Array 1 50036-49457 **** Predicted by CRISPRDetect 2.4 *** >NZ_MUKS01000019.1 Chromobacterium violaceum strain 16-454 19, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 50035 29 89.7 33 A.............T.............A GATGGGCTGGAAGAGCTTCGCCGCGGCGATCCT 49973 29 96.6 32 ..............T.............. CATGTAAAGGGTCATGTGACATCAACCCACTC 49912 29 96.6 32 ..............T.............. GCTGCGATCCGCTCCTCGGCAGTCGCGCTGTC 49851 29 100.0 32 ............................. GCGCTGGCGCACGCGGCAAGCAAAAAGGCGTC 49790 29 96.6 32 .....A....................... GGCAGCCGATGAATACGGCGGAAAACCTTGAG 49729 29 96.6 32 ............................A AGTAATTCCTTGTTGCGATTGTGTTGCGTTGG 49668 29 100.0 32 ............................. GCATGGGCCGAAAATACGCGCATATCGCAGCA 49607 29 100.0 32 ............................. ACACGTCCCAGCGGCCAACGTGTGCGCGCGAC 49546 29 93.1 32 ...........A..T.............. GTTCACAAGAAAAGCATCGAGGACGACAAGAC 49485 29 82.8 0 ....................A...TG.TC | ========== ====== ====== ====== ============================= ================================= ================== 10 29 95.2 32 GTGTTCCCCACGCCCGTGGGGATGAACCG # Left flank : CCTGCTGGCGCAATGGCTGTACAACGTGCCGCCGCTGTTCCACCTGTCCGCCGCCAGCCTCAAGGCCCGCCTGCCGCAGCTGCAATGCGCCGACCGCGCCTTCCGCCCCTTGCACGAGCAACTGGCCACCCAGGCGCTCACCGGCTTTGCCTGGTTGAACGCCGAGCATACGCTGCAGCAAACCCGCTTTGCCGACGGCAGCCGGCTTACCGCCAACTTCGGCCCCGCGCCGGTCCGCTACGATAAGCAAACCCTGCCGCCGCAAAGCCTGCTGGCCGAGCTGGCCGGCCAGCCGCCCAGGCTGCTGCCAGTGGCGGATTGCGTCGACAAGTAAGCGGCGGCGATAATGCTGATGTCGTTTTGCCGGTCATGGCGCGGCGGTTTGCCATGGCCGGCGAGCGGCATTGCCGAGCGATCGAGATGGTGATTTTTTGAGCGGAAAAATCGGTAGATTTTCAGGGTGGGTTTTTATCTTTAGAAATCAGTATCTTGAGATTGGT # Right flank : CTGCCCGTATATCGCTTGCTTAATCCGCGGCCGTCGCGCTGCCCGATGCGCTTGCGATCGACGCGCCGCGGCTTGCCGTCCGAGGAGGGCGCTTCCTATGCTGCAAGAATCGATGTCAGAGGAATCGCCATGCAGCAGTTAAGAGTGAGTGTTCTGGTTGCCGCGCTGTTTCTCGTCGTCGCCGTGGTGTCCAAGACGCTGGCCAGCTCCGTCACGGAGACCGTGCCGGTGTGGCTGGGCAGCGGGGTGACTTTTTCCGCGTTGCTGATTTCTCCGCGTTGGCGCTGGCCGGCCATTCTCGCCGGCGTGTGGCTGGCGTCGGCGATATGGGGGATGTCCGCGCATGGCCTGGGGCTGGCCGGCGCGGCGGCGTTCGCGGGGATAGAGGTGGTCAGCGGAGCCGTTGGCTGCTGGGTGGCCGGACTGGGGCGCAACGATCCGGATTCCCCGATCGGCATGGCCTTGCTTCTTTGCGGCGCGGCGCTGGCGTCCTGCCTGGG # Questionable array : NO Score: 5.53 # Score Detail : 1:0, 2:3, 3:0, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.51, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACGCCCGTGGGGATGAACCG # Alternate repeat : GTGTTCCCCACGCCTGTGGGGATGAACC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCACGCCCGTGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 57704-57309 **** Predicted by CRISPRDetect 2.4 *** >NZ_MUKS01000019.1 Chromobacterium violaceum strain 16-454 19, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 57703 29 100.0 32 ............................. GCGATCCCCTGCCGAGAGGCGGGCAAGATCGA 57642 29 100.0 32 ............................. CATAGGAACCCATCCATTCCGCTAGCGCGCCG 57581 29 100.0 32 ............................. ACCAACCCATCTGGGTCGGGTTATGTCTTTGG 57520 29 100.0 32 ............................. CATCTGGAGCTCAAGGGCAAAGAAGACGCCAA 57459 29 100.0 32 ............................. GGCCAGGGTACATATTGTCCCGCTTTCACGGC 57398 29 93.1 32 .........................G..A AAGCCAGTGCCTCAAGGCTTGAGGGTTCGAGA 57337 29 69.0 0 A.A.........GTT..........TTGA | ========== ====== ====== ====== ============================= ================================ ================== 7 29 94.6 32 GTGTTCCCCACGCACGTGGGGATGAACCG # Left flank : AGCGCGGTGATGGAGGAAGTAGCGGTTGCAATGACTTCCAGAGCTTCTGACTGACGACTTTCCGTTTCATCTTCGCCAAGTGCGGGCATACGTATCCGGCATCAAGAGGTTTTGTTAGCGGGTCTAAGCCTTGCTGTTGCGGAAGCTTGGCGTTCAGCATCAGGGGCGAGCGGTGTCGAACCCTTGTGCAAGGGACGATTGGCCAAGGCCTGGCCGGGTTTGCCGTGCTGATTTGAACGCCGCTTCATGGCTGGTAAAATCGGTAGAATTTTAGATCGGGTTTTTGTCTTTAAAAATCAGCAGCTTGAAAATGG # Right flank : CGGGGGACGGCTGGAGTGGTGTCGCGGCGCTGCCAGTCCGGCCGCGTCCGGCAAAAAAAAAAGCGCCCCGTGGGGCGCTTTTTTTTGCACAACGAGTAAGAAGGCTTAGGCGCGCTTCTTGAATTCGTTGGTGCGGGTGTCGATTTCGATCTTTTCGCCGGTGTTGACGAAGGCCGGAACCTGAACTTCGAAGGTGGTGCCTACCAGGCGGGCCGGCTTCAGCACTTTGCCCGAGGTGTCGCCGCGCACGGCCGGCTCGGTGTATTCCACTTCGCGGATCACGGTGGTCGGCAGTTCCACGGAGATGGCCTTGCCGTCGTAGAAGGTTACCTGGCACACGTCTTCCATGCCGTCGACGATGTAGTTGATGGTGTCGCCCAGGTTGTCGGCTTCCACTTCGTACTGGTTGAATTCGGTGTCCATGAACACGTACATCGGGTCGGCGAAGTAGGAGTAGGTGCAGTCCTTGCGATCCAGCACCACCACGTCGAACTTGTCGT # Questionable array : NO Score: 5.99 # Score Detail : 1:0, 2:3, 3:0, 4:0.73, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACGCACGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCACGCCCGTGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [30.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //