Array 1 117341-115244 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP047020.1 Streptomyces broussonetiae strain T44 chromosome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 117340 28 100.0 33 ............................ GCTCTTGCCCGGGGGATGACGGCATGCTCTTGC 117279 28 100.0 33 ............................ CCGGATCGTGTCCCCAGCAGCCATGCCGGCGAG 117218 28 100.0 33 ............................ GTAGTCCCGGCCGCCGTCGGCGCCGCGCTTGAT 117157 28 100.0 33 ............................ GGCCCGCGAGGCGCGCCGTGCCGGCCGCCGCGA 117096 28 100.0 30 ............................ GATCAGGGGGGCGCTGTGGCCGACCCACGT 117038 28 100.0 33 ............................ GGCTGCGAGGACGCCTCGGCGGCCATCCGGCGC 116977 28 100.0 33 ............................ GGCTGCGAGGACGCCTCGGCGGCCATCCGGCGC 116916 28 100.0 33 ............................ TCGTGGTCGCTCTAGTCGACTTGCATGCAACCG 116855 28 100.0 33 ............................ CGCGTCCATCGGTCTGTACGGCGCGCCGCAGAC 116794 28 100.0 33 ............................ CGTCTGCGCCTTCGTCCCAGACGAGTCCGGCGT 116733 28 100.0 33 ............................ CACCCAGCTGTACGACCCGGCGACCAACGCGCG 116672 28 100.0 33 ............................ CACGGTGGCCGGCAGGCAGTTGAGCGAGGAAGA 116611 28 100.0 33 ............................ GGTCTGGCTCAACGGAACGCACGACTACTGGGT 116550 28 100.0 33 ............................ GTCCTCACCGCCGCGCAGGTCGCGCTCCTGATG 116489 28 100.0 33 ............................ CCACATCGCAGCGGCCCCGGCCGCCCCGTACTT 116428 28 96.4 31 ...A........................ CTCACGGTGGGCCGCGGGTTCTGGGGGGGGA 116369 28 100.0 33 ............................ CGCGTGCTCCTCGGCGTGGTAGCACGTGCTCCA 116308 28 100.0 33 ............................ TCAGCTTCATCCGGAGATGGCATCCTTGCCGAG 116247 28 100.0 33 ............................ TTCCTGGTCAGGCGTTGGCGCGCCAGGCCAGGG 116186 28 100.0 33 ............................ GGCCACCGACGGCTGGCTGATCGACTGCATCGT 116125 28 100.0 33 ............................ GTCGTCGTCGGCGAGCCCGGAGGAGAGCCCGAG 116064 28 100.0 33 ............................ TCCAGCGCGGGCACCAGGGGCTGGAAGTCCTGC 116003 28 100.0 33 ............................ CTCGTAGTCCAGCACGTACGCCGCGCTGTCGAG 115942 28 100.0 33 ............................ TTCCCGGCTCCGGAATACATCCGCCGTTCCGCC 115881 28 100.0 33 ............................ CTGCCGCCGTTGTAGTAGGTGCTGCGCTTGGCT 115820 28 100.0 33 ............................ GGCGACTGGGCCACCGGGATCAACGCCTACGCC 115759 28 100.0 33 ............................ CTGATTTCGGGCACGATCACGCCGAGTTCGAAA 115698 28 100.0 33 ............................ ACCCTGTTCCTGTTCTCCAAGAGCCAGCGTTAC 115637 28 100.0 33 ............................ GGGTGAACTCCCGGTGCGTATCGGACCTTTGAT 115576 28 100.0 33 ............................ GTCAGGGGAACCGCCGCCTCCGCGAGCGTGTCT 115515 28 92.9 33 ...........G.A.............. CAGCCGTGCCACCGTCGCCGCCGGGCGCCCCCG 115454 28 92.9 33 ...........G.A.............. GAGGCCTCGGATTCCTTCCTGGAGTCGATGGGG 115393 28 92.9 33 ...........G.A.............. CTCCGGCAGGCCCTGCAGCGCACGCGGGGTGTG 115332 28 92.9 33 ...........G.A.............. CCCCATGCGCTACCGCGACGCCGACTGCACCTG 115271 28 96.4 0 .....................A...... | ========== ====== ====== ====== ============================ ================================= ================== 35 28 99.0 33 GTCGTCCCCGCACCCGCGGGGGTAGCTC # Left flank : CCTATGGGACGAAGGCGAAACCGTCGTCACTGCTGGCTGGAACTGGGGCAACTCCTTTGCCCCGGACCAACACGTTGACGTCATCCCACCGCCACGTGATCAGGAAGAAGGCAGAGACCAGAGGGAAAAGGGATGAGTCCGGGCACCACAGTCGTGATCTTGATCGCAGCACCCCCAGGCCTGCGCGGCCACCTCACCCGCTGGTTTGTCGAAGCAGCCCCTGGCGTCTACGTAGGTACTCCCAACTCACGCATCCGCGACCGTCTGTGGCCCGTACTGGCCCAGCGTATCCGCGACGGACAGGCAGTCATGATCGAACCTGTCCACACCGAGCAGGGCTGGTCTGTACGTACTGCTGGCCGTGATCGTTGGGCTCCCGTCGACTTCGACGGTCTTACCCTGATGGCGCGCCCCGCCAAGTGGGTAGCCACCCCTGGCGCCCCGATTCCGATGTAAACGAAAACCGCCCACCGGCCTGACAACACCGCAGGTCAGCAAGT # Right flank : GTTCATCAAGCACGTTCCGTCCCCGCGCGTGCGGGGAACAGGGGTTCCGGCGCCTCTGCCCTGACGAGGAGATGGGGCCATCGCCCCACGCGCGAGGAGCGCAGTCTTGGGTAGCGCCGAGGCCCGCGCGTGGGCACAGGCCTCATATGGGCAGATCGTCCCGACCTTCAGACGTCACGCATTGACCGGAGGCGGGCGGCGATCTCGTACGAGTTCATCTGCATCGTGCGAATGTCGATGATCAGGTCGCGCCAGGCCTCGAACTTCGTGTTGATCTGCTCCCCGTGCATCCGCAGGTACGCCACCGCTAGGCCGTAGCCGTACAGTTCGTTCCTGGTTGGGAGAGGGCGCAGCAGGACGCACTCCTCCAACATCACCGCGGCCCGCCAGAAGGCGTCAGGGTGGTGCTGGTCGTGGCGGGGCGGGTCCACCTTGTGGCGGGCCGCCACGCCGACGAGGACAGAGAAGTCGTTGACTTCGACGTCGTCGGGAAGGATCTC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCCCCGCACCCGCGGGGGTAGCTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGTCCCCGCACCCGCGGGGGTAGTTC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [30.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 127820-130106 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP047020.1 Streptomyces broussonetiae strain T44 chromosome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 127820 29 96.6 32 ............................T AGCGGTGAGTACGTCGATCACGACCACGGACT 127881 29 96.6 32 ............................C GTGGTCATCCGCGGCGGCACCGTCGTGTCTGG 127942 29 100.0 32 ............................. CAGGTGGCCGCGTGACCCCCACCGCTGACATC 128003 29 100.0 32 ............................. ACGTGCGCACGCAGCTTCTTCACTTCCGCCTG 128064 29 96.6 32 ............................C CACTCGCAGGTGGCCATCGCGACCCACAGCGC 128125 29 100.0 32 ............................. GGCGCAGGACCCCACCCAGGCGCCCCTCCCCG 128186 29 100.0 32 ............................. ATCAAGGGGTATGACATCGGCCTCGGTCAGAT 128247 29 96.6 32 ............................T TGCTGCCGGGTCGTGTCGAGACCGCTGGCCAG 128308 29 100.0 32 ............................. CAGGTGGCCGCGTGACCCCCACCGCTGACATC 128369 29 100.0 32 ............................. ACGCGCGCACGCAGCTTCTTCACTTCCGCCTG 128430 29 96.6 32 ............................C CACTCGCAGGTGGCCATCGCGACCCACAGCGC 128491 29 100.0 32 ............................. GGCGCAGGACCCCACCCAGGCGCCCCTCCCCG 128552 29 100.0 32 ............................. ATCAAGGGGTATGACATCGGCCTCGGTCAGAT 128613 29 96.6 32 ............................T TGCTGCCGGGTCGTGTCGAGACCGCTGGCCAG 128674 29 100.0 32 ............................. CTCGGCCTCTCCGCCCCGACCGTCAAGAGCAT 128735 29 100.0 32 ............................. TCTGCGGGGTGGCTGTCGGGTGGCCGTAGGCT 128796 29 96.6 32 ............................C GCCTACGCGGCTGGCCTCACCCTGTACGACCC 128857 29 96.6 32 ............................C TCCCTACGGCCGGTTTCAGCAGCCTGTCGAAA 128918 29 100.0 32 ............................. TCCCAGCAGCCGGACCTGGTCAAGGACATCAC 128979 29 96.6 32 ............................C TGCTCGGTGAACTCCCGCGCCTTGCCGCGCCG 129040 29 96.6 32 ............................T CGGTGCGCCCGCGTGACAACCGTCGGCACGGG 129101 29 96.6 32 ...............A............. GGTGCGCCCGCCTTGCCGGTACCGGCGCCGCC 129162 29 100.0 32 ............................. CCTTCCGAGAAGTAGCGGCGGGGGTCCTGGTA 129223 29 96.6 32 ............................T GGAGAGCGTCAGGCCGTGTACGGCCATCCGGC 129284 29 100.0 32 ............................. CGTGTCCTGGTAGTCGACTATGACCCGCAAGG 129345 29 100.0 32 ............................. TGGGCGCCCAGGCTCATCACCTCCATTTGCGT 129406 29 100.0 32 ............................. ATGATCACGGCGGTAGCGCACGGCAAGGTCAA 129467 29 100.0 33 ............................. CCGAGGGCGTGGGCTTTGACGGTGACGGAGGAG 129529 29 96.6 32 ............................C CCCGACCTGTACGCCGACGTCACCGACCTGTT 129590 28 96.6 32 .....................-....... GCGTACGAGCACGGGTTGACCCTGTTCGGCAT 129650 29 96.6 33 ............................C TCGGCTGCGGCCGGGGTGGGTCTGACGCTCGCC 129712 29 100.0 32 ............................. AGCAGGGTGTAGCCGGACCAGAGGACACCGAA 129773 29 96.6 32 ............................C GCCGTGGCGAACGGCACCCCCCTCACCGCCCG 129834 29 100.0 32 ............................. AGAGCGGGCTGGCTCATGGCATGACTCCTTGA 129895 29 96.6 32 ............................C ACGACGGCGCGATACCCCACCGTGAGGCAGAG 129956 29 96.6 32 .....................A....... GCCGACCAGGTGGTCGCCGCAGTTGCTGAGCA 130017 29 96.6 32 ............................C TTCAAGAGATGGCGATCGCCTCGCTCGAGGCC 130078 29 96.6 0 ............................C | ========== ====== ====== ====== ============================= ================================= ================== 38 29 98.2 32 GTCGTCCCCGCACCCGCGGGGGTTGCTCG # Left flank : GCAGCCGCCCCCACGTCAGCCCAGCCGCACGCACAGGAGCAGCCTCCGCCACATCCAGCGCCTGAAACGCCGGGCACGCCTTCCCACAGTCGTGGATCGCGCACACCCACATAAACCACGCCCGCCCCTGCCCACCACTGATCTCGTCCAGACGCCGACGAACCGCCGGTGACAGAAACCGGTCCCACATCAGCCCCGCCACAGCCGCCGTGTCCAGGAGGTGCCCGAGCAACACATGGGTCCGCCCAGCATTGCGCGCAGCCGACTTCCCCCACAGCCGCGCCACCCGCGCTACCGTCTCCTCCGACACCTGGCACGACTGCATCAACTCAATGACTGACCGCTCATCTTCCACCTGTGGAGCTCCCTCAGACAGCCTGCCGCGATGCCGACACGCACGATAGAGGGCAGGTCTGACAGTGACTCTCTGAACCCCCCGCCTCCTCATGCATGTGAAGGAAAACAGGCCCGTTCGCTAGCATCGTCCCAGCTCATGAAGT # Right flank : CGACCACAACGGCGTTACCGGTAGTTCGTTAAATCCGGAGGTAGAGGTCAATGCCGTGTCCTGTGGTGACCGCGTCGATCAGCGCCTGGAGTTCGCAGGGTGGGTCGGTGTCCGTCCAGGCTCGCCACCATCGGGTGAGGGTGATGGCGGGGGTGAGCCAGGAGCGGATGGCCCGTAAGGCCCTTGGCCAGCAGGGCGGTTGGGGCTGGAGGGGTATGGCTGGGCCCCCTCTCTGGGCCCTCGTCGGGGCACGGGTCGGGCGCGGTGGCGTCCAGGGGTCCCGGTGGGGCGAACCATTGGTCCCAGCAGAAGGAGAAGGCGCAGTTGACCAGGGTCTGGTGGCGGCGGATAGCGCGGTCGGAGCGGACTTGGAAGTCGGCCCAGCCGAGTTCGTCCTTGATCTGTTTGTAGCTCTGCTCGATCCAGGGCCGCAGTCCGTAGAGGCGGATGATCTCGGCGAGGTCGGCCGGCGGGTGCGGGCTGGTGGTGGCGTGGGGTGC # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCCCCGCACCCGCGGGGGTTGCTCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGTCCCCGCGCCCGCGGGGGTTGCTCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 131680-132075 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP047020.1 Streptomyces broussonetiae strain T44 chromosome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 131680 29 96.6 33 .......T..................... GAGGGGGCCGTGGCCACCACCTCGTCCGTGATG 131742 29 96.6 32 ............................T TCCCAGCCCCGACTCGGGACGCGGCGCGCGCA 131803 29 100.0 32 ............................. GAACGCACGCCCGAGGAGTGGCGCGAACTTCT 131864 29 100.0 32 ............................. CCACGGTTCAGGCCCGCATCAGCGAGCTGCGC 131925 29 96.6 32 ............................G ATCCAGTCCACGATGACGACACAGGCTTGCCC 131986 29 96.6 32 ............................T CGCATGGAGAAGAACGGGCTGCGGTACGCGCC 132047 29 96.6 0 ...........................G. | ========== ====== ====== ====== ============================= ================================= ================== 7 29 97.6 32 GTCGTCCCCGCACCCGCGGGGGTTGCTCC # Left flank : CACTGCCTGCCCACGTGCGCGGTGGCCATGCCGTCCTTGCGGTCCCCGGAATCGTCGATCACGATGACCCCACCACCGTGCGGAGCAGTCGCCGGCTCCTCACGCAGCAGCTCGAGCCGCCGGTCGTTGACCTGCTCGACCTCCCAGGGCGACTCGGACAGGAAGAACTGCAGCCGCTGCACCCCCGGCATCCCCGCACCCGCCACCGGCTCCGCCCCGGCCAGACAGGTGATCGTCTTGTTCCGCTCCCGCGGCACCAGCAGCCCGGTCAGGTACTCGCGAAACCCCCGCCGCTGGGCGAGACTGAAGAAGAGGTCGTCGAACCGGGCCGCGTAGTCCTCCAACGGCCCCGGCGCAGGCGGACACGGACGGCGAGCAGTCATCTTCAGCCCCCCAGCAAGGCAGTTGACTCCTCCCACCGGCCTACGACCAACCCGACCTGACGTCAACCCACACCACCACCGGATTTAACGAACTACCGGTAGGAGGCAACGGAGATG # Right flank : CATGGCCAGTAGAAGCTGGGTTCTGGATCACTTTCCGTGCCAGGGCCACGGAGGGTCACCGGGTCCGCGATCATGAACGGTCGTGAACCACGACCTGCTCCAGGACCTCTGGCTCCACCAGACCACCGACGTCGCGGTCAGCGCCGTCACCATCCACGCCGACCACGTCACCGTCCACGCCGCCACCACCAGGGCGGGCGCGCAGTGTCCGACGTGCGGGACGTCTTCGGGTCGCGTCCACAGCAGCTACGTACGCAGGCTTGACGACAGCGCCGCAGGCCAGCGCCGGGTCGTCGTCGAGTTACGGGTCCGCCGGTTCCGCTGCCGCCAACAAGCCTGCGAGCGGACGACGTTCGTGGAACAAGTCGAGGGCGTCACCTTCCGACACGGGCGACGAAGCCAACAACTCCAAGCCGCGTTGCAGAAGCTCGGGCTGATGCTCGCCGGCCGGGCTGGGTCCCGCCTTGCCGAGGCGTTCGCCGTCCCGGTCAGCCGCTCCA # Questionable array : NO Score: 5.70 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.56, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCCCCGCACCCGCGGGGGTTGCTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGTCCCCGCGCCCGCGGGGGTTGCTCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [45.0-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 3468304-3467124 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP047020.1 Streptomyces broussonetiae strain T44 chromosome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 3468303 29 96.6 32 ........G.................... TTGATCACCGCCGTCGCGCACGGCAAAGTCAA 3468242 29 100.0 32 ............................. GCCCAGGCCCGCAAGCGGCACCGCACCCTCAT 3468181 29 100.0 33 ............................. GCTGACGCGCCATTCAACTGCGTGTCCCTTGTG 3468119 29 96.6 32 .......T..................... TCCGGGATCGCGTGCTCATGGGGCACGTCCTC 3468058 28 96.6 32 .....-....................... TTCGGCAAGGCCGCGCGCATCGCGGAGGAGGA 3467998 29 96.6 32 .............G............... ATGATCTGCTGGGCCCGGGTCCGGGTGAACCC 3467937 29 100.0 32 ............................. TTGACCCAGGCTCCGACACTCGGGTATTCGCT 3467876 29 96.6 32 .............G............... ACTTCTGGCTGGATAGCATCGACTTGTAGACG 3467815 29 96.6 32 ............................A CTCAGCCACCTTCTGCTCGTGGCGCACGCGCT 3467754 29 89.7 20 ................G..........GC AGCGGCGGTGTCGCCCTGCC Deletion [3467706] 3467705 29 89.7 32 A.T....T..................... GCGTATGCCGCCCAGCGGTTCGAGTCCGACGA CG,TAA [3467691,3467697] 3467639 29 100.0 32 ............................. GACGCTTTCGGCAACCCTCTGATCGTTGGCCC 3467578 29 100.0 32 ............................. TGCTCGCGGGCCGCGGCGCTCTTCCCGCTGCC 3467517 29 100.0 32 ............................. TCCATCCAGGACGCGATCGTGGCGCAGTACGG G [3467495] 3467455 29 96.6 32 ......T...................... CCGCAGGCGACGTTCACCGACGCGATCAAGTC 3467394 29 93.1 32 .............G..............T CCGCACTGGTACGCGGCCGGCGCCTGAGAGAT 3467333 29 100.0 32 ............................. ATGGTCGGGCAGCCCACGTCACTGCTGCCGGT 3467272 29 93.1 32 .....T...............A....... CAGACCGCGCTGTAGTTGTCGGAGTCGTAGGC 3467211 29 100.0 30 ............................. TGCTCGCGCGCGGCGGCCGACTTGCCGGAC 3467152 29 82.8 0 CCGTC........................ | ========== ====== ====== ====== ============================= ================================= ================== 20 29 96.2 31 GTCCGCCCCTCACACGAGGGGGTAGCCCG # Left flank : GCAGCCGCCATCGCCGACACCGCAGCCATCCCCCCGCCCCACCGCACCAACGACCTCCACCCCCTCACCTCCACCCTCGACCCCGACCTCGTCTCCACCCGCCTCGGCGCCGACACCGCCACCGTCCTGCCCGTCTACCAGCACGCCGACGGCACCATCCACCTCCACCCCACCCGCCGGACGCCGCTCCCCGCCCACCCCACCCGCGCCCAGACCCGCACACTCATGCGCAACGTCGTCAACCTCCAGGCCCACTGGATGAACGGACGCGGGCCCGACACCAACATCCCCACCACCTGGGCCGATCTGCCCGGCCTGCGCGACCTCGTACTGCTCCCCCACAGCCACGACCCCACCGGCCCGATACCCTGGACCGCCACCGACGGCCGCACCATCCACCTCCACCCAATCGACGGCATCGTCAGAGACTGACCATCCGAACCCCCTGCTCTTTGATAAAAGAATCGCAAAGGCGGCCAAACACAGCAGGTTCAGAAAGT # Right flank : GACGCCTTCGGCAATCTTCTGATCGTAGGCCCGCTACGCGGCCGACTGGAAGCAGTTCACTGAGTGGTGCGCGCGCCGCGGCTTCTCTCCACTGCCTGCAACCCCCGAGACACTGGTCGAGTACTGCACTGCCCTGACGCTCATCCCCAGACCCCGCACTGGCCGGCCGTCCTCCCCCTCCTCGATCGAGCGGGCCCTCGTGGCCATCCAGACCGCTCACCGCGCCGCGGATGTGCCCCCGCCGGAGACCAAGGGGGCAAGGAAGGTGCTCAGCGGCTACCGGGAGCGGCTCGCCCTGGCCAAGGACCCGGCCGCGCTGCCCAAGAAGGCCAGCCCTGCCATCCCGTCGGCCCTGCGCGGAATGCTCGATACCCTGGACCGCTCCACGCTCATCGGGAAGCGGGACGCCGCCCTCCTCGTGCTCGGATACGCGGCTGCCGCCCGCGTCTCGGAGCTGGTGACGCTGGACCTGGAGGATCTGGTGGAGACCGAGGAGGGCA # Questionable array : NO Score: 2.63 # Score Detail : 1:0, 2:0, 3:0, 4:0.81, 5:0, 6:0.25, 7:-0.03, 8:1, 9:0.60, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCGCCCCTCACACGAGGGGGTAGCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-11.00,-11.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.42 Confidence: HIGH] # Array family : NA // Array 5 3473112-3473627 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP047020.1 Streptomyces broussonetiae strain T44 chromosome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 3473112 29 96.6 32 .............A............... GTCGGCGGCCCGCGCAACGCTGCGATCATCGG 3473173 29 96.6 32 .............A............... CAGCCCGACGAGAAATCGGCCCAGGGACGCAT 3473234 29 100.0 32 ............................. CTGAACGTTCAGCAGGCCGAACTCGCGGTCAA 3473295 29 100.0 32 ............................. GTGGACAACGTCGTTGTTTTCTCCGACTGGGC 3473356 29 93.1 32 ...........G.A............... AACCTGGGCGAGTGCCCCGTCAAGCAGGGAAT 3473417 29 96.6 32 ...T......................... ACGAAACTTCAGGGCCTGGTTGTGCATAACGC 3473478 29 100.0 31 ............................. CCGTCCGCCGTCTGGAGGACGACTTCGGGCA 3473538 29 96.6 32 T............................ CAGTACAAGTTCACCCCGCCGCGGGTGGGCGG G [3473554] 3473600 28 89.7 0 .............A.......T..-.... | ========== ====== ====== ====== ============================= ================================ ================== 9 29 96.6 32 CTCCGCCCCTCACGCGAGGGGGTAGCCCG # Left flank : GACGTCGCCGACCGGCTGCGCCTTCGCTCCTACGGCATCCACCAGGACAAGCAGGACACCAACACAGCCTGGACCCAATCGGTCACCCCGCCGGTCCTCGGCCACCTGGAAGAACGTGACCCCGACGGCGCCGCCGCCATCAGCGCAGCCCGCGCCCAAGCCGAAGCAGTCGCCTCCGGACTGGGACGCGCCCTCCGCCAAGCATGGGCCTCCTACGCCTCCGGCAGCAGCACCTGCCCCTGGACCGAGACCGCCACAACCGAGTACTGGACCGAATCCGAGGCCGAGTTCTGGGCCGTCGTCACCGCCGCAGGCGCCGACCGCCCCCGACCCCGATTCCAGGCCATCGCCACCACCATCTACGACCGCACCACCGCCGAGGCTAGTCACACCGCCCGCGGCATGAGCGCCATCGAAACTGCCCGCGCCACCATGCTCCGCCCACCCAGAAAAACTGCAAAGAAAACGAAAGCCCCCTGAAAACGCCCAGGTCACGAAGC # Right flank : GAGGCAGCCCGCCGTTCGTGGCAGGCGCTGCGCAACGTAGCCCCGTCCGCTCACCAACGTGGGAGCCCTGTCCCCTGCCTAACTATGGAGAATCGATGCCCAGTGAGTCCCCGCCTGCCCAGGTTGATGGTCTGGAGCCGTTCCGTTCCTACATGTCCCACGTGGCTGAGCGGTGCGGTTCGCCGCAGGGCCGCGCGGCGATTCGATCCGCGCTGGTGGATCTCGACCGGCCATACCGGGCCTACGAGCACTTGCTGTCCCGAATCCCCGTGACGGCGTCCCGGGAGAGCGAGAGAGCGTACATCCTGACCGCCGCGATGTACGCGCAGCAGGCCCCGAACCCGCGCCTCGGCGCTGCGGCTACTCCTGCCGAGCCCCAGACGGATCCAGACGACCGCTGGCGCAACCTCGGATGGTCACTCGCGCGGGCGGTCAGCGCCCAGGTGCTGCGGAAGGAGACCGCGCAGGACCGTCTCGCGCTACTGGCCCGCCAGGACTTC # Questionable array : NO Score: 2.68 # Score Detail : 1:0, 2:0, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.59, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCCGCCCCTCACGCGAGGGGGTAGCCCG # Alternate repeat : CTCCGCCCCTCACACGAGGGGGTAGCCCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-11.70,-11.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0 Confidence: HIGH] # Array family : NA //