Array 1 18460-19587 **** Predicted by CRISPRDetect 2.4 *** >NZ_AOHC02000023.1 Leptospira weilii serovar Ranarum str. ICFT ctg7180000034514, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 18460 29 96.6 32 ............................A AAACCGGAATCAGGAGTTTCAACGCTGCGTTC 18521 29 100.0 32 ............................. AAGGGGCGCCGGGCGCGGGAATGTTTTCAACT 18582 29 100.0 32 ............................. GCGACTTGGGTTTAGAGCCTTCAGCGGGAATC 18643 29 100.0 31 ............................. AATTCGATCGAACCGAACACACAACCAGAAA 18703 29 100.0 32 ............................. AAGTCCGGTCAAGGTTTCTACAATCGGAGCGG 18764 29 100.0 31 ............................. AGGGGGCCCTCCATTAGTGAGACAAATTAAA 18824 29 100.0 32 ............................. TAATCATCTCCCCGGTTTGAGAAGACGTGAGG 18885 29 100.0 32 ............................. AAACAATTCAGCAAATGGGTAGAAAAGAAAAA 18946 29 100.0 32 ............................. AGATTGCTTTCAACCGGATTGAATGGTATAAC 19007 29 100.0 31 ............................. GGATGAACACGGGAAGGATAATAATAGTGAA 19067 29 100.0 32 ............................. GAAAAATATTTGGAGAGTTTTAACTCAGTGGA 19128 29 100.0 32 ............................. AAATCTTCAATTAAAAGGAGTGTCAATTAAGC 19189 29 100.0 34 ............................. AGTTAATGAATCTGTGCGAAGCAAACGCAACGTA 19252 29 100.0 32 ............................. ATTATCTATTCTCAGAAAATAAATTACCTATA 19313 29 100.0 34 ............................. TTGAAGTCCCCTTTAACGAGGCACAGGAGATCAT 19376 29 100.0 32 ............................. AGTTGGTTCCGTTTTGTGTTGTCGAACATTCT 19437 29 100.0 32 ............................. AAGTAGGGCTTCTTGGATTCGAAGTTGATTGA 19498 29 100.0 32 ............................. TAGCTGAATTGATTGGAGTAAGAGACGGACTT 19559 29 86.2 0 ......................C.G.TG. | ========== ====== ====== ====== ============================= ================================== ================== 19 29 99.1 32 CTATTCCCCACACACGTGGGGTTGAACCG # Left flank : AACAAAGTAAATTACTAAAAAGGATTATTCCGGACATCAAGGAGTTGATTTATGGTGGTTCTGATTTTAGAGAGAGTGAAGACTTCTCAGAGGGGCGAGATATCGCGGTTAGCCATTGAGCTTAAACCGGGTGTTTTTGTCGCGTCCGTTAACGCCAGAGTTCGAGATCAGCTTTGGAAAAAAATTTCCGAAGAATGGAAATCGGACGCGATCCTGTTGTACTCGAGCAACACCGAACAGGGTTATGGTATCCGTTCTCACGGCGATCCTTCTCGCGAGGTCGTGGACTTTGACGGTTTACTTTTAATGTCCAAACCCGATCCTAAAAGGGGGCAGAAAGACATTCCAGATGAATTCAATTTTTCTAATATTCCCGACGGGGACGAGTCCCCGTTTTCGAACCTCAAAGATTTTATGAATGAAAAAGCGACATCCTTACTTTTAGAAACCGATCCGTTTGAACCGACATAATTCTTAAGATTCCTATACAAGTTTTTAGC # Right flank : GAAAACAGGATAAATTTTGATTTAAAAACCTAACCCCTAGTTCCTAATCCCTAACCCCTTGAAACACACACGTGGGGGTCAGATGGAAAATAGGATGGATTTTGATTTAAAAACCTAACCACTAATTCCTAATTGCTAACCCCTTGAAACACACACGTGGGGTCGATGAAAAACAGGATGGATTTTGATTTAAAAACCTAACCACTAATTCCTAACCCCTTGAAACACACACGTGGGGTCGGATGGAAAACAGGATAGATTTTGATTTAAAAACCTAGCCACTAGTTCCTAATCCCTAACCTGTAAAGTCCTAAAATCAGGTTGAATCGTCATTTGCGTATGCAGGAGGAAATAAGTTATTTATTACCGATGGTTCGAAACATTCGTAAGGCGATTTACACTTTCAAGTGGCTAGGGTTTAGTGATTAGAAATTAGTTACATTTTCCTAATAGAACGATCTGACTTGAAACAGAGATTGATTTTCCTCTTCAGTAAATTT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTATTCCCCACACACGTGGGGTTGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTTTTCCCCACACACGTGGGGTTGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 106588-110492 **** Predicted by CRISPRDetect 2.4 *** >NZ_AOHC02000026.1 Leptospira weilii serovar Ranarum str. ICFT ctg7180000034525, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================================================================================================= ================== 106588 29 100.0 32 ............................. TTCTCAGACGATTGAGTATCAGAGTTGACCTC 106649 29 100.0 32 ............................. ACCAAATGCAGAAACGAAAAGTAAACTTAGAA 106710 29 100.0 32 ............................. TGGTTTTCGCCTTGCATTATAACCCAACGATT 106771 29 100.0 32 ............................. ATCCGGCTTGCTTCGGACCGAATGAGGATGTT 106832 29 100.0 32 ............................. TATTATAGGACCTTTTCGATTCATTTTAGGAA 106893 29 100.0 32 ............................. AACGCTGATTCTTCCAAACAGTCGAATAAAAA 106954 29 100.0 32 ............................. ATTTGCCGTTGTCGCACTCGCTGTCAGAAAGC 107015 29 100.0 32 ............................. GTTTTGAATGGCGTGGACATTTTCACGGGCGC 107076 29 100.0 32 ............................. AGTGGGGGGAATATGATCATACTCCTAAAAGA 107137 29 100.0 32 ............................. GACAATAACCGTGCGTATCGGATTGGTCACAA 107198 29 100.0 31 ............................. AAAATCCTTCCGCGCTGTAGCTCACCTCGTT 107258 29 100.0 32 ............................. TCCAAATGATCCGAAACCAAGTTTCGGAAGTT 107319 29 100.0 32 ............................. CCAATGGCGCCGCAGTGCTCACGATGCTGCGA 107380 29 100.0 32 ............................. TGATTTGAATCCGCTCCGAACTGCGGGTCTGA 107441 29 100.0 32 ............................. GATCCTATGCGAGTAACACCTTCTCCGAGATC 107502 29 100.0 32 ............................. TGCCAATTTTTACCCCCGTTCGATAGTTAATA 107563 29 100.0 32 ............................. GCAGATTGCGTATTTTTGACCAAACCTTTCTG 107624 29 100.0 32 ............................. CAGTGGGGAATTTTCCAACCAGACCCATTCTG 107685 29 96.6 32 ............................A AATCAAACCGCGGCGCGCTTCACAGATTATTC 107746 29 100.0 32 ............................. ATCGAAGAAGACTGTTCTTGTTTTGTTTCCTC 107807 29 100.0 31 ............................. GGAAAAAAGCCGATTCTGATTATTCCAACAA 107867 29 96.6 32 ...........C................. ACGATCTGCGTAGAGGTCACTTGGATAACCGG 107928 27 93.1 32 ........--................... ACTATGGGGATGTCCAGATCGGAAGTCGAAAA 107987 29 86.2 49 ......................C.G.TG. AAAACAGGATAGATTTTGATTTAAAAACCTAACCGCTAATTCCTAATTG 108065 29 93.1 32 ...A....T.................... ACAGAATGACAAAATTTTGCCGGTTTTTCCTA AAACG [108075] 108131 29 100.0 32 ............................. GAAACATCCGGTCAAAACGTTTATCTTTTTCA 108192 29 100.0 32 ............................. AAACATGCTTCCGAATGGATTGCAATCTATCA 108253 29 100.0 32 ............................. TGAACCTGCACTATTCGCGGTATCAGACATTT 108314 29 100.0 32 ............................. TTTTGTTACGATAAAATAAATCGTTCCGTTAG 108375 29 100.0 32 ............................. AACCTTGCAAGCTCTTGCATCAGCAATCCAGA 108436 29 100.0 32 ............................. ATGAATTTCTGGGAGTAGGTGGTGAGGAAATC 108497 29 100.0 32 ............................. AGATTTGTCAGTCCGGGAGGCCGGACTGGTTA 108558 29 100.0 32 ............................. TTCGTTTAAGGTATTGTCGAAAGTCTTCGGGT 108619 29 100.0 31 ............................. TTTTTACCGTGCGCGCCCGCCGTATGTCCGC 108679 29 100.0 32 ............................. CTGGGCGATCAAATTCGAACCGGTGAATCTTA 108740 29 100.0 32 ............................. CATCGTAGGCTCTTTCACGTTCACTAAGATTT 108801 29 100.0 32 ............................. GCGAAGAAGTCCTCTACGGGGAAGTAGTTTTA 108862 29 100.0 20 ............................. GTCGGGGAAGGCGGCCCGCG Deletion [108911] 108911 29 100.0 32 ............................. GACGGTGATCCTACGAAAGTTCGCGAACATTC 108972 29 100.0 32 ............................. AGTGGAAAAAGCTCGATTCTCAGATTAAAAAA 109033 29 96.6 32 ............................A TAATGAACCGAAGCGCCGCCTACGTTCTTGCC 109094 29 100.0 33 ............................. CGAAGGCCGCGAAAGATTCCGGCGCAATCTCCG 109156 29 100.0 32 ............................. AGCCGAAGAAATTTATCACGAAATCGCGGGAA 109217 29 100.0 34 ............................. CTCTTGAATCGAATTATAACGAATCTTATCTCCT 109280 29 93.1 32 A.T.......................... ACGGACTTTTACACATCTCTCCACTTGATCCT 109341 29 100.0 31 ............................. AAAATCCTTCCGCGCTGTAGCTCACCTCGTT 109401 29 100.0 32 ............................. TCTGAAACAAATACAAGAAAACACCGTAATAG 109462 29 100.0 32 ............................. TATTAAATTGGCTTAAACCACAAATTCAGGAA G [109483] 109524 29 79.3 113 .................A....A..TGGA AAATAGGATAGATTTTGATTTAAAAACCTAACCCCTAACCCCTTGAAACCGTGGGGTCGGATGGAAAACAGGATAGATTTTGATTTAAAAACCTAACCGCTAATTCCTAATTG C [109546] 109667 29 93.1 31 ...A....A.................... TAGTTGGCGCGAATCGGGAGAAGAATATCTG TAA,GT [109675,109681] 109732 29 100.0 32 ............................. CAATTGATGTTGCCTCCCAGGGTTACAAAAAT 109793 29 100.0 32 ............................. ACTGGTAAACCCGTTTTTAGTATGCCGACATT 109854 29 100.0 32 ............................. CGATAACACAATTCGTGCAAAAAGGCGAGCTT 109915 29 100.0 32 ............................. AATGCTGCCCTTGCGGCTGTGTAAGAAGATTG 109976 29 100.0 32 ............................. CTCGCGCGGATTCCTATTTCTATATCCATGCT 110037 29 100.0 32 ............................. AACACGTTCTTGGATTTGTCGAGCACTTCTTG 110098 29 100.0 32 ............................. TATTGCCCGAACAATCGCTCGATCCGCGGATT 110159 29 100.0 31 ............................. TAGAAGGGAAAGCTACTCGTGCGATCATAGG 110219 29 100.0 32 ............................. CTAAGGTTAGTTTATGTTTGCCTTCGAAGCCC 110280 29 100.0 32 ............................. TTTGATCTCCGCATTCGCCGCATCCAGCGCAC 110341 29 100.0 32 ............................. TCTTGTGTTTTTGGTGTTACAGATCCAGTCGA 110402 29 100.0 32 ............................. TCTTAAATTGGCTTAAACCACAAATTCAGGAA 110463 29 79.3 0 .................A....A..TGGA | C [110485] ========== ====== ====== ====== ============================= ================================================================================================================= ================== 63 29 98.5 33 CTATTCCCCACACACGTGGGGTTGAACCG # Left flank : ACTTTCTTATACCGAATTCACGTTAATTTAATATTTTGCCAAATGAATCCTATGGTTCGATTTGTAAAAAAGTAAAAGCAAGTTTGTTTGGCGGAGTTAAATTTTATCCGAAGATGAAATTTTCGAATTATCTCTGAAAAATAAAAACGATTTTGAAATACATTTTTTTCTAATATTCCGATCTCTCAGTCCCGATTTTATACATGTTATGCGAAACCGAAATCTCCAAGAATTATCCAATTCGGTAGACAATCGTCTTCTTTTATTAGGTCCGGGAACCAACATTACATATTGGGTATTAAAAGAATTTTGGACAGTCGATGCTCCTTGTTTGGACCGGGGAAACGAAGTATGTTTTGATTTGGAACCCGATAACGGCGCTTGTCCCTTCCTAAACTTCGATTTTTTTTTGCGAAAAACAAAATCATTCCTAAGGAAAATGGATCAAACGACAATATTCCTTAGACATAATATTCAATTTTACTATACAAGTCTTTAGC # Right flank : AAAATAGGATAGATTTTGATTTAAAAACCTAACCCCTAGTTCCTAACCCCTAATCCCTTGAAACACACACGTAGGGTCGGATGGAAAACAGGATAGATTTTGATTTAAAAACCTAACCGCTAATTTCTAATCCCTAACCCCTTGAAACCGTGGGGTCGGATGGAAAACAGGATGGATTTTGATTTAAAAACCTAACCCCTAATTCCTAATCCCTAACCCCTTGAAACACACACGTAGGGTCGGATGGAAAACAGGATAGATTTTGATTTAAAAACCTAACCCCTAATTCCTAATCCCTAACCCCTTGAAACCGTGGGGTCGGATGGAAAACAGGATAGATTTTGATTTAAAAACCTAACCCCTAATTCCTAATCCCTAACCCCTTGAAACCGTGGGGTCAGATGGAAAATAGGATAGATTTTGATTTAAAAACCTAACCCCCTAGTTCCTAATCCCTAACCCCTTGAAACACACACGTAGGGTCAGATGGAAAATAGGAT # Questionable array : NO Score: 6.07 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:-0.11, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTATTCCCCACACACGTGGGGTTGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTTTTCCCCACACACGTGGGGTTGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-37] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 111031-112725 **** Predicted by CRISPRDetect 2.4 *** >NZ_AOHC02000026.1 Leptospira weilii serovar Ranarum str. ICFT ctg7180000034525, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================================= ================== 111031 29 96.6 32 ...A......................... AATAAAACGGAAGCCGAATCCGAGTCGGCAAG TTGAAA [111039] 111098 29 100.0 32 ............................. AGAAAGTTTCGTTTTCTTATCAGTAGTTTGAT 111159 29 100.0 32 ............................. AGCGTGACGCGCCTTTGTGTGTTCCATGCGTA 111220 29 100.0 32 ............................. GCGAGTATTTGTAAGGAAAAATTTAGTGAGTG 111281 29 100.0 32 ............................. TCAAGCTCCTGATGGAAATCAAGGCGATCGGT 111342 29 100.0 32 ............................. GATTACTTCAGCGAGTTCGGGTGTAATATCTT 111403 29 100.0 32 ............................. TGATTAATGGTTATATCCCTCTGCACCGCGTC 111464 29 82.8 49 ......................CAG.TG. AAAATAGGATAGATTTTGATTTAAAAACCTAACCACTAATTCCTAATTG 111542 29 89.7 32 ...AC....G................... AAATGTTCACCTGATAGACGCATGGTCTCGGG TTGAAA [111550] 111609 29 100.0 32 ............................. AAATCCAACTTCGTTTGTGGCTTGCTGTTCTA 111670 29 100.0 32 ............................. CCCCAGAGGTTATAAAAATGGACACTCCAAAA 111731 29 86.2 49 ......................C.G.TG. AAAACAGGATAGATTTTGATTTAAAAACCTAACCGCTAATTCCTAATTG 111809 29 96.6 32 ...A......................... CGACAAGTGCGTTATGCTCCTATCTCGTGAAA TAAAA [111817] 111875 29 82.8 49 .................A....C.G.TG. AAAACAGGATGGATTTTGATTTAAAAACCTAACCCCTAGTTCCTAATCC 111953 29 93.1 32 ...AC........................ AGCCGACGTTTAGAGACGCACAACTCGAACGT TTGAAA [111961] 112020 29 86.2 49 ......................C.G.TG. AAAACAGGATAGATTTTGATTTAAAAACCTAACCGCTAATTCCTAATTG 112098 29 93.1 32 ...A.....G................... ATGGCCGAGGAATTAATCAAACCAGAGGGATC TAAAA [112106] 112164 29 100.0 32 ............................. CCGTGTCCGTTCTAATCCGCGACGCAGCGAAC 112225 29 100.0 32 ............................. TGAGCGAAAAAAAGATATATTTTTAAAGCGTC 112286 29 82.8 32 ......................CAG.TG. AAAACCTCTCACGAAAAAAATCGAGGTTCGTT 112347 29 79.3 49 .................A....CAG.TG. AAAATAGGATGGATTTTGATTTAAAAACCTAACCCCTAATTCCTAATTG 112425 29 96.6 32 ...A......................... AGCCGACGTTTAGAGACGCACAACTCGAACGT TAAAA [112433] 112491 29 86.2 49 ......................C.G.TG. AAAACAGGATAGATTTTGATTTAAAAACCTAACCGCTAATTCCTAATTG 112569 29 93.1 32 ...A.....G................... AGATTAGAAAAGTTGCAAATCCAAACTATGCA TAAAA [112577] 112635 29 100.0 33 ............................. TTGTTCTATAGGAGAGAACAAACTAAACGTTCC 112697 29 86.2 0 ......................C.G.TG. | ========== ====== ====== ====== ============================= ================================================= ================== 26 29 93.5 36 CTATTCCCCACACACGTGGGGTTGAACCG # Left flank : TTCCTAACCCCTAATCCCTTGAAACACACACGTAGGGTCGGATGGAAAACAGGATAGATTTTGATTTAAAAACCTAACCGCTAATTTCTAATCCCTAACCCCTTGAAACCGTGGGGTCGGATGGAAAACAGGATGGATTTTGATTTAAAAACCTAACCCCTAATTCCTAATCCCTAACCCCTTGAAACACACACGTAGGGTCGGATGGAAAACAGGATAGATTTTGATTTAAAAACCTAACCCCTAATTCCTAATCCCTAACCCCTTGAAACCGTGGGGTCGGATGGAAAACAGGATAGATTTTGATTTAAAAACCTAACCCCTAATTCCTAATCCCTAACCCCTTGAAACCGTGGGGTCAGATGGAAAATAGGATAGATTTTGATTTAAAAACCTAACCCCCTAGTTCCTAATCCCTAACCCCTTGAAACACACACGTAGGGTCAGATGGAAAATAGGATAGATTTTGATTTAAAAACCTAACTGCTAATTCCTAATTG # Right flank : GAAAACAGGATAGATTTTGATTTAAAAACCTAACCCCTAATTCCTAATCCCTAACCCCTTGAAACACACACGTGGGTCGGATGGAAAACAGGATAGATTTTGATTTAAAAACCTAACCCCCTAGTTCCTAATCCCTAACCCCTTGAAACAGTAGGGTCGGATGGAAAACAGGATAGATTTTGATTTAAAAACCTAATCCCTAATCCCTAACTCCTAGCCACTTGAAACCCCTAACCCCTTGAAACGCGAATTCATTTTTTGAATTTTATTCGTCTATTGAATGGATAAGAGTTCTTTGGAACTCGCACTTCCATTCGTTTTAACAAAAAAGCTAAAACGAAATCAATCGGATATAAACGCTGGTTTGCGGTCGTAGAATCGAATCGTAAAAGAAAAATAGGCAGAAATCATGAGTTCAAAAAAACCGTTCTTTCTGGGAATGAACTTTAATTTTCTAAAAATAGAAACTCGTATCTTTCTACCTTTTCTTTTGGGCTGCA # Questionable array : NO Score: 5.55 # Score Detail : 1:0, 2:3, 3:0, 4:0.67, 5:0, 6:0.25, 7:-0.02, 8:1, 9:0.65, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTATTCCCCACACACGTGGGGTTGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTTTTCCCCACACACGTGGGGTTGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [9-21] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.64 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //