Array 1 1037605-1038914 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP017976.1 Salmonella enterica subsp. enterica serovar Montevideo str. CDC 2011K-1674 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1037605 29 100.0 32 ............................. GGTCAGGCGATCATATTCGCGTGGATTGACGA 1037666 29 100.0 32 ............................. GTTCAGGTTTCGCGTCATCTGACGTTGGTAAT 1037727 29 100.0 32 ............................. TGTCCGCAATTGAGCGTTTCTCGGCTGATATC 1037788 29 100.0 32 ............................. ATCCGAGTAGCTCAACTGGGGGATATCCCCAA 1037849 29 100.0 32 ............................. GCGGTGCGGCAGGCGTTCCATGCCTCCATAGC 1037910 29 96.6 32 ............................A TGCCATCGCCGAGGGAGGGCCTCCAGATCATC 1037971 29 100.0 32 ............................. CTGAATAATTCGCCGTAGGTAGCCAGCGCAAT 1038032 29 100.0 32 ............................. CCGTCGCTGACGAACTGACTTTTCTTCATCTC 1038093 29 100.0 32 ............................. TTCACCTTTCCCCACAATGTCAGAGGTTATTT 1038154 29 100.0 32 ............................. ACCACTGTCCGCAATCTGTCGGCGAACTACCG 1038215 29 100.0 32 ............................. GAGATCCCCCAGCGTGAATATCTGGGAGTGTC 1038276 29 100.0 33 ............................. GCTGAATTGCTAAATAAAGCGGCCTGCGCTGCC 1038338 29 100.0 32 ............................. ACGATTTATGAAATCCACCCGGTAAAAATGAA 1038399 29 100.0 32 ............................. ACGATTTATGAAATCCACCCGGTAAAAATGAA 1038460 29 100.0 32 ............................. ATGATCCGTGAGGGGGTGGCAACGCACGCGTT 1038521 29 100.0 32 ............................. GGACAGGTAACAGCGTGCTTGGTTCTGGTAAC 1038582 29 100.0 32 ............................. AGTGAGTATCAACTCAACCTTATTGAAGATAT 1038643 29 100.0 32 ............................. AAATAATTGCGCAGTTTTAAATGCCTGAATAT 1038704 29 100.0 32 ............................. TCACAGTCACCGGTGATGACGGCGTCGTCGCT 1038765 29 100.0 32 ............................. CGCAAATGAGCCAGGCGGACAGGCATTTTAAT 1038826 29 100.0 32 ............................. CCATACCATTTCCACTGGCGCAACGATTTTTG 1038887 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 22 29 99.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGCTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCGCGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGCGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCATAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGATGATAAAAAGTGCTTTATAAAGAACGATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGTTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCATGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1093132-1093832 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP017976.1 Salmonella enterica subsp. enterica serovar Montevideo str. CDC 2011K-1674 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1093132 29 100.0 32 ............................. TGTCCAGGCGATTTCCTGGAACCTGGCATTGC 1093193 29 100.0 32 ............................. GTCGCGGTGTGAGCGGAAAGCCTGGCGAACAG 1093254 29 100.0 32 ............................. CGAGCTCGTCAGGGAGGGAAAGGTTATCCGGG 1093315 29 100.0 32 ............................. GTAGGTAGCGCCCAATGGATGTTGGGGGAAAT 1093376 29 100.0 32 ............................. GTTTATCTCTCCGTTATGTGTCGGACACCAAA 1093437 29 100.0 32 ............................. CAAACAGTGCATAATTCGCAAAATTTGCGCTA 1093498 29 100.0 32 ............................. GTTCCACAGGACGTTGAGAACGGCTTTATACA 1093559 29 100.0 32 ............................. ACGAGCACTGCAACGGCGAACTGGCAATGGCA 1093620 29 100.0 32 ............................. GAATTATTTAGTTGATCTGAAGAATTCAGGAA 1093681 29 100.0 32 ............................. AACAGTGCAACCAGAAAGTATTAAAAAACCAA 1093742 29 100.0 32 ............................. CAAAAGGCCGACGGTGTGTACACCTCTAAAAA 1093803 29 93.1 0 A...........T................ | A [1093829] ========== ====== ====== ====== ============================= ================================ ================== 12 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCGCCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCCTTGGGGGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGTGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTCCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCACTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //