Array 1 1407482-1407782 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACFSP010000001.1 Bartonella sp. W8152 NODE_1_length_1574962_cov_203.957164, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 1407482 36 86.1 30 ACA..C..........................T... ACAGTCTATGCCTACACCTCAACCTGTTCA 1407548 36 94.4 30 ................G.......C........... ATTGGTTTCGCTATCTTCGAGCAACGACTA 1407614 36 97.2 30 .........................C.......... ACATCCGCTTGTCGCAACTGCTTCCGTTCT 1407680 36 100.0 31 .................................... CAAGCCAACGCGCATACTCGGCGTCGTCCCT 1407747 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 5 36 95.5 30 GTTGCGGCTTGACCGCATTTTCTAATCTGTTACAAC # Left flank : GCTTGGTATGAAATTCGGGGCAAAAGAAGTTTATGCCCGTTTCGGCTTTCGGAAGGTGTTGATGGCGGGTTCTCTCGTCTCGGCAATGTTTACCGCTTCCAATGGCTTGTTTTACCCCACCACGCCCTATTTGCTGATGATTATCGTGCTTTTGTTCGGCGGCTTTTTGCGCTCGCTTTTCTTCTCCGGTGTCAATGCGCTTGCCTTTTCCGATATTGCCAAAGAAGACATCAGTCAGGCAACGCCGATTGCCGCCGTTGCCCAACAGGCTTCAATGGCGCTCGGCATTGCAATTGCTGGCGCGGTTCTGGAAATTGCGAGCTCCTTTCACGACAATATATTGAAACTTGGCGATTTTCATACGGGCTTTTTCGTCGTCGGCTTTATCTCGGCACTTGCTTTCTTCATCTTCCGAACATTGCCACGTGATGCAGGCCATGCTTTGAACGAAAAAAGCAAACAATCCACCGCACAACATTGATGAAACCGAAACATATTCT # Right flank : CCGATATCCACTTACCCCTTTGTTTTATAAGGTTTAAGTGGATATTTTTTTTAAAAAAAATGCTGTTTTCCATTAAAATAACACCGGTAATTTTCGATTTTTTTGACGTGTCTTCCACGTTTTCCCTGAAAATCTAACAATATTTTCACATAAGAGCACGATCAATTTGCTTATCTGTAAGGTAGAAAAATATCGAACTTTCATCGTTCAGGCAAAGGTGTTTTAATCCGCAAACGTGAGCATCCTATCAAAGCGACATCGGAAATTTATTCATCAATCACTGAACACGCAATTCCGGATGCCGACTTTTTAAAAATCAAAATGGCTATATTTCCGCATTCAATTATTATGGCAGTAAACATTGGCTAAGCGATCTGCAAAAGACACGCTCGGAAGTAATATTTATAACGACTTTACTTCAAACGATGCCGGAAATTTTGAGAAAGCGGAAAAAGAAAAATTTGACGACACCGTTGGGTCGCCCCCCCCAACACCAAAAA # Questionable array : NO Score: 5.76 # Score Detail : 1:0, 2:3, 3:0, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCGGCTTGACCGCATTTTCTAATCTGTTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTTGCGGCTTGACCGCATTTTCTAATCTGTTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.80,-1.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,1.05 Confidence: MEDIUM] # Array family : II-C [Matched known repeat from this family], // Array 2 1408401-1409030 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACFSP010000001.1 Bartonella sp. W8152 NODE_1_length_1574962_cov_203.957164, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 1408401 36 88.9 29 ..C..AA.......C..................... TTCATCAATTCAAGTGCCTTACTGGTTAA 1408466 36 97.2 30 ..............C..................... AAACCCGCACCCTTTTGCTGGCGAAAAAGA 1408532 36 100.0 30 .................................... AACTAAAATGAGCACAAACCGCCCATGGTA 1408598 36 97.2 30 .................................G.. TACAGTGTCGCGTGGCGTGTCCTTGACGCT 1408664 36 100.0 30 .................................... GCGTGTAAAGTGAACGCCCTTTATCAAATG 1408730 36 100.0 30 .................................... CCAGTTTCCTTAATTGCGTTTGTTGATGCT 1408796 36 97.2 31 ......T............................. CAAAGGCTATCTCGTTAACCTCATTGTCAGT 1408863 36 100.0 30 .................................... GTCTAGCGCGTCGTTTATTTGGGAAACAGT 1408929 36 100.0 30 .................................... TTTCTAGCAGATGCAAAAAGGGTGCTGTAT 1408995 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 10 36 98.0 30 GTTGCGGCTTGACCGCATTTTCTAATCTGTTACAAC # Left flank : TTTTCCCTGAAAATCTAACAATATTTTCACATAAGAGCACGATCAATTTGCTTATCTGTAAGGTAGAAAAATATCGAACTTTCATCGTTCAGGCAAAGGTGTTTTAATCCGCAAACGTGAGCATCCTATCAAAGCGACATCGGAAATTTATTCATCAATCACTGAACACGCAATTCCGGATGCCGACTTTTTAAAAATCAAAATGGCTATATTTCCGCATTCAATTATTATGGCAGTAAACATTGGCTAAGCGATCTGCAAAAGACACGCTCGGAAGTAATATTTATAACGACTTTACTTCAAACGATGCCGGAAATTTTGAGAAAGCGGAAAAAGAAAAATTTGACGACACCGTTGGGTCGCCCCCCCCAACACCAAAAAGGTGGCGTTCCGGATGGCTCGGTGTCCAAGAAAAATATAATGTAATTGAAAAATAAATTCAACAAACAGTATCAAGAAGTAAGTAAAGATTGATTATGACGAAGTTTTACCGGCGTTCC # Right flank : CCGATGTCCACTTAACCCTTTGTTTTATAAGGTTTAAGTGGATATTTTTTTTAAAAAAATGCTATTTTTCATTAAAATAACACCGGTAAATTTCGATTTTTTTGACGTGTCATTCACGTTTTCCCCGAAAATCTAACAAGATTTTCACATTGCTTGGCAATTCTGAAAGGTGGTTAAATCTCTCACCGTTTGAAACACCTTGGAACACCTTTAAAATTAGCATTTGCTAACAACGAACAACCTATAATCAGGCCTTATCGTCTCTGCTGTTCCAGAAGCCACTTATATTCCCGATGAAATCGGGAGATTGACGATGATGAGCCAGTATCAAAGCAAAAAACGGGTAACCGATATTCGATTGAGAAGAAACCTGCCGCAAGCCACGACAATTCACGAAGTATAAAGCGCACAAATCACGGTAAAGGCAAGCAAAAGAAGTATATCACAGAAAGGAAAGTAACACGCCGGGGGGCCGGAAATGCAATCCCCACATCGCTAAA # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCGGCTTGACCGCATTTTCTAATCTGTTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTTGCGGCTTGACCGCATTTTCTAATCTGTTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.80,-1.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,1.05 Confidence: MEDIUM] # Array family : II-C [Matched known repeat from this family], // Array 3 1409647-1410144 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACFSP010000001.1 Bartonella sp. W8152 NODE_1_length_1574962_cov_203.957164, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 1409647 36 94.4 30 A......T............................ GTCTCGTGCATACGGGAACGCAAATCTATC 1409713 36 100.0 30 .................................... TTTGGCGGTTAGTGATGCGGCGTCGATTGA 1409779 36 97.2 30 ..............C..................... TTTTCCATCAGGCGCGTAGCGACTGTGGTA 1409845 36 100.0 30 .................................... GGCAGGGGAAAACAGAGAAGCCTAACGATG 1409911 36 100.0 30 .................................... AGCGGACAAACCGGCGCCAATGTCATCAAA 1409977 36 100.0 30 .................................... CAAAGACAACAATCCGTTTGAGTTTTGGTA 1410043 36 97.2 30 ..............C..................... ATCTGGTGATGTTCCCGTCAACACGCGGCA 1410109 36 97.2 0 ...........G........................ | ========== ====== ====== ====== ==================================== ============================== ================== 8 36 98.3 30 GTTGCGGCTTGACCGCATTTTCTAATCTGTTACAAC # Left flank : GTTTTCCCCGAAAATCTAACAAGATTTTCACATTGCTTGGCAATTCTGAAAGGTGGTTAAATCTCTCACCGTTTGAAACACCTTGGAACACCTTTAAAATTAGCATTTGCTAACAACGAACAACCTATAATCAGGCCTTATCGTCTCTGCTGTTCCAGAAGCCACTTATATTCCCGATGAAATCGGGAGATTGACGATGATGAGCCAGTATCAAAGCAAAAAACGGGTAACCGATATTCGATTGAGAAGAAACCTGCCGCAAGCCACGACAATTCACGAAGTATAAAGCGCACAAATCACGGTAAAGGCAAGCAAAAGAAGTATATCACAGAAAGGAAAGTAACACGCCGGGGGGCCGGAAATGCAATCCCCACATCGCTAAAAGCCATGGCGTTCCTTACTCGGCGCAGCTTAAATATAACAGAATAAGAGGAACAAATCAATGAATAACGTAATTAAGTAAGTAAAGATTGAGTATAGCGACGTTTTATCAGCGTTCT # Right flank : CCGATGTCCACTTAACCCTTTGTTTTATAAGGTTTAAGTGGATATTTTTTTCAAAAAAAATGCTGTTTTCATTAAAATAACACCGGTAAATTTCGATTTTTTTGACGTGTCTTCCACGTTTTCTCTAAAAATCTAGCAAGATTTTCACATAAGTGCACGATCAATTTGCTTATCTGTAAGGTACACAAAATATCGAAATTTCATCGTTCGGGCAAGGTTGTTACGATCTTCCTAAAACAGGATAAGCCGGCATGTTCGGGCTTTTTTTTTAGAAAGACCTCAAGCCATTTTGTGAACCGCTGTTTCCATTTTTTAGGAAAGCTTTTGATAATATACTGGTGAATGCGTCGTGCTACTTAACAAGAAGTCCGCTTTGATAAAGCGGACTTTAAGATAGCGTGATAAACCGTAAGACAGCGAGTTAAACCGGTTTGTCGCATCCGTTTTGCTTTTGTCAATTTTTAAGCGTGGCTAAAATGAAAAAGCCTGCACCACTCGGC # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.98, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCGGCTTGACCGCATTTTCTAATCTGTTACAAC # Alternate repeat : GTTGCGGCTTGACCCCATTTTCTAATCTGTTACAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTTGCGGCTTGACCGCATTTTCTAATCTGTTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.80,-1.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.78 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 4 1412930-1413364 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACFSP010000001.1 Bartonella sp. W8152 NODE_1_length_1574962_cov_203.957164, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 1412930 36 94.4 30 A.G................................. GTGTTGCCATACATCCTTAACGCGTATCCG C,C [1412933,1412936] 1412998 36 83.3 30 .....................T.........GTGTT CAGGCTGCAATATTGGCTTTCTTGACCATG 1413064 36 75.0 30 C....A..C...T........A..GG...A..T... TTTCATTAGCATGTGTTAGAAAGGTGTTGA 1413130 36 100.0 30 .................................... GTTGAGGCGTTAGGAAAAGTCGCGGCTGTA 1413196 36 100.0 31 .................................... TCTCGAATGTATTCGATTTTCCACGTGTTTT 1413263 36 100.0 30 .................................... CGCCCGTATGGACGCCGACGAAGATGATCC 1413329 36 97.2 0 ...........G........................ | ========== ====== ====== ====== ==================================== =============================== ================== 7 36 92.8 30 GTTGCGGCTTGACCGCATTTTCTAATCTGTTACAAC # Left flank : ATAAATGTAGACACACTACGCCTTTGGCCGATTTATGCAGAAGTTTTCTTCACTTGTCAATCGACTAGCTTTAAAAAACCGGAAAGCTTTTTGTGAATTAACCGGCAATCATGGCAAAAAACCGGAAGCTCTCTAAAACAAATAATTTTTTGTCGGGTAAACAGCAATAGGCCGGAAAAACTCTGATGCGTTTTAAAAAACGCGGCCCGGGCCCCGCGCAAAAATGAACAAAACAAAGTTGAAATGGTGAGCGGAATTTTCCAAAAAAACAAAAAAGGGGCTTGTGTCAAAGCCAATTGCCAGCTATTTAGCCGCTAACGCGCTCGGATGTTTGTTTAACAAATAAAGTTCGCCTTTTATGGAGAGGTGGCTGAGTGGTTGAAAGCACCGCACTCGAAATGCGGCATAGGGGCAACTCTATCGGGGGTTCAAATCCCTCCCTCTCCGCCATGATTTTCCTTTTCTTTGAAACGACTTCTTTAGTTATGCGCCCGTTCGGA # Right flank : CGATATCCACTTAACCCTTTGTTTTATAAGGTTTAAGTGGATATTTTTTTAAAAAAAAATGCCGTTTTTCATTAAAATAACACCGGTAAATTTCGATTTTTTTGACGTGCCTTTCACGTTTTCCCTGAAAATCTAACAAGATTTTCACATTGCTTGCCAATTCAGAACCGATGTTCGTCGCTCACCGCTTGGAACACCTCCTGTAATTGGCATTTGGTATCAACGAGCAACCTATAATCAAGCCTTATCGTCTCTGCTGTTCCAGAAGCCATTCATATTCCCGATGAAATCGGGAGATTGACGATGATGAACGACTATCAAAGCAAAAAACGGTTAGCCTGCATTCGATAGAGAGGAAACCTGCCGCAAGCCACGACAGTTCCTGAAGTATAAAACAAACAAATTGCGATAAAAACCAGAAAAAGAAGTATATCACAGCACGGAAAGTAACACGCCGGGGGGGCCGGAAATGCAATCCCCACATCGCTAAAAGCCATGGC # Questionable array : NO Score: 5.75 # Score Detail : 1:0, 2:3, 3:0, 4:0.64, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCGGCTTGACCGCATTTTCTAATCTGTTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTTGCGGCTTGACCGCATTTTCTAATCTGTTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.80,-1.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,1.05 Confidence: MEDIUM] # Array family : II-C [Matched known repeat from this family], // Array 5 1413972-1414604 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACFSP010000001.1 Bartonella sp. W8152 NODE_1_length_1574962_cov_203.957164, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 1413972 36 100.0 30 .................................... CTGCTGCTGTTGCTGTTGAGCAAACTGTTG 1414038 36 100.0 30 .................................... GCACCACGCAGGCGACATCGATGATCGCAT 1414104 36 100.0 31 .................................... TCAAAATTAAAACCAAAGATGCCGGCGTTAT 1414171 36 100.0 30 .................................... GCAACCATATATCGAGCATTTTACCAAAGA 1414237 36 100.0 31 .................................... GAGCATCAAGACCATTCCGCCAAGCACTATC 1414304 36 100.0 30 .................................... AAGGATTGCCATTGATACCCCTGCCTCTAG 1414370 36 97.2 30 ...................................T GTGCTTGTTATTGACGAGTCCCATATGATA 1414436 36 100.0 30 .................................... GCTGGTCAATTCCAGCCATCGGGGCCATCA 1414502 36 100.0 31 .................................... TTTGAAGAGAATTTTTCGCGGGGGATCGCGC 1414569 36 91.7 0 ...............................G.C.G | ========== ====== ====== ====== ==================================== =============================== ================== 10 36 98.9 30 GTTGCGGCTTGACCGCATTTTCTAATCTGTTACAAC # Left flank : GCCTTTCACGTTTTCCCTGAAAATCTAACAAGATTTTCACATTGCTTGCCAATTCAGAACCGATGTTCGTCGCTCACCGCTTGGAACACCTCCTGTAATTGGCATTTGGTATCAACGAGCAACCTATAATCAAGCCTTATCGTCTCTGCTGTTCCAGAAGCCATTCATATTCCCGATGAAATCGGGAGATTGACGATGATGAACGACTATCAAAGCAAAAAACGGTTAGCCTGCATTCGATAGAGAGGAAACCTGCCGCAAGCCACGACAGTTCCTGAAGTATAAAACAAACAAATTGCGATAAAAACCAGAAAAAGAAGTATATCACAGCACGGAAAGTAACACGCCGGGGGGGCCGGAAATGCAATCCCCACATCGCTAAAAGCCATGGCGTTCCTTACTCGGCGCATCTTAGATATAACAGAATAAGAGGAACAAATCAATGAATAACATAATTAAGTAAGTAAAGATTGAGTATAACAAGATTTTGCTACCGTTCT # Right flank : GCACAATCCAAAATCATCCTGTCAGGCAACCACTAGCCGCGCATTGACAACACGTCAGATGGTATTTAGCGACGCGTGTTTTTCGTGCCTTTGGAAATCCGAGTCCCAAAAGAAAACGTTGGCCATACTTTGCCAAACAACAACACGCGGCGATTTTGGAAAGTAAAAAGGGCACGACTATTTGTAAAGGCATTCGCGTCAAGTCGGAGTTTGTCCAACCCGCAGGCTGTGAAGCGAACACATGAAGAGAGTAACTTCAGTATCGCTCCCACAAATAGCGTCCAAGGTTAGCAATTTCCTGATTATTTTGCATGTCGCGTGCCGACAGAATGCGATCGTTGCGAAAGCTGCGCATGGCATTGCGGACAGTGCAAAAAGCATCAATATAGATTGTTGCTTTGCCGGCTATCCGATAGATATTCAGAGGCTCTATTACACGCTCGGTTATCACGCCGTCCCTGTCAACATATTCAATCATAAACTGAATATTATCGGTGATG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCGGCTTGACCGCATTTTCTAATCTGTTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTTGCGGCTTGACCGCATTTTCTAATCTGTTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.80,-1.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.37 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 6 1416086-1416915 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACFSP010000001.1 Bartonella sp. W8152 NODE_1_length_1574962_cov_203.957164, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================ ================== 1416086 36 97.2 30 A................................... TTTGCAGAGCAACCAGTTCCGCCATTTCTT 1416152 36 100.0 30 .................................... AACCTTAAGCATAGAGACGGTTATCATTTT 1416218 36 100.0 30 .................................... CACCCAGTCGATGTCTACCAAGAACGACGA 1416284 36 100.0 30 .................................... CGGCGGCGAGAAAACTTGCTTCAAGATCAA 1416350 36 100.0 30 .................................... TAGCGTCGGTAATTGATGCCGACAGTCATA 1416416 36 100.0 30 .................................... TTATAATGACGGCGGCGGCTTTGCATCTTT 1416482 36 100.0 32 .................................... TTGCAAAATATTCGGCAAGTTTGTCGCGGCCG 1416550 36 100.0 30 .................................... TCAGTTGCAAATAGTGTCTTTGTAAAATTC 1416616 36 100.0 30 .................................... GCCCTGCCACGAGTGGCGTAGGTGCGAGTA 1416682 36 100.0 30 .................................... GGGATTGGTCTTCACTTCCTCGATCATTCT 1416748 36 100.0 30 .................................... AGCTTTGGGAATGTTGAACAATAGCGTTAA 1416814 36 100.0 30 .................................... CCCACTGTTTCACAGCACCAAACGAATAAT 1416880 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ================================ ================== 13 36 99.8 30 GTTGCGGCTTGACCGCATTTTCTAATCTGTTACAAC # Left flank : TTTCCTAAAAATCTGACTATATTTTCACTTAAGTGAACAATCAATTTGCTTGTCCCTTAAGGCAAAAAGAATATCGAACTTTCATCGTTCAGGCAAAGGTGTTTTAATCCGTAAACGTAAGCATCCTATCAAAGCGACATCGGAAATTTATTCATCAATCACTGAACACGAAATTTTGGAAAACGAATTTTAAAAAGTCAAAATGGCTATGTTTCCGCATTCAATTATTATGGCAGTAGACATTGGCTAAGCGATCTGCAAAAGATACGCTTGCAAGAGCTACTTATAATGACTTTACTTCAAACGATGCCGGAAATTTTGAGAAAGCGGAAAAAGAAAAAATTGACGACACCGTTCGGTCGCCCCCCCCAACACCAAAAAGGTGGCGCTCCGGATGGCTCGGTGTCCAAGAAAAATATACTGGAATTGGCAAATAATATCAACAAACAGCATCATGAAGGAAGTAAAGATTGAGTATAATGACATTTTTCCAGCGTTCT # Right flank : CCGATGTCCACTTAACCCTTTGTTTTATAAGGTTTAAGTGGATATTTTTTTTAAAAAAAATACTGTTTTTCATTAAAATAACACCAGTTGGGCGGGATTTTTTTGACGTTTCCTACGTGCTTGATCGGAAAATCTTACGATATTTTCATATTGCTTGTCGGTAAATTGGAAAATATAGATGTTCCCTCGTTCAGGCAAGGAGGATTCGATCTTCCTAACATAAGATTCGAATTGTTCTTTTCCGTTACAGAAACGCAGATAATTCGAGAACTGGCTCATCTCGAAGCCAATATCCAATAAAAATTGTCTGAATTTCGTTGCGTCGTGGCGCTGTTTTCTTGTCTCTACCGGTAAGTCGAAAGTAACTCATATCCACATTAATCGATACCCGCTTAAATGTTTAGGACCCGATGTTGCACGCTCAAGATAGGCTGTCATAATTGTCATTTTCTCCCCATGCGTCATCAATTTGGACCGGATCGTTTTGCAAAGAAAAAATT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCGGCTTGACCGCATTTTCTAATCTGTTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTTGCGGCTTGACCGCATTTTCTAATCTGTTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.80,-1.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [65.0-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,1.05 Confidence: MEDIUM] # Array family : II-C [Matched known repeat from this family], //