Array 1 4512423-4512286 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB913032.1 Amycolatopsis alba DSM 44262 scaffold1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= =============================== ================== 4512422 25 96.0 31 ....T.................... AGTCGAAACGGGGCCCAGCAGAGCGCGGCGG 4512366 25 96.0 31 .A....................... CATCGAAACGACCCCAGCCAGGGCACGACCG 4512310 25 100.0 0 ......................... | ========== ====== ====== ====== ========================= =============================== ================== 3 25 97.3 32 CGCCAGATCGCGATTAGCCCGCGAA # Left flank : CCGGACGGCATCAGCGTCGACCCGGCGAAACTCGGCTTGGCGGGGCACTCGACGGGCGGCGGTTCGGCGGTGTTGGCCGCCGCGCAGGCGGCCGAGAACGACGACCGGCCGCAGATTCGCGCCGTCGCGACCATCACCCCCGCGCAGACGCTGCCGCCGGCGACGGTGTCGGCCCGGTCGGTGACCGTGCCCGGCCTGCATCTCGCGGCTGGCGAAGACCTCGTCGCGCCGCCTGTCGGGCACGCCGAGGCCATCGCGGACGCGTGGGGCGGGCCGGTCCAGCTGCGGACGCTCGGGAAGTCTTCGCACCTCGGCGTCACCGAGGGCAGGCACTGGAGCCAGCTGCTGCTGCACGGGAAGCCGCACCGCGGGACCCAGCAGCTGACGAGGGCGCTGTTCACCGCGTTCTTCCTCACGCACCTGACGGGGACGACGAAGTACCAGCCCCTGCTGGACGCCGACGTCAAGCGCGCCCCGATCGAGGTCCAGGACGAACCCGC # Right flank : AGTCGAGACGGGGGCCGGGCAGCAAGAAGGGCCCGGCTCTGGTGAGCCGGGCCCTGAAGTGCGGTGAAGCGGTCAGTCGACCATCCACGAGTTGTTCGAGAAGTCGTCGTCGTCGAAGCCCTTGTCGCGAGCGTGACGACCCCGACGACGCGCGGGCGTGCCGGGCGCTTCGGGTGCTCCGGCGCTCGGAGCGGCGGTGGGCGCTGGCGCAGCCGGCGGGACGTCCACGGTCGCGGGCACTCCCGGCGCGACCGGAAGAGGCGGCGGCGGAGGCATCGGCCGCGAAGTGTCGGTCCCCTGACGGGCACCGAATTCGGCGAACCGGGCGTCCGGCTTGTCGTCGTCCTCGATGTCGAAGCCGATCATGTGGCTGCGGTCGGCGGTCGTCTTGCCGGTCAGCCAGCCACCCGCCTCCTTGCTCCGCTTCCCCAGTTCCTGCATGTGGGCGGCGTACTTGTCGTGGACGGCGGCGTCCTTTTGCATGGTCTCCACCGCCTGGG # Questionable array : NO Score: 2.53 # Score Detail : 1:0, 2:0, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CGCCAGATCGCGATTAGCCCGCGAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.70,-1.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [28.3-26.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,0.74 Confidence: LOW] # Array family : NA // Array 2 7787302-7786455 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB913032.1 Amycolatopsis alba DSM 44262 scaffold1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 7787301 37 100.0 36 ..................................... AGCATCTCGACGGTCTGCTTCAGCGTGGCGGACCGC 7787228 37 100.0 37 ..................................... TCGAAGGTGTCGACGACGGTCACCGCACCGGCGCTGT 7787154 37 100.0 36 ..................................... GCCCTGCTGCTGACCGGACTGCGCGAACTGGGACGC 7787081 37 100.0 36 ..................................... CCAGAATGGGACCGTGGGCCGATTTCCTTACCTGCA 7787008 37 100.0 35 ..................................... GCCACCGTGTCCGAACTCAACTCGCAGCGCAGGAA 7786936 37 100.0 36 ..................................... CCGAGCGGGCATGGGATCGCGATGGACGCTCGGCAG 7786863 37 97.3 37 ..............T...................... CGAGCCGAACGCTGAACAGTCCGCTTCGTCAGCTGGG 7786789 37 97.3 37 ..............T...................... ACCTGGAGCCGGTCCCAGTAGCGGCCCGAGGCGACCT 7786715 37 94.6 36 ........A.....T...................... TTCCCGGTGGGCAGCGAGCGCACGTCCGAGACCAAG 7786642 37 94.6 39 ..............T..............G....... CACGGGATCCGCGGGTAGCCGCCGGCGGCGGACACGACG 7786566 37 97.3 38 ..............T...................... CGGGAATGGAGGTGGTGCCCGCCCCGCGGCGGTTTCAA 7786491 37 70.3 0 ...........T........T...G.T..GG.CGGTG | ========== ====== ====== ====== ===================================== ======================================= ================== 12 37 95.9 37 GTGGCATCGGCCCTCCGGGGCCGATGAGGATCGCAAC # Left flank : CTGCTCCCCAACGTGCAGGCTCGGCTGCTCGCACGGAACCTGAGAGCAGATCAGCCTGTATACCAACCGTGGATCGCGAGCTGACGTGGAACTGTTGATCACCTACGACGTCGAAACCACCACACCCGCTGGACGCAGGCGACTACGTCACGTCGCGCAAGCCTGCGAAACCTACGGAGTCCGGGTGCAGAAGTCGGTGTTCGAGATCGTGATGAGCGAGGCACAGCTGCTGCTCCTGCGCCACCGTCTCCTCGACATCATTCACCCCCGCTTCGACAGCATCCGTGTCTACCGCCTCCCCGCCGGATCCTTCGCCAACGCCGCCCATCTCGGACACTCGCCGCCGGCGGGTCACGACACCCCACTCATCTTCTGACACAAGGTGAGAGCAGGAAGCGTGGCCAGACACGCCAGCAGGTTCCGAAGCGAAACCCGGGCGTGTCGATAACAGCAAAGGCACCATGAACCACTGGAATGACAGAATTCCCAGCTTGAGCAGG # Right flank : GGAGTCGCTTCCGGGTGGCCACGGCCGGACTACGGCCGTGGCCACCTCATTGCCTCATTACTCGGCGGCTACCGCATCGTGGTGCTAGTCGAGCGTGACGGCGAGGTAGTCGGTGAGCCAGCCGGTGAAGGTCTTGCTGCCGTCGAGTTTCTTGGTGGCGTAGCCGGTGTGGGCGGCTTGGCCGAGCAGTGCGGCGGTGAGTGGTGCGGCGTAGGGCGGGGCGGCGTTGCAGACCGGGTCGAAGTCGGTGCACAGCCCGATCACGACCTTGGTGGTGTCGCCGAAGCCGGCGCGGGCTCCGGCGGCGCCGATGCTGGGGAAGGAGGTGCCGAGGGTGTTGTCGCCGGGGTTGCGGGCCGGGTCGGCGAGCAGCGCGACCGCGCTGAGCCGCCGCGCGGGGATGGGGCTGGATTCCTTGCCGATGGTGGCGGCCAGGTCACCGGCGATGTGCGCGCCCTGGGAGTACCCGAGCAGCGCGAATGTGCTCGTCGGGCAGGCGG # Questionable array : NO Score: 2.94 # Score Detail : 1:0, 2:0, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.88, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGCATCGGCCCTCCGGGGCCGATGAGGATCGCAAC # Alternate repeat : GTGGCATCGGCCCTTCGGGGCCGATGAGGATCGCAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-14.70,-16.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [16-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.42 Confidence: HIGH] # Array family : NA // Array 3 7795546-7796328 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB913032.1 Amycolatopsis alba DSM 44262 scaffold1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 7795546 37 100.0 40 ..................................... ACCAGGCCTGCCCTGCCCGCGACACGTGCGGCCCCGGAGA 7795623 37 100.0 37 ..................................... GGCGATGTCCCCTCGCCAGTAGGCGTTGATTGCCTCA 7795697 37 100.0 37 ..................................... ACCGGGTGCTCGCGCATGGTGCGGGCGTAGAGGATGG 7795771 37 100.0 38 ..................................... CTGGAGGTGCTGCTCACTGGAGCGGGGTTCCACCTGCG 7795846 37 100.0 38 ..................................... AGGAAAACTGAAGGTCTGTCAGCGGGAACCCAAGGGTG 7795921 37 100.0 38 ..................................... ACCGACAGCCTCGGCAACGTCCTTGAAGCCAGCGGCGG 7795996 37 100.0 37 ..................................... CCGCGCTGACTGGCGAGAACCACGTCACCTCCTCCAG 7796070 37 100.0 37 ..................................... GTCGCTCAGCACCTCGAAGTGACGCCCGTCCCGCGTG 7796144 37 97.3 35 ......................A.............. TCGCCGCTGTTCGCGATCGTGGCCCTGCTGGTCGC 7796216 36 97.3 38 ..........-.......................... CTCTTCGGGGCGTGGCCCGCATCGGTCACCGTCGACTA 7796290 37 97.3 0 ...........................C......... | CC [7796316] ========== ====== ====== ====== ===================================== ======================================== ================== 11 37 99.3 38 GTGGCATCGGCCCTTCGGGGCCGATGAGGATCGCAAC # Left flank : CAGCGCCCGCCACTCCCCGCAGAAGATTCGCGCCAAGTTCCTTATGCGGGACCCCCACACGCCCACCGTGCTTCTCCGCAGCCAGCAACCCCTGCTGCCACAACCCGCACGCCTTACCGGCGTCATGAAACAACCCCAACGCGGAACCGAGCTCCCTCGCGCCGAACTCCGCCGCGAACCGACCAGCCAACACCGCCGTCGACCGAGCATGCCCCGACAGCAACTGACGCCGCCCCAACACATTCGCACTATGCGCCCACATACATCCCCCGCCGCACGACCGGCCACCGTGAAAACACGCCACACCCTACGGGCACCACGCCATCCCAGACCGATCCGCCACACACGGGAAAGTCAGGGCCAAGCACTCCCCAGCCACAACTTCGGAGCAGGGAGCGTAGGACGACACGCCACGGCACACCGAACCGATACCCTGGCGTGTCGGCTTCAACTAGGACACAATGCCTGCACATTGAAAACAAAACCCCAGCATAAGCAGG # Right flank : CTATCGGCCTCGAAAGCAGGCGTCATACTCGGCCGCCCCCTCAACGTTCGACATGAGTGTTGCGTTTCGCGGTTCAACTGCGATAAATCTGGTATGGCCAGGCCTCCAGCAGGACATGAGCCCGCACCGGATGCGGTGAGGTCGATACTGCGCGCCTGGGCAGAAGAGATCATCAGTACCGGCTATTCCGACGCGGTATCGCTGGACACGCTGAGCGAGACGTGGCGGCGCCGTCGGCGTTCACTGGCGGCAGCGATCACAGACGAGTACACCTGCGGAAGCATTACCGGAACTGCAGCGTGGCAGCCGGACGAGACTGGCAGCGGGCCCTATCCGCACACCAAGCGTTCCCAGGACACCTTCGGCCGGCGCGCCGGGATGCCCCCGCCCAGCGCCGCCTGACTCCACGACACCCAGCACCGCCTCCGCGCAGCGGACGCAGCGACATGGCCCCTTCGGATACTGACAGCGTCGAAGCGCCACACATCCACTAGACGGAG # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGCATCGGCCCTTCGGGGCCGATGAGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-15.80,-14.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [51.7-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0 Confidence: HIGH] # Array family : NA //