Array 1 946615-947862 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP019172.1 Salmonella enterica subsp. enterica serovar Saintpaul strain CFSAN004175 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 946615 29 100.0 32 ............................. CAACAGCGTCCCGTATTCTGTATCGTTGACGG 946676 29 100.0 32 ............................. CGCATTACTACCGGGATTAGTACCTATCAAAA 946737 29 100.0 32 ............................. GCAGACGCTGCCGTCCCCCCGCTCGACGCTGA 946798 29 100.0 32 ............................. CAGCGGGAAAACGTCCAAGTGCCCATATCCCC 946859 29 100.0 32 ............................. CCTTCAGAACATGCGCGGTATTATTTTTGACC 946920 29 100.0 32 ............................. CCGTGGAAAGAACCAGAACGCTGGATATTGGT 946981 29 100.0 32 ............................. ACCACATCAATGACCACATCACGCAGATATTA 947042 29 100.0 32 ............................. CGCCGTGTTTACTTCAATAGCGACGTTGTGAG 947103 29 100.0 32 ............................. AGGTTGACCATCGTCAGCTTCATAAAGATTTA 947164 29 100.0 32 ............................. GGCGTTATTGAGTGGGAAAAAATCGTAAGCGC 947225 29 100.0 32 ............................. CTTGTCGGCGTTGCTCACGTGACTATTTCGCA 947286 29 100.0 32 ............................. CGATAATTTATAAATTTTCGTCCACTCATCAA 947347 29 100.0 32 ............................. ACCGTTATCTGCTGGTTGATACTTCCCCGAGC 947408 29 100.0 32 ............................. CCGCAGAACGCCGCATCGCCGAACTGGACAAA 947469 29 100.0 32 ............................. TGCCGGTTTATCTGCTCCGGACCAATCGACTA 947530 29 96.6 32 ...................A......... CGCCGCCAGCTGGAAAAATGCCGCCTGTTAAT 947591 29 100.0 32 ............................. CTCCAGCCGACGCATTCGCTTGATCGCTTTAT 947652 29 100.0 32 ............................. GGGCTGGACCTCGATTTATTTAATACGTTTAT 947713 29 100.0 32 ............................. TCCCAACTCGTCAGGGCGGTTATCCAGCGCCA 947774 29 100.0 32 ............................. GTCACGAGGTCTGACGCGGATGTGATGAGTTA 947835 28 93.1 0 .......................-.G... | ========== ====== ====== ====== ============================= ================================ ================== 21 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATTAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCGCGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGACATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 964122-965067 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP019172.1 Salmonella enterica subsp. enterica serovar Saintpaul strain CFSAN004175 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 964122 29 100.0 33 ............................. TTGAGCACGACGAAATTTGGGTTTGATGCAGCC 964184 29 100.0 32 ............................. GTTATTCAGTTTATTAAATTTTTCCGCCAAGT 964245 29 100.0 32 ............................. CAACTGTATTTTGCGTTATTACGCTGAACCAG 964306 29 100.0 32 ............................. CCGAGGTCGGAGCGGATTGACTTAAACGGCAA 964367 29 100.0 32 ............................. TGCAACAGCAACAGGAGAGAATGCGGCAGCGT 964428 29 100.0 32 ............................. CGTCAGTTGCTGGAACTGGGGCACGATCTGGT 964489 29 100.0 32 ............................. GAGCGGCTAAACGATGAATTAACCAGGGAGCG 964550 29 100.0 32 ............................. GAGCGGCTAAACGATGAATTAACCAGGGAGCG 964611 29 100.0 32 ............................. GAGCGGCTAAACGATGAATTAACCAGGGAGCG 964672 29 100.0 32 ............................. TAAGTTACGCCAGTGCGGGCGTGTTGCTCATC 964733 29 100.0 32 ............................. GAGACGCCAGATGAATTCTGCGGGACAAGAGA 964794 29 100.0 32 ............................. AACGCAGGAGAACCAGCCGCCGGTCCTCCTGC 964855 29 100.0 32 ............................. GTCTGACCAGTGGCGTGGGGGGATTGCAATTT 964916 29 100.0 32 ............................. CGTGGCTGGAGCAATGAACAGATTAAAGGGGT 964977 29 100.0 32 ............................. TCGCACAACGCCTGGATATCCGCCCATCGGCC 965038 29 96.6 0 ............T................ | A [965065] ========== ====== ====== ====== ============================= ================================= ================== 16 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCACTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //