Array 1 7632-5352 **** Predicted by CRISPRDetect 2.4 *** >NZ_FFFQ01000002.1 Listeria monocytogenes strain 2842STDY5753940, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 7631 36 100.0 30 .................................... TAATCGAAAACGGAAAATCGAAATTGGTCC 7565 36 100.0 30 .................................... GTGATAGTTCTGTTTAGATCTACACTTTTT 7499 36 100.0 30 .................................... ACGTTCTTCCGCAGAGAGTTCAACGTAACT 7433 36 100.0 30 .................................... TTAGTATGTCGTTTCGTTTCTGGAAAACCA 7367 36 100.0 30 .................................... AATGAAATGGATTTAAAGACTATCTATGAC 7301 36 100.0 30 .................................... AAAAACCTGTTGTCCCCTCCGCAGTGGCTC 7235 36 100.0 29 .................................... AAAATAAATCATTCTATAACACGGATGCT 7170 36 100.0 30 .................................... CTTCGGTGTATCCTGCCAACCGTAGCGCTT 7104 36 100.0 30 .................................... TTTCTGTCAGTGTTTCATCAACACTTATCA 7038 36 100.0 30 .................................... GAAAACATCTATCAGACTCAAGACCAAACT 6972 36 97.2 30 .....................T.............. TTGATGAAAGGTGTTAAGGACATCATAAGC 6906 36 100.0 30 .................................... AAAATATAATCAGAAGGTTTCGGGCTACCT 6840 36 100.0 29 .................................... TCCAATGCTTTTTTTACATCTCTCGGAAT 6775 36 100.0 30 .................................... TTGGATATTAACCCTTTTCAAACATCCGCA 6709 36 100.0 30 .................................... CCCTGCTTTGTTGTACAGGAAATATTATTC 6643 36 100.0 30 .................................... ACCTTACGGAAGATAACCGCATTGGCTTGA 6577 36 100.0 30 .................................... TCAGCAAGATTTAGATCACTACTTGTTCAC 6511 36 100.0 30 .................................... TTCATCTGTACCCTATCAAGTATTAGCCGA 6445 36 100.0 30 .................................... GCGGCTAAAGTGATTTGACCTTTACAATCT 6379 36 100.0 30 .................................... TACTGCTCCATTTGTCCCTTTCGCAAAGCC 6313 36 100.0 30 .................................... GCATTAAAGCATTTGCGCCACGCAACGTTT 6247 36 100.0 31 .................................... CAGGCGCGTGCGCGACGTTTCTGTCAGGCGC 6180 36 100.0 30 .................................... AGTTATTTGGAACAATGGTAATGGAACACA 6114 36 100.0 30 .................................... GACTTCGAAATGGAGTTATTGACTCTCAAA 6048 36 100.0 30 .................................... AAGAGCCGGAGCTACTTCCTGGCACCACAC 5982 36 100.0 30 .................................... TAACTCACTGTCACTAGCTCCTGATGTTGT 5916 36 100.0 30 .................................... AGAATTTCTCTTTGATTTTTTGTATAGTAC 5850 36 100.0 30 .................................... TTGTTAGCAGAATCACGACGTACAGAAAGT 5784 36 94.4 30 A..................G................ AACAAAATCATCATTACCTGTGGAGCTGTG 5718 36 100.0 30 .................................... AGAATTGTTTACATATTCGTCATCCCAGTA 5652 36 100.0 30 .................................... TCTGTTTGCAGGCATTGGCGGATTTCGTTT 5586 36 100.0 30 .................................... TAAAAGTAATGAATTATTCAGAACCAAGAA 5520 36 100.0 30 .................................... TTTTTTGATCTATTAGTAAACTGTTCGAAT 5454 36 100.0 28 .................................... TAATATTCTCCCCCCATCGCTAACAGGG 5390 36 86.1 0 .............A.....C.....A.A.......G | C,A,T [5355,5358,5363] ========== ====== ====== ====== ==================================== =============================== ================== 35 36 99.4 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : GACAAATTAACCGCGACGATTAGCGAGTTGATAGGTTACGAATTATTGGAGCATGAACTGGATTTAGAAGAAGATGAAATAACGGTCATTGAATTATTCAAAGCTTTAGGAATAAAAATAGAAACAAAAAGCGATACCGTATTTGAGAAGTTAATTGAAATAGTACAAGTCTATAAATATCTATCTAAAAAGAAATTGTTAGTACTTATTAACGTGTGTTCCTATCTTACAGAGGAAGAACTGCTAGAGTTGAGACGGTATATCTCTTTATATCAAGTCAAAGTACTATTTATTGAACCTAGAAAAATAAAAGGATCTCCGCAAGTTACTTTAGATTCTGATTATTTTTTACATGTGGAAAATAGTGTATAAGGTAACCGCTGTTCTTTGAAAACAAAATAAATTTTATGTAAACCATAAAATAGCATTCAAAATTGAAATCTTGCTATGGATGAATGGCGCGATTACGGAATCTTGGAGGAAAGAAAAAATTCTGCGAG # Right flank : ATAAAATGCATCGCAATTACCAAACCATGGTTAAATTTAAAAAGGAGTTAGGCTATCTATATGACACAGTATCACTATCTTGCTTCGAAGTCGCTCTTAGAAAATGATGGGGAAAAGTTCCCTCGTCTTTATATTAGACTTCTTAAATTTGAATTTTGATATGAATGTTGACCAAGACACTAATGAATTGTTTTTCTATTCAATTGATTTGAATTCAGCTTGTAAATGTAAGTAAAGAGAACCTGCCGCTGAAAGGTAATGGGCAAAAAAATTGTTACGAGACTAAAAATTTAAAAATCTTGTATGATTATATTCTAAATACAAGTAAAGATAATGAAACGATTGAACTATATACTGCTTGAAACAGCGAGGAAGATTTCCTGTTTTTGAATAAAACAGAACTGCTGATCTAGAATTTAACTATCGAAAATCTAATTTTAAATGACAGAGAACTATTAATAATTAGAAATGAAAACCGATATAACTTTTAGCACCATTCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.80,-1.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //