Array 1 51172-52357 **** Predicted by CRISPRDetect 2.4 *** >NZ_MODF01000096.1 Salmonella enterica subsp. enterica serovar Newport strain R8_4007_R1 NODE_8_length_178537_cov_1.31879_ID_19, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 51172 29 100.0 32 ............................. TGCTGGCGGCAAAAGAACTCGCTAAATGGGAA 51233 29 100.0 32 ............................. CAGTGCGGCAGCGCGCAATCGAGACACGCCAT 51294 29 100.0 32 ............................. CACAAAACGCCAGTGGCATGGTACAACCCGTA 51355 29 100.0 32 ............................. GCGTGACCATGTTTAACTCTAAATCAGGCCGT 51416 29 96.6 32 ........A.................... TCATGCTTTCGACTAAATACTACCGCGACAAC 51477 29 100.0 32 ............................. AAAATAACAACATTATCAGTGTGAAAAGTCTC 51538 29 100.0 32 ............................. AGATATGAAAAACGTAAAAATTTACACCGCCA 51599 29 100.0 32 ............................. CAATAGGACAGCCATTCGAGCGCCCAGAGTTT 51660 29 100.0 32 ............................. GTCAGTATGCACTGCTTGATAAAGTCAGGCCA 51721 29 100.0 32 ............................. AACTAACGTCTATAGCTAAATGTAGAGAAAAC 51782 29 100.0 32 ............................. CAGTTTGGAGTCAATGTTATTTCTTCAGGTCA 51843 29 100.0 32 ............................. TCTCGCTGGTTGCTCCAACTCCTGATATGCCG 51904 29 100.0 32 ............................. TAAAAATCTTCTTTCATATAACCGTAAGGGTT 51965 29 100.0 32 ............................. AGGGTTTTGTCACCTCAACGGTCGGGAGTGCA 52026 29 100.0 32 ............................. GTGCAACAGTTTCTTACCGCAAGCAGTTTGAA 52087 29 100.0 32 ............................. ATCATCGGGATTCATTTTGTTGTCCGGGTGGC 52148 29 100.0 32 ............................. CGGTGCTCTATGTCTAAAAATAAAAGCGGTTC 52209 29 93.1 32 ........T...................C AGCACAATCATTATTAGATGAACTTTCATCAA 52270 28 96.6 32 ............-................ GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT 52330 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 20 29 98.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTAATGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGCCCCCTGCCGATTGG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 69027-70642 **** Predicted by CRISPRDetect 2.4 *** >NZ_MODF01000096.1 Salmonella enterica subsp. enterica serovar Newport strain R8_4007_R1 NODE_8_length_178537_cov_1.31879_ID_19, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 69027 29 100.0 32 ............................. CTGGAACGGCAGTATTTAAAAGGGGTTATTGA 69088 29 100.0 32 ............................. TGGGCGCCCGGATTGTTTGCGTGCGGCGACGG 69149 29 100.0 32 ............................. TTGATTTACCCGCCACTTATTCCCCATTGCAT 69210 29 96.6 32 ..........................T.. GGACTATCAAACCATCTATGATGCCAATTTTA 69271 29 100.0 32 ............................. CGCGGGGCTGGTATTCGATACAGACCCGGCTA 69332 29 100.0 32 ............................. GGAATAAAAATGAATTTGAGTCAACTCTATAA 69393 29 100.0 32 ............................. CGTTAGGCTGCGGTTGGGCACCGAAGAAAAAA 69454 29 100.0 32 ............................. ATTATCCCGGAAATCGTGATCAACTACGCAGG 69515 29 100.0 32 ............................. ATTGTTATTGCGGTAACGGATAATTTATCATT 69576 29 100.0 32 ............................. CCTGGCGATCGCATTTGGGTGCGGGAAACATT 69637 29 100.0 32 ............................. CCGAATATGGTGATAATGTTGCACCTTCGCTC 69698 29 100.0 32 ............................. GACTCGGCCTGTTTTTTGATTTTGACAATCAG 69759 29 100.0 32 ............................. CCAATAACCGACGAGGGCAAACGCCGTGCGCG 69820 29 100.0 32 ............................. AGGACTGAGGGAATAGGGACCGTAATTGTAAA 69881 29 100.0 32 ............................. ACAATGTTGCGTCTAATTCTCATTAATTAAAA 69942 29 100.0 32 ............................. CAGACGAAAATCAGCCCGCATATTCCGACACA 70003 29 100.0 32 ............................. AACAGTGGTTTTAGGTTGTCGGTGCTGATCCC 70064 29 100.0 32 ............................. ATTAAACAACAGGATTTTGCAATTACTGTTGG 70125 29 100.0 32 ............................. CAGACGGCAGCAGCGTGAAACACGTCAGTATT 70186 29 100.0 32 ............................. TCAGCTGTTCCATACTCACCCCCTGTGCAATC 70247 29 100.0 32 ............................. GCGATGTATGCCGCGACGATCGAGAGCGAACT 70308 29 100.0 32 ............................. CAGCAGATGAAAAATATTTACAGATTGGTAAA 70369 29 100.0 32 ............................. AAAAAATCCCGCTGACAATATTTTGCCACCTC 70430 29 100.0 32 ............................. CCGGAAAACTATCTCTATCGCAGGCTGGATAT 70491 29 100.0 32 ............................. TTCCAAAGGTACTCCCATATCTCCAGCCAACG 70552 29 100.0 32 ............................. TAAGTTACGCCAGTGCGGGCGTGTTGCTCATC 70613 29 100.0 0 ............................. | A [70640] ========== ====== ====== ====== ============================= ================================ ================== 27 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGTCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGG # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //