Array 1 40896-39403 **** Predicted by CRISPRDetect 2.4 *** >NZ_BFMC01000200.1 Escherichia coli strain JML001 sequence200, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 40895 29 100.0 32 ............................. CGTCCAGTGATAGAACTCGACGACGGAACAAC 40834 29 100.0 32 ............................. ATTTTTTCCGTTAGTTAGTGAGCGTGATAACA 40773 29 100.0 32 ............................. AGGGTTACAGAAAAGAAGCATCGCAACTTGAT 40712 29 100.0 32 ............................. CACAAGAAAAAGATATCGCAGCGTCATTTATG 40651 29 100.0 32 ............................. GTCGCTTTTGGCGGCGTGGGCTAATGCTGGTT 40590 29 100.0 33 ............................. TTTTCGGGACGCACTGCAACCTACCAGGACCGC 40528 29 96.6 32 ............................T GTTTCGCCGCAAATACTACCGCAACGGCGCGC 40467 29 100.0 32 ............................. GCGTGGGCGAAATTGCGCAAAATACCGCTGGG 40406 29 100.0 32 ............................. GGCGATACGCCGCGCGATCGCATCCTCAATAT 40345 29 100.0 32 ............................. CGAACAGAAAAACCGTTCTCAGCCAGCGTCAG 40284 29 96.6 32 ....................A........ CAAACGATGAGCGGGCCAACGAATCGCCGTTG 40223 29 100.0 32 ............................. ATCCACGGTTCGACGCCGATCGCCGTGGCTAT 40162 29 100.0 32 ............................. CCGCCGTCGAGTGTAATACCCTGATCCATCGC 40101 29 100.0 32 ............................. CAGGATTGAAATACAGCCTCGGCCTGGGACAG 40040 29 100.0 32 ............................. AGGCGAGGGAGATCAGAGATCAGGCTATTACA 39979 29 100.0 32 ............................. AGATCGGCGGCCAGTGGATAACCGTTATCCCC 39918 29 100.0 32 ............................. GTGTGGTAATTGGTGGTCTGGCTGGTGGTTTA 39857 29 100.0 32 ............................. AGAATCTGGACACTGCATATACCGCAATCCGT 39796 29 100.0 32 ............................. CCAGCCGTTCAGTATTGCCGGTGTCAGCAAAA 39735 29 100.0 32 ............................. GAAAAGCTACTTTTGTGTTCAACTGATGCATT 39674 29 100.0 31 ............................. CCGCGCAAATCCAGCGAGCCGCCGACGCTCA 39614 29 100.0 32 ............................. TTGCAAACCGTGGCAAACGCAATTAACAAAAA 39553 29 100.0 32 ............................. AATCTATTGTGAATTTGAAATGGTCCAGCACT 39492 29 100.0 32 ............................. GGTAAAAACACGGTCTGAACCGACATTCATGT 39431 29 93.1 0 ...........AT................ | ========== ====== ====== ====== ============================= ================================= ================== 25 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTTGCCGCTGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGTTAGGCGATAGCGGTCATCGAGGACGCGGCGGATGAGTATGATCGTAGTTGTAACGGAAAATGTTCCTCCACGTTTACGTGGACGGCTCGCTATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTCGGAGATACATCCAAACGTATTCGGGAGATGATCTGGCAGCAAATCTCTCAACTGGCAGGTTGCGGAAATGTAGTGATGGCTTGGGCGACCAATACCGAGTCAGGTTTTGAATTTCAGACCTGGGGTGAAAATAGACGTATTCCGGTGGATTTGGATGGGTTGCGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCAGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAATTTGTTGCTTCTACCGAAAGTACGGCAATACCGGCTTTGTCGAAAACTTCGGCGTCATTACAACAGCCAGTACCCTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCACTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 632-115 **** Predicted by CRISPRDetect 2.4 *** >NZ_BFMC01000030.1 Escherichia coli strain JML001 sequence030, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 631 29 100.0 32 ............................. ACCGCAGAAAAAACCAGCTGGCCTCGAAAGAA 570 29 100.0 32 ............................. ATCTGGCTCTTCAAAAAACAGCAGCCTGAACC 509 29 100.0 32 ............................. CCGCCATCACAGAACCTTGCCAGACCGTATCC 448 29 100.0 32 ............................. CGCCCAGGATCAGCTTACTGCGCACCGTTTCC 387 29 100.0 32 ............................. AAAAAACAGCAAAAGATGAACAAAATATAAAC 326 29 100.0 32 ............................. GATCTAAAAAGGATCTGCGGAACTGAAAAAAT 265 29 100.0 32 ............................. GGTTAAACATGCCGTTAACGCCATTTCAGCGC 204 29 96.6 32 ..........................A.. TTTAGCGTAAAGTCAACAATTACTTGGCTTTT 143 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 9 29 99.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCAC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //