Array 1 2800803-2800535 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP028384.1 Providencia heimbachae strain 99101 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 2800802 28 100.0 32 ............................ TCGAACGTTCTATCGAATGCCTTTGTACGTTC 2800742 28 100.0 32 ............................ CATGCAATCAATGCAACATATTGCTGTAGCAT 2800682 28 100.0 32 ............................ ATAGGATTAATATAACCAACAGGCTCCAAGTT 2800622 28 100.0 32 ............................ TTCATGCGCCGTATTGACCACATTAACGCCCA 2800562 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 5 28 100.0 32 GTTCACTGCCACACAGGCAGCTTAGAAA # Left flank : TATTAAATCTATACAAGCGGTACCTGAGAATACGGTGCCTGTGAGTTATATACGGCAGCAAGTTAAAGGTGAAAGGCGTATTGAAGCGGATATGCAGAAGAAAGCGCAGTTATGGGCGAAGAAATCGGGGCAATCGTTAGAAAAATGTTTGGCGATATTAGCTCAAAATAAGCCAAGTGCAGACAACCGCTTACCTTTTATTTGGGTTGAAAGCTTACACGCTAAAGATGAAGATAGTGGGCATCGTCCATTTCCTTTATTTATTAAAAAGATAGCGGCGCAGCATGCACAAGTTGGCGCATTTAATTGCTATGGGTTAAGCCAAGCTTCAGATAATGGCCAATCCATCGCCACGGTTCCACATTTTTAACCTTTATTTTTTGCTCTTTAAAAATAAAGTAATAAAACAATGAGTTACAATAAGCAGTAAAATAAAGGGTATTTTTTGCAAAATAACCTTAACTGTTTGTTGTAACTTGTTTTTTCTTTGATACTTTATA # Right flank : AGGTTTCATCGCAGTGGGGTGAAATTGACAGGCTGCAATCTTTAGTCGCAAGGCGCGATTTTTTGTTGCGTACCTTTTATGGCGTGATATTATAATCAAACCTGTAAGTAATCTCATGCAAAGATATTTGAGATACCTTCAGGTACGACGCGCAAAAATAGAAATGAAGTCGCGTTTCTAATTAAGAATACGGGTTTCAATAAGTATTCTTACAGTAAATCAAAGTAAGTAGGTAAATATATATGGCTATTTCCGTAAGATTAGACGAAGACTTTGTATCTGATGCTAGAGTTCATGCGGAGGCAAAAAGCAGAAGTGTTCCTAAACAAATTGAACACTGGGCTAAAATTGGGCGAATAGCTGAAGATAACCCTGACCTGTCATATGGCTTTATTAAAGAACTTTTACTGGCTCAGGCGGAAGTCGAAAACAATAAGGTTTCTCGATATGTCCGAACTACAAAAAGAGATTGATGTTTATCAAACAGCTAGATTTAACAA # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCACACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,9] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCACACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.40,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [50.0-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 2810718-2809550 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP028384.1 Providencia heimbachae strain 99101 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 2810717 28 96.4 32 ................A........... TGATTTGCGTGGTGAGTTTCTCCGTGGGCTTG 2810657 28 100.0 32 ............................ GGTATGAAAAATGACCGCGGAGAAAGTAACAT 2810597 28 100.0 32 ............................ TGCCTAGGGAAATCAACAGTGACATTGACTGC 2810537 28 100.0 32 ............................ GTTAGGATGGTCATGGACGGTGGAATTGAAGG 2810477 28 100.0 32 ............................ AAAAGATGCGTCCATCACAGGCGATGGCTGCA 2810417 28 100.0 32 ............................ AGTATATGAATGAAAAGATGGAAACATTGAAT 2810357 28 100.0 32 ............................ CTTACAAGGGGAAAAGTAGTGAATACCTGCAA 2810297 28 100.0 32 ............................ TCCTTATTGTTCATTAGGAGAGTATACATAAA 2810237 28 100.0 32 ............................ TCAATCAATTAACCCATGAGTACGCAATGTAT 2810177 28 100.0 32 ............................ TTCGATTGTAGAAACTTGATTTCCTCGGGTAT 2810117 28 100.0 32 ............................ AACGAAAAATAATCGTTTAATTGACGTGAAAA 2810057 28 100.0 32 ............................ GCTAATATGTCCAACTCGCATATTGAGTGTGA 2809997 28 100.0 32 ............................ TAAAAATGTATGTGATGGTAATTCGTTCTTAC 2809937 28 100.0 32 ............................ AATAATGGACGCTGGCGACACACCAAAGATAG 2809877 28 100.0 32 ............................ TACAGTCCAGAGCGGTACATCATTAACACTGG 2809817 28 100.0 32 ............................ GCTCAGGCGCTTGGATCACCTACCCAACACTT 2809757 28 100.0 32 ............................ ATTATAATTCCACGGCGCGGGACTATGCTTAA 2809697 28 100.0 32 ............................ ATGTCAGATGGGTACACATTTCCACCGTCTGC 2809637 28 100.0 32 ............................ TCAAGGTATTGGTGCTCAGCCATCGGGGGATT 2809577 28 92.9 0 ..........A..C.............. | ========== ====== ====== ====== ============================ ================================ ================== 20 28 99.5 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : ATATTGAAGCAAAACAAGGTCTCCAGTTACAAGAAATCGATAAGTTAGATTTTTTGGCAGACACACGCACTATTCAAAACGAACAGCGCAAAAGTGAGTTGTTAAGTACTAACTGGACGGGCACCACCACGGATTATTATAAAGAAAAAGCGATGTTTGAAGCTTCGCAAAGTATTTTTAAAGATTTAAATAGCATGTCGTTATTCGGCGGTCGCTAGTTAAATTCGCCGTATCTAGAGAAGCAGTGGCATGATTATCTAGGTGCGGTTATTTTCATTTAAATTCTCCCTTTCTTATTTTCTAATCTTATCTCGTTCCAACCTTTCATTTTGTGCTAGCTTATGACCAACATGTTTTATCCTTATTTTACCCCTTTATTTTTGCTCTTTAAAAATAACAATATAAAACAATGCATTATGATTATCCCTAAAATATAAGGTATTTAATCATTTTCAGCGCTAATCCCCTGTTGTTATTCGCTTTGTATCTGATATTTTATA # Right flank : CAGATGTTAGCTGTTTAGTAACAATATTCGCGATTGTTTAATATATTAAATGTTGATAGTTAAAATAAATACAACTGATTAGCTATCTCAATTAAAAGCTTTGTGAAATGCTTCGCAAATTGGACTTTAGTATCTATTTTAGGGTTGTATATGTAGACACACTACATTCTAATCATTCAAATAACTTATTAATTTAGTGGGATGGAATAGAAAACATGGATGATTTTTCACCTTCTAATTTAAAAACAATCTTACATTCTAAACGCGCCAATATGTATTACTTTGAACATTGCCGTGTTATGCAAAAAGATGGTCGGGTACTTTATTTTACTGAAGTAAAAAACGAAAATCTCTATTTCAATATCCCCATTGCCAATACAACTGTTTTACTCTTAGGCACAGGTACATCAGTTACTCAGGCTGCTGTGCGAATGCTATCGCAAGCAGGGGTATTAGTTGGTTTTTGTGGTGGGAGTGGAACGCCGTTTTATATGTCCACC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //