Array 1 1788934-1790485 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP014163.1 Aerococcus urinaehominis strain CCUG42038B chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1788934 28 100.0 33 ............................ CAAAGGGATTAAGCCCTTGTGCTTTGCATAGTT 1788995 28 100.0 33 ............................ TGTATAAGTTTCGCCTTTTTTTACATCCGCTAT 1789056 28 100.0 33 ............................ CTGGGCTCTAGCATAGACAGTCTGCCAGCTGAT 1789117 28 100.0 33 ............................ TGAGCTTATCAGCGGGATTGCTATAGAAAAAGT 1789178 28 100.0 33 ............................ CTGAGAAAACGTCACGGCCAACTTAAAGAGTAC 1789239 28 96.4 33 ..........................T. TACGAGGGTAGCACGCTCAATATATCTAATATT 1789300 28 100.0 33 ............................ TGCCATTCCACACGCCGTCAATGATTTCTCTGA 1789361 28 100.0 33 ............................ CGATAGACAGACAGCACCCTGACGCCGAAAAAA 1789422 28 100.0 33 ............................ TGCCATTCCACACGCCGTCAATGATTTCTCTGA 1789483 28 100.0 33 ............................ TTAGGTCGGTATCTAATACCGGTGCATTCTCAA 1789544 28 100.0 33 ............................ TCTCTACATAATTCTTTGACCTCTTCTAAAATA 1789605 28 100.0 33 ............................ CGATAACCCTAATCAAATCATGGCATCAATCAG 1789666 28 100.0 33 ............................ CGGGGTAGCAATCCAATCAGCAGGCAAGCTAGG 1789727 28 100.0 33 ............................ TAATCAAGCCCCAGTCGCAGTGACTGAGGAAGT 1789788 28 100.0 33 ............................ CTATAGCCATGACTGAGTACCTGGAACGTATGC 1789849 28 100.0 33 ............................ CAGGAGGAAGCTGACAATGAAAATTAAAGTCCG 1789910 28 100.0 33 ............................ TCTGCTCTTTGAAAAAACCACTAGTAACCATTT 1789971 28 100.0 33 ............................ CTTAACTTCGCTTTGCATACGTACCTCCTAAAA 1790032 28 100.0 32 ............................ TTTAGCAGGGTCTTCATTACCCATCATACCAT 1790092 28 100.0 33 ............................ TAGCATGTTTGCCTTTAAATTTGCCAAAAGTAA 1790153 28 100.0 33 ............................ CAGTGAGTTATCTCGGTAACTATCATCATAGAC 1790214 28 100.0 33 ............................ CTTAACGCAAAAAGAAGTAGCCGAGAGAGCAAA 1790275 28 100.0 33 ............................ CGATTTTCCAAGTTCTTTGATACCTTCATCATT G [1790297] 1790337 28 96.4 33 .......................A.... CTAATTACGCATGGACGTAACGGTCGAATCAGG 1790398 28 100.0 32 ............................ TGTCGCTAAATTTAATTTTTTTATTAAAAGAA 1790458 28 82.1 0 .......T....C......AC.....T. | ========== ====== ====== ====== ============================ ================================= ================== 26 28 99.0 33 CTTCTTCCCGCATACGCGGGGGTGATCC # Left flank : CGAAAAGCGAGATCAAATTATCGAAATTGCTGCAGTTAAAATTCATGAGGCTAGTATCGAGCCTTTTCATAGGCTGGTCAATGTTGACAAGCAAATACCAGCTGCTATAACAGATTTAACAGGTATAACTAACCAGATACTGTCTGATGAAGGGGTCAGTATTGCTAGCGCTATTCAAGATTTTAAACTATTCATAGAAAATACAGTTTTAGTCGGCTATAACATCAATTTTGATCTTAAATTTATCAATGCCTATTTAAATGCTAGCCAACAGCCAGTGTTTAATAATAAAACGCAGGATTTAATGAAGATTGTTAAAAAAGATAATATGTTTTTAAATAACTATAAATTACCTACTGTACTTAAGAGTTATGATATCATGGATGAGGTTGTACACCGGGCCCAGGAGGATGTAGTCTTGTATCTCAAACTAATGAGCAAACTAAATAAATTTGATCATTTGAATATTGAGAAGCTTGATTTGGATGGGATCTTTTAGT # Right flank : CTTACTAATTAGTACTAATCAAAGAATGGGCAATTGCTTAGAGGTATTTATAAAAGTTGACAAAATTAATCACAGATTGTACTATTTAGGTAGTATACAGCCTATTGGTGTATGTAAAGGAGGTAATGTTATGGCTACAACAAGTTTTACTAAAAATTTTAAAGTGAGCGGACAAAAAAGTGAATCTTTTGTTAAAATAATGACCACCCGTCCTAAAAAATCTATCGATACCCAGTTTAAGTCTAAGCGTACAAGTGTATTAGATAGAAAAGATTTACTAAGGAAAGCATTAACCTAAGTGATTGAATATGAAGTTTATCCCTTATCTGACTTGTTATCCGCTGACAAAGCAGATATAGATGTAGAAAAATTAAAGGTTTCCATGTCCTCTTTTAAGTGTAGGAGAGAAGTAGATATGGAAACCTTTTTGAGTTCGAAAGCAATCACATATGATAATTCGGCAATAGGAAGAACGTTTTTGATTGTAGATAAATATGAAT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCTTCCCGCATACGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCTTCCCGCACACGCGGGGGTGATCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.90,-9.80] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //