Array 1 103724-104667 **** Predicted by CRISPRDetect 2.4 *** >NZ_VDEQ01000249.1 Streptomyces katsurahamanus strain T-272 NODE_488_length_141640_cov_40.541103, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 103724 29 100.0 32 ............................. TGAACACAGCCCACACCACTGCCCCATCCGCT 103785 29 100.0 32 ............................. GCCAGCTGCCGCGTGCGCGGCTCCGGCACGGC 103846 29 100.0 32 ............................. ATCCTTGTCGACGTTGCCGAACGTCTCCGAAC 103907 29 100.0 32 ............................. TGCTCCTTGCCGGGCGTACGGCGGAAGTAGTC 103968 29 96.6 32 ............................G ACGCTGAGACCCACGCCCGCTGGCTGGAGGGC 104029 29 100.0 32 ............................. AGCAAGTCCGCCGACGCGTCGAGCACGACCTT 104090 29 96.6 32 ............................G GAGCAGAGCTGGCCGGGGATGCAGTCGGTGGG 104151 29 100.0 32 ............................. TTGCCGGCGACGGCGACGGCCAGCGCGGCCCC 104212 29 96.6 32 ............................G GGGAGAGCATGGTCGGACCCGTTCACCACCGA 104273 29 96.6 32 ............................T GGCGCATCCAACCTGATCAACGTCTCCGGCCT 104334 29 96.6 32 ............................G ACATTCGAGCTGCCGCGCTTCCGGCCCGGCTT 104395 29 96.6 32 ............................T GCGCCGGGGAGCCTGATGGCTGCCCGCCGCGG 104456 29 100.0 32 ............................. GCCGACCCGATGTAGACCTTGTTGGGCCCGCG 104517 29 96.6 32 ............................T ACCGGGCCTTGCCCCGACCCGGCGAGCACCAC 104578 29 96.6 32 ............................T GGGAGAGGCGCTCACCTTGACCGCGATGGTGG 104639 29 96.6 0 ............................G | ========== ====== ====== ====== ============================= ================================ ================== 16 29 98.1 32 GTCGGCCCCGCGCGTGCGGGGATGGTCCC # Left flank : CGCTTCGTCGACTTCGTCTCCGAGAGCATCGCCCGCGCAGCGGACCAGGCCCGCGACATCCTCCACACAAAACCCGACACGGCCTCGCACCCTCCGGAGCCGGCCCATCCTTCAGCCCAGCTCCCCGGCTGACCGACCGGCGGCCCCCGTCGGAGCCCAGGGGCAGGGCACCAGGGGGTGCCGCCTCCTCTCTCTCCCCTGCCGCCACCGCCTGTGCCTGCGCCCCGGGAGCCCGGCCCCGACGAGCGCGTCTGAAGCCTCGCCGCTCCTGGTTCTCCGCCCCATCCGGGGAGCCGGTGCGTGGGGGCGGGGTAGCCCCCGACAGGGAATGCCTCCAAGGTGGCGTAGTCATGGGAGAGTTAAAGGACACGGGCCGCGTTTCCTCACCCGTCCATAAGGCTGCGCCTGGCACCTCTTCACACCGGGAGACCCCGATGCCCGACTGCTCGCAAGTGAATGAAAACCACTACTCCGCGATGTGAACGCGCAGGTCAGGAAGT # Right flank : GGGCCCACTCGTAATCGCACTCGCTCTGGACCCCACCGGACGCGGACGCCAACGCTGGTCCAACCGCTGGAAAGACGTGATGAACGTCTTCGACAGCCACCTCTCGGCCGAACGAGCGTAGGCCAGTCAGATCAACCAGAAACGCCGGGAGGGGGAGGGGCAAATGAGTGCGACACCCGCCGTATCAGCGGAGGAGACCACTGCGGGCGGCGAGGCCGTGCAGGTCCGTCGTGGTGGGCCCGGATGCCAGCAGGTCGGCGATGAGGGTTCTGGTGGCCGGGCGGGCGTGGGTCTCCTCCGGGGCGCAGCGTTCCGCAGCAAGAAGGGTGCGGAGGCAGTCGGTTCGGCGGCCGAGGCGGTGGTAGGTGAAGGCGATGTCGCTCAGGGCGCGGGAACGGCGTTCGATGCTGGGGAGGGCTCTGAGGGGGACGGCGCGGGCGGCATCGAGGGCGGCGAGGGGGTCGCCCGCGTGGTTCTCGGCACTGATCCGGTGGAGTTGG # Questionable array : NO Score: 5.85 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCGCGTGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGTCCCCGCGCGTGCGGGGTTGGTCCC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [46.7-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 19328-18385 **** Predicted by CRISPRDetect 2.4 *** >NZ_VDEQ01000259.1 Streptomyces katsurahamanus strain T-272 NODE_545_length_23280_cov_37.965591, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 19327 28 100.0 33 ............................ GCCGATCGAGGACGCGATCCGGGGCCTGGCGGC 19266 28 100.0 33 ............................ CCCGCAGCCGACGCCGCGCCCGCCACGTGTGCC 19205 28 100.0 33 ............................ CTGGCACATGATCCAGCGCCGGGCCAACTCGTG 19144 28 100.0 33 ............................ CCGGGCCGCATAGAGGGCGCCGAGGCGTGCCGC 19083 28 100.0 33 ............................ TTCATCGAGACGGCGGCTTTCATCGTCATCTTC 19022 28 100.0 33 ............................ ACCAGCACACACACCGCCAGCAGCCCGCCCCTC 18961 28 100.0 33 ............................ TGGACACCACGGCCTACGTGGCGTTCACCGGCC 18900 28 100.0 33 ............................ TAGGGGGAGTCTCATTTTGCAGGCGTCCCAGTC 18839 28 100.0 33 ............................ GCCGGGGGGGGGGAACGCCTTCAGGCGACGTTG 18778 28 100.0 33 ............................ GACTCCGCGCATCTGCCGCATGGCGGTGCGCAT 18717 28 100.0 33 ............................ GATGGGACCGGCCCCGGACCGGTATGTGCACGG 18656 28 100.0 33 ............................ AGTCGCCGACGTCCCCGACGACTGCCACCCCTC 18595 28 100.0 33 ............................ TGGGCCTCTGCGAGGCTGAGCCGGTCCAGCACG 18534 28 100.0 33 ............................ TCGTGACCCCGGCATCTCCACTGGTCAGCGGAG 18473 28 100.0 33 ............................ CGGGATCCACGTCGATGTGGCGCTGTCGCGGGC 18412 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 16 28 100.0 33 GTCGGCCCCGCGCCTGCGGGGATGGTCC # Left flank : CATCAGCGGGCCGCCGCTCCTGATCGTGACAGCCGTCCAGATCGTCCATATCTGACACCTGTAGGCCCGCCCACACCCGGGCGGGCCTGCGTCGTTCAGGGCTGCCGGGCGAGGAGGTCGGCTGCCCGTTCGGCAAGGTGTTGGGCGTCGGGGTACCGGGCGAGGCGGACGCCCAGGTCCTGGGCGGAGTCGCGGACCCGGTTCCTGAACGCCCTCGGCGGCGTCCAGGAACCGGGCCCAGACTGTGAGGGCGCTGTCGAGGGAGCCCTGGCGGGGGTGGAAGGCACCGAGCTGGCCGTCGCCAACCCCGACAGGCCCCTGGCCAGGGCTGTCCCTAAGGTGGCGCGTTCATGGGAGAGTTGACGGACACGGGCCCCGTTTCCTCACCCGTCCATCAGGCTGCACCTGACACCTCTTCACACCGGGAGACCCCGATGCCCGACCGCTCGCAAGTAAATGAAAACCGCTACTCCACGATGTGAACGCGCAGGTCAGGAAGT # Right flank : CTTCCTGCTCACCGGCGTCTACGACCCCGACGGCATGGGTGCCATGTTCTTCGCCGTCCTCGCCGTCGCCGGGCAGATCGAGCGCAACTACATCCGGGAGAAGACCCTGGAGGGCCAGGTCACCGCAGCGGCCAAGGGCAACCACGGCGGACGGCCGAAGGTCATCGACGACGACTCCCTCACCTTCGCCGTCGCGCTCAAGGACAAGGGCGTCCCCGTCCCCGAGATCGCGAAGAAGCTCACCATCAAGACCGGCAAGAACGCGGGCAAGCCCCCCTCGGTCGCCTCCCTCTACCGGGCACTCGCCGAAGCCGAGGCCGCCGCGACGGACGACGGCCTGCCCCTGCGCCCCAAGCCCGCCCGTATCCACAGGCCCGAGGACCCGCTCACCGCCGAGGACCTGGAGCTGCGCGAGCGCCTGACCGCCCAGCGCGCCGCTCTCACCGCCGCCGAGCGCGAGGAGGCCCGCCCGTGATCCCGGGACCGCACCGGATGAAAGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCGCCTGCGGGGATGGTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGGCCCCGCACCTGCGGGGATGGTCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [35.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 5687-6876 **** Predicted by CRISPRDetect 2.4 *** >NZ_VDEQ01000260.1 Streptomyces katsurahamanus strain T-272 NODE_549_length_17096_cov_37.416588, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 5687 28 100.0 33 ............................ GAGGGTTTGAGTGCGGCATCGAGCTGGGTCAGC 5748 28 100.0 33 ............................ ATGGCCCGCGAAGGCTACCTCGAGCGGAAGAAG 5809 28 100.0 33 ............................ GCCCTTGCCGACCAGGGCCAGGACGCCGAGCGC 5870 28 100.0 33 ............................ CCCGTTGGGTTGGTGGCCGCGCGGCGTTTGGCG 5931 28 100.0 34 ............................ TCAGAGCGACCATGAACCCCACCCACACCCGAAG 5993 28 100.0 33 ............................ CGAACGGCGGCAGCGGTGCCGCCGTACCGGCAG 6054 28 100.0 33 ............................ TTCGTTCTAGACGTGTCGATGGGAAATCCATAT 6115 28 100.0 33 ............................ CGGGGTCCCAGTACACGTCAGCAGCTCGTACTA 6176 28 100.0 33 ............................ TTCTCGCTCTCGCCTGCTTCTGGATTTATTGCA 6237 28 100.0 33 ............................ CCCCTCAGCGGGGGCGGCCTCGGCGATCGCCAT 6298 28 100.0 33 ............................ GACGGGGGGGGCGAGGAACGCCTTCAGGCGACG 6359 28 100.0 33 ............................ CGGGGGCGTGCCCCCGCGTTCCGTGCCCGGTAG 6420 28 100.0 34 ............................ GACCATGGACGGCCTGATCAGGAACGAGCGCTTC 6482 28 100.0 33 ............................ CGGCCGCAACAGCCCCCGGCTGGGGGCGGGCGC 6543 28 100.0 33 ............................ CTCTGGGCGGCGGCTCAGGCGGTCGTGACCGTG 6604 28 100.0 33 ............................ GCTGAACTGCTTGATGCGCCGGCCCTTGAGCAG 6665 28 100.0 33 ............................ CGCCGTCGGAGGCCGCGGCACCATAGCGTGGTT 6726 28 100.0 33 ............................ TGATCTCAGTCACTACGGAAATCAAGGGCCGTG 6787 28 100.0 33 ............................ GAGGGCGCCGACGGCCGCGGCACCGTTCTTGAG 6848 28 89.3 0 ......................CCA... | A [6869] ========== ====== ====== ====== ============================ ================================== ================== 20 28 99.5 33 GTCGGCCCCGCGCCTGCGGGGGTGGTCC # Left flank : GAAGGGCCCCAGGGGGGCCGACCGTTGGAGACACCGAAGATAGTGAAGACGGGGCTAGCCATCTTTGATCGCCTACGGGCTGAGGCGCTGGGGCATGATGCATCTGTGGCCCGCATCCAAGAGATTCACAAGGAGTACGCGCGATGACTTCCGAATTCGACGCAAAGGTCGCTACATGGGTCAAGAGCACCCACAGCGGTCCCGATGGAGGTGAGTGCATCGAGTGGGCCCCCGCGCACACGACCGCTACCGGCGTCGTCCCCGTCCGGGACAGCAAGCGCCCGACCGGCCCGGTCTTGATGCTCTCCGCCGACGCATTCGCCGGACTGGTCATCCTCGCTCGGTCCACCGAGCTGTAGAGCACGGCCCCGAGCCCCGCCGACTCCGCCGTCCATCAGACTGCGTCCGGCACCTCTTCACCCCGGGAGGTCCCAATGCCCCACTACTCGCAAGTGAATGAAAACCGCTACTCCACGATGTGAACGCGCAGGTCAGGAAGT # Right flank : CTGGACCCGAACGGGTGGGAATGGCGGTTCACATGGCACGTGATGAGGCGATTTGCCTAGGCTGCCTCGGCATGAGGGGGCGGCCATCGAGGCCCGCCTCGTGGTGATGGGTGCGGGGGAACAACCAGTGAACCGCAAGGGCGAGTACGGCAAGTTGGTGCGGGACCGGGTTCCGCAGATCATCCGCGAGGACGGGGCCGAGCCCGTCACCTACATCGCGGGCCCGGAGGAGTACCGCAACCGCCTGCGGGAAAAGCTCGGCGAGGAGGTCGCCGAGTTTCTGGAGGCCGACGACTCCACGGCACCGGAGGAACTCGCGGACGTGCTGGAGGTCGTGCAGGCGCTCGCCGCGGTCCTGGGGATCGACGCGGGACAGCTGGAGAAGATCCGCGAGGCCAAGGCGAGTGAGCGCGGCGGCTTCGCGGACCGGATCGTCTGGACCGGCAACCGATGACATGACGGCCGCTTCGGCCATCATTCGGTACACCACTTCGTGCACA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCGCCTGCGGGGGTGGTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [0,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGGCCCCGCACCTGCGGGGATGGTCC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1489-1217 **** Predicted by CRISPRDetect 2.4 *** >NZ_VDEQ01000055.1 Streptomyces katsurahamanus strain T-272 NODE_88_length_23831_cov_34.611767, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1488 28 100.0 33 ............................ GGGCTCCTGCGGCTCCAGGCTGGTGGTGCCGAG 1427 28 100.0 33 ............................ CCCCCTGTAATAGCGCACCGGATCCCAGTGCTG 1366 28 100.0 33 ............................ CATGGGGCCGCAGCACGTCAGTGCCGTCGCCCG 1305 28 100.0 33 ............................ GGAAGCCCGCGCTGCAGACCACCACCCCAGCGG 1244 28 96.4 0 ...........................T | ========== ====== ====== ====== ============================ ================================= ================== 5 28 99.3 33 GTGGTCCCCGCGCCTGCGGGGATGGTCC # Left flank : GCTCATCGTCGACCGGCTTTTCCAGGCGGCCACCGACGATCCTGTCGATCTCCACCGCCACACCCCCACAAGACGTGTCACCGAGTGGCTACGTTAAGCAACCGTATCGGGTTGTCCTCCTCCGCACCCGCGATGTCGTTCTCCTGGAGGGCGGTGGTGGCCAGGAGGGCGTGGTTGAAGCCGTGGGCGCGGAGCATGGTGGCCGGGTGGGCGTGGTCCCCGCGCCCACGGGCTCGTTCGGCGCCGACGCTGTATCTGTCCCGGCTCGGCCGGGTCGTTCCCGTCGTTCGGGCGGGCTGGCGCTGCTTGTCTGCGGGCGTGGGCTGGCGGTGACGCCGGTGGCGGGTGTGGGAAACCGGCGGCGCGGCCACCATGCTGGCGGATACGGTGCTACCGACCTGGTGACGCTGACACCCGTACAGCATCAGCACCCGGAGGCTGGCCTGAAGCAAGTAAAGGAAAACGGCATGATCACGTGACAACGCCGCAGGTCAGGAAGT # Right flank : GCCGCGCCCGGACATGGTTGCGGCCCCGGACCCGTCTGCTCGGGGTCCGGGGCCGCAGCCGTCGTGTGCGCGGGGTCAGCCGGTCCGGCCGACGTGGATCACGACGATTGTGATGGTCGCGTCCGTGATTTCGTATAGCACCCGGTAGCGGCCCACGTGCATCCGGCGCATGTCGGCGGAGCCGTACTCGGCAGTGCCCATGGGGCGCGGCTGCCCGGCGAGGAGATCGACCGAGTCCATCACCTGCCGCAGGCCCTCGGGGTCGTCCTTGAGGAACAGGGCCGCCGCGTTGATCGCCGCCTCGTCCCAGATGATCGTGTACGTCAAGAAGCCTTCTCCAGCCCGAGCCGCGCCCGCACGTCCGCGTGCGGCACGCCCGTGACCGTGCCGGACGCCTGCCGCTCCCGGTACAGCGCGAGAGCAAGCGCGTCCTCAAGATCGGCCAGCTCCTGCGGATTGATCAGCACCGCCGCCGGCTGCCCGTGATCGGTAATGGTGAT # Questionable array : NO Score: 6.02 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCCTGCGGGGATGGTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCATGCGGGGATGGTCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-14.10,-14.10] Score: 0/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: R [18.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.77 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 6027-5571 **** Predicted by CRISPRDetect 2.4 *** >NZ_VDEQ01000055.1 Streptomyces katsurahamanus strain T-272 NODE_88_length_23831_cov_34.611767, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 6026 29 96.6 32 ............................T CCGGTGTACACAGCCAGTGCGGGCGTGCCCGT 5965 29 100.0 32 ............................. ACGGTGTTCAGCGTGATGCTGAAGTCGGCGAG 5904 29 100.0 32 ............................. CTGTTGGGGTCGGTGGGGGCGGGCGGGCTGGC 5843 29 100.0 33 ............................. CCGGGCCATCAGGCGCTCGCGGAGATCCCGGAT 5781 29 96.6 32 ............................T CCGTGACCGCCTCGGCGCACGGGAGTACGCGG 5720 29 100.0 32 ............................. GTGTCGAGCGCCGTTCCGCCGAGCCCCCACCC 5659 29 96.6 32 ............................C ATGCCCGCGCTGGAGCCCCTGGTGGGCGACCT 5598 28 82.8 0 .................A...-.C.A..A | ========== ====== ====== ====== ============================= ================================= ================== 8 29 96.6 32 GTGGTCCCCGCGCCCGCGGGGATGGTCCG # Left flank : CGTCTACACGGAATACCTGCTCCGCAAGGTCCGCCGGTGCCAGCGGCTGTTGGTGCGCGCGAGGCCGGGCACCGCGGCGATGTCCGCCGAGACTTCGCCTCGGAAGGGTTCCGGGCGGTGCCCGGAACAAAGGGGTCCGGCGTACCCCGCCCACGAGTGACCGCTGCCCGGGCCGCGTGCCGGACCGCGTCCGCTGCCGCCTCGGTGGAAGGCTTCGCGCGTATGGGGCCGGCCCCGGGAAGTCTGTACCGCCGGGCGGCAGCTCACCGAGATAGCGCGGCCGGCCGGGGTGCCCCGTGGCACCGCTTGTCTGCGGGCGCGGGTTGGCGGTGACGCCGGTGGCGGGTGTGGGAAACCGGCGGCGCGGCCACCATGCCGGCGGATACGGTGCTACCGACCTGGTGACGCTGACACCCGTACAGCATCAGCACCCGGAGGCTGGCCTGAAGCAAGTAAAGGAAACCGGCATGATCACCTGACAACGCCGCAGGTCAGGAAGT # Right flank : ACGCCGGGGCCCTCTCTAGCCGTGGGAGCGGTTCTTTTCGATAGCGCGGAGTCTCCGCGCCTCGTTGACCTGCGCGCTGATCAGAGAGTCGAACAGAGCTTCCGGATCGCCGTCGGGCCCTGCAGTGGTGGAGAGGAGCGTGGCGATGAGGCTGGCGAGAACGGTGACCAGGTCTGCCGATCTCGCCGGACCGCGGGCTTGCAGCAGCTGCCGCACGGCGTCGTCGATGCGGTCCAGGGTCGCCTCGTCTTTGAGGGCTATGCCGAGCCGCTCCGCGAGGAAGATCCTCACAACCGCCACGCCGTCGCCCAGGGCGAGGTCCACGTTGTAGTCGGTTCGCGCCTTCTCCGCTTCTTTCAGGACGGCTGGCATGGTGAACCGCTTGGGCTCCGCCCACAGCCCGCGCTGCTTCCACTGCTCGTACGGGAGCGGCCCGGCAGCGTCGCGGCGGGCGCGGTGATGGTCGGCTGGGTGGCCGTTGCTGGTGCGGCAGGCGTGCC # Questionable array : NO Score: 6.07 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.98, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCCCGCGGGGATGGTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGATGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 13510-13054 **** Predicted by CRISPRDetect 2.4 *** >NZ_VDEQ01000073.1 Streptomyces katsurahamanus strain T-272 NODE_121_length_17471_cov_41.483772, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 13509 29 96.6 32 ............................G CGTCTGACGTGGCTTTACCGCTCGACCCACCC 13448 29 100.0 32 ............................. CGCCGTCGACCCGTCGAGTCCGGCCTTCCGGA 13387 29 96.6 32 ............................C CCCGCCCACACCGTCCCCTGCCCCCACTGCCG 13326 29 100.0 32 ............................. CGAGAAATCGAGGACACCGTGATCATTGATCT 13265 29 96.6 32 ............................G CCGGGATGTGCCTCACGGGGAGCGCGGCCCTA 13204 29 96.6 32 ............................A TCCGCGCCAGGATCGGCAGGGATCTCCGTAAT 13143 29 100.0 32 ............................. CTCACCGGTGTCCGCCGTCTGCGCCTCCGCGA 13082 29 79.3 0 .....................A.CCCG.C | ========== ====== ====== ====== ============================= ================================ ================== 8 29 95.7 32 GTGGTCCCCGCGCGTGCGGGGGTGGTCCT # Left flank : TGAATCCGAGAAATGAACTGATCGCCTACGCGATATCCGTGCTCGCGCTCACCGGCGCCCTCGCATGGGCGGTCCTCCCCAAGCCGTGACGCGCAGGCCGGCCGGGCTGTTCCTCCCGTCCCCCTCCGAGAAGGGTCATGACGGGCCCGTACACCACTCACCAGAGGAGCATCGCCCATGAACGATCTCTACGAACTCCCCTTTCCTGACGCGTAGCTCGAACTATTCTGCGGCGGCAACCTCGGCGGCGAGCACGAAGCATGCGTCGAGGTCAGCGCGATCCCCGGGACCGCAGGCGGATTCGTCGTGCGCGACAGCAAGCCCGAGGGCTCCGGTCGCGAACTGCGCTTCAACGCAGAGTTGACGGGCATGGGCCGCGTTCCTCATCCGTCCATCAGACTGTGCCTGGCACCTCTTCACACCGGGAGACCTCGATGCCCGACTGCTCGCAAGTGAATGAAAACCGCTACTCCGCGATGTGAACGCGCAGGTCAGGAAGT # Right flank : GCGTCAGCGACGGCCCCCGAGGCGAAGCCTCGGAACGCCGGGCGGGCCCGGCAAAAGAGAGCAGTGCCCGGAGGGCATCGCCACGCTCTCCGGGCTTTTGCGCATGGGACCGCCGCGTGAAACCCAGAGCGGAACCGGTCGCAGCCAACGGCCTCCCGACACATCCACCCGGCATGAGCGAAGGGCCTTACAGCAGCATCGCCGTAAGGCCCTTACCTGGCATCCGAGTTGGATCGGAGTACCGTTTCCAGTGGACGCTAGGCGAGGAGACCGGTTATGCCCCAGTGGAGCGAATACACCGACGGCGAGCGCATCAAGATCCTTCGCGGCATGGAGACCCGGCAGTCTGATCTTGCCGAGATGACCGGCCTGTCGCTGCAGACGATTCAGCAGGCCGAACAGGGAAAGCGCCTCACCCTGCGTACGCTCATTCGGATTGCGGACGCGTTGGGGGTCGACACCTCCGTTGTTCTTGGCCAGCAGGCACCGCGCCGGAGCAT # Questionable array : NO Score: 5.74 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCGTGCGGGGGTGGTCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,0] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCGTGCGGGGTTGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [23.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 16969-16389 **** Predicted by CRISPRDetect 2.4 *** >NZ_VDEQ01000073.1 Streptomyces katsurahamanus strain T-272 NODE_121_length_17471_cov_41.483772, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 16968 29 100.0 32 ............................. ACGTTGTTGATGTTGGTGTAGGTGCCCCATGC 16907 29 96.6 32 ............................C GCCCGGGGCCCCGCCGGACATCACCGGCTTCT 16846 29 100.0 32 ............................. CGGGCGGAGGCGGCGTTCGATGCGGCCCGGTC 16785 29 100.0 32 ............................. GGGAACGGGATGTTCGGGCGCAGGCGCGAGGC 16724 29 93.1 32 ..............G.............C TGGAGCCAGAACTGGGCGCCTGTCTGCTGGTC 16663 29 79.3 32 AC..T........AC......G....... GAGAAAATCAGGCTGCCCCACTGGCCCGGGCG G [16641] 16601 29 96.6 32 .....................G....... CCGACCGTCCCCACGTCGCCGAAGCCCAAGCC 16540 28 82.8 33 ..............G......G..-..AC CTGCCGACGCTGGGCTACATGTTCTTGGACTGG 16479 29 89.7 32 ....T................G......C ATCAACTCCGGTGACAGAGACAGTCTCGGCCT 16418 29 86.2 0 ....T................T.....TC | C [16393] ========== ====== ====== ====== ============================= ================================= ================== 10 29 92.4 32 GTGGGCCCCGCGCGTGCGGGGATGGTCCG # Left flank : GACACCCCGACCCTGATCTGCCGCCCACCCGGCTCCCTATAGTCGACCGGCACCTCCAACTCGCCACACTCCTGATCCCGCGGCCCCTGCTCATACCCACACGGCTCCCAGCTGAGCCCCGCCTTGGCACCCGCCTCCGCCCGCGCCCCGGTCCCCCCAACCCCGACAAGCGCGGCGGCCACAGCGGCCCCGGAGAGCGTGAGCGCAAGAGCACGTGCGGTATAGGTCGTCGTCATGCCATGAAGCCTCGCCGCCCTGGGCCCTCCGGCCCATCCGGGGAACCGGTGTGCGGGGGTGGGGGTAGCCCCCGGGGGAACCCTGACAGGGGATATCTCCAAGGAGCCGTGTTCATAGGACAGTTGATGGACACGGGCCGCTTTTCCTCACCCGCCCATCATGCTGCGCCTGGCACCTCTTCACACCGGGAGGCCCCGATGCCCGACTGCTCGCAAGTGAATGAAAACCGCTACTTCGCGATGTGAACGCGCAGGCCAGGAAGG # Right flank : CCACGGGCTTCTGGCCACGGAGGTAGACCTGCTGCCACTCCAGCGAGTTCATCTTCAGCGCTGCTACGGCAAGCTCCTGCGCCGAGGCGGTTTTGAGCTTGGCGAGACTGCTGTCGATCCAGGGCTGAACGTTCTGGCAACCCTGCTCGCGGTACTCGACGGCCTGGATGAGGCATTCGAGCTTGTCCGCGTCATGCGCGACGATCACTTCGAGGGAATCGCCGTTCTCGTACTCGTGAACGACTCGCTGCACGCCCGCACGTACCGCCGGGTGAGCGGCGGACACCTGGTCGGCGGTCACCTTCTCATTCGGCGCGGCCTCCAGATAGCGGCGGCCGATATGAGGGATGTCGCTGACGCGGGTCTCCTGCGTGTCGTGAAACAGGCAGAGAAGAGCCACCTTCGCGGGGTCGGCACCTTCCATCATGGCGAGCACCGCACCGATGACTCCGGTCCGGAAAGAATGCTCGGCGATGGTCTCGGGGTCCTTGACACCAGCG # Questionable array : NO Score: 5.39 # Score Detail : 1:0, 2:3, 3:0, 4:0.62, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.51, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGGCCCCGCGCGTGCGGGGATGGTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCGTGCGGGGTTGGTCCC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //