCAAAAGCGGTGAG 223713 29 100.0 32 ............................. CTCTTTCTCAGTCATCTGGCGCTCAACGCCGG 223774 29 100.0 32 ............................. GCAGCAATTGCCGGAGTTTTACTAATTGCCTC 223835 29 100.0 32 ............................. TTTTGATTTCATTAACGGCGCTCCCCATATTT 223896 29 100.0 32 ............................. TGCGCCGTAGCGTGTCCACCTATTGTAGTAAA 223957 29 100.0 32 ............................. AGCGTCAATCAGCGCGTCTATCGCGTCACTTT 224018 29 100.0 32 ............................. ATTTGGGGGTATGAGAGCGCCGAGCCGTTCGG 224079 29 100.0 32 ............................. GCTCCCTGTCAGTTGTAATCGATAACGTTGAT 224140 29 100.0 32 ............................. ATGTAGGGGCAATCGAACGATTCTCTGCCGAC 224201 29 100.0 32 ............................. CCGAGCCCGATTATCGGCATGAGCGATGCGGA 224262 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 224323 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 224384 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 21 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATGTTGAATTAATATCTATTAATTTTTTCTTTAGGTTAATAGTTTGTTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGAAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATTACCGTTTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 239914-241041 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABADC010000019.1 Escherichia coli strain 103 N103_contig_19, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 239914 29 100.0 32 ............................. ATATTCAGTCTAATGAAGCGCCATAATATTGC 239975 29 100.0 32 ............................. AATTTCTGGAAAAAAACAAATTCAAAAAATTG 240036 29 100.0 33 ............................. TTCTGCTGCTGGTTTGAAGAGGCGCTGGCACGC 240098 29 100.0 32 ............................. CAAAAAAATAGATTGGAAAACATTTAGATTCA 240159 29 100.0 32 ............................. TGACTGCGGTTCAAAATCTCCGGCACACGTCC 240220 29 100.0 32 ............................. GCCGCGCCGCACTGGCGCTGGCACGGTATGCA 240281 29 100.0 32 ............................. CCCTCACGGGCTATTTGGTTAATCGAAAATTA 240342 29 100.0 32 ............................. CCAGCCCTTGTTAACGTCTTCGCCGTTCGGGT 240403 29 100.0 32 ............................. GCCGTCATTGCCCGTTGAGATACCGCCCGGAT 240464 29 100.0 32 ............................. CCACCACCGCCCCGACACCACATATAGTAGCG 240525 29 100.0 32 ............................. GAAGTCATGAAGACTTCGACTATTTCTTGATA 240586 29 100.0 32 ............................. GCTGTTTGTAAATTTAGAATTGCTGACTGAGC 240647 29 100.0 32 ............................. GAGAAAAATGCTACAAAAATGAGCTACGAAAC 240708 29 100.0 32 ............................. CCATAATCAAAAGCGGCCAGAACTGCCATTTC 240769 29 100.0 32 ............................. ACAAAACGCGATCAATACAGTTTTGTTTTGCA 240830 29 100.0 32 ............................. GGGATGAAATTGAACTTCCAGGCGACCGACAA 240891 29 100.0 32 ............................. GCATATTTCATGCAGCGTTCTGAATGAGTAAG 240952 29 100.0 32 ............................. GCGTGGCGCGGGGCGTATTCCCCGGCGAGTAA 241013 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 19 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAGTCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGCGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCCGGGAAGGCAGGTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [71.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //