Array 1 21333-22687 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABAKR010000022.1 Neisseria meningitidis strain 106099 NODE_22_length_39448_cov_36.845031, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 21333 36 94.4 30 ........G...A....................... TTTTTGTATCCATTCCCAGCCGGAAATTAA 21399 36 100.0 30 .................................... CTTCTGCCTTTTTACAAGCTCGCTTTCTTT 21465 36 100.0 30 .................................... TTTGGTAAAGGTTTCTGTTGCGACCCGAAT 21531 36 100.0 30 .................................... CTTTAACTTTGACCGTGTGCAATCCAGTTA 21597 36 100.0 30 .................................... AACGGCAACCCACTAAATTTTGCAAATGCG 21663 36 100.0 30 .................................... AGTATTCGTCGATGATGGAAACTCGAGCAT 21729 36 100.0 30 .................................... ATGATGCAGGCTGCTCCGTCATCGTCTGCA 21795 36 100.0 30 .................................... CCAAATAGAAATACATACGCCGAGTAATTA 21861 36 100.0 30 .................................... TACCCACGGCGGAAACCATTGCCACAAAAC 21927 36 100.0 30 .................................... TTAAAATAATAACCCAATACACGATGTTAA 21993 36 100.0 30 .................................... TCCTGCCAATTATCATACATAAGATTTTGC 22059 36 100.0 30 .................................... TTGCGTCTATGGTGTCCTTTGAGATGTCCA 22125 36 100.0 30 .................................... AAAACCAACCGGGTATTCATACACAGCCAA 22191 36 100.0 30 .................................... CCGTTGATGACGGATGTGTCGGGTTGCGGA 22257 36 100.0 29 .................................... TCGGCCGCTTTATTTCTGCCATATCGACG 22322 36 100.0 30 .................................... CCTATGCCTGTTATTGTTTTCAGCCTTTTG 22388 36 100.0 30 .................................... TTTAAAACCGCAAACCAGTTTGTATCCTAT 22454 36 100.0 30 .................................... AATAACAACCATTTTGTTATTTCGATTTTT 22520 36 100.0 30 .................................... TCCCGACATTGACGGAAAAACCCGAAAGCA 22586 36 100.0 30 .................................... TTATGCCGTTTTCATCCGGCTTGAACATTT 22652 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 21 36 99.7 30 GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Left flank : GGAAACGGTCGATGTGTCTGGCAATCATGGCTTGGGCGGTTTGTTGAAAGAAGGTGCTCATGAGAAATCCCCTAAATGTCTTGGTGGGAATTTAGGGGATTTTGGGGAATTTTGCAAAGGTCTCATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGGTTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCTG # Right flank : TACTTCGACGGGAAATCCTTATTTCATAAGGGTTTCCCGTTTTATTTGTTATGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACACAGTCTGTTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGTTGCAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATTGGTATTCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACGCCGGCTTGAAATGACGAAATCATTTTGTCGATGGCAGCCAAGGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.40,-0.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.68 Confidence: HIGH] # Array family : NA //