Array 1 183856-184287 **** Predicted by CRISPRDetect 2.4 *** >NZ_PPWY01000003.1 Pasteurella multocida strain HNF02 Contig003, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 183856 36 100.0 30 .................................... CGAGCGAGTAAAAACATCATTTTCTCGTAC 183922 36 100.0 30 .................................... TTTACATCAATATGTTCTTTAGCGTGGCAA 183988 36 100.0 30 .................................... AACCCCTGCATTGTAGGGTTAAGCTTTCCT 184054 36 100.0 30 .................................... TAAACCACTAACCGATAGCCAATTATTAGC 184120 36 100.0 30 .................................... AAAGGTGTAAGGCTTGTTGAGTATTCTAGA 184186 36 100.0 30 .................................... GAAGTGCGACAACACAAGCCCATGATGCAG 184252 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 7 36 100.0 30 GTTGTAGTTCCCTCTCTCATTTCGCAGTGCTACAAT # Left flank : CGCTATGTTTTTTTTTAAGCTTGTCGACAATTTTGTCTGAAATGATTAATTTCATATCCATTTCGGGTACCTATAAATTTTTCATAAATATTATTATTTGCTATAAACATAAATCCTCCGCATATTGTGTATATACAATTGTATATACAATAAAAAAAAAAGTCAACCCTTTCTTAGCAAAAAAATATTACTTACCTTTATTCAGGTGAACGGGTGACAAATTATTAAGCAATTTCTTTAAAAGATGAGGGGAATTTACACACCACTCACAAAACTGCGTTTTGCCTTTAAAGCCAGTAATATCAAGGGATTGTAAAAAAGCTGGTTAAAAGATGCGCGTTTTTTTTGTGGTTCAAATTTGAACCAAAAAATAGCACAAAAATACAGCTAAACAGGCGGTTGGATTTGGAGTAGACCCGTTAAAAATGAAAAAAGACTACGCTATTTTTCAATTTTAACGTGCCAAGATTATACCAGTTTTTAGAAAAGATATTATGTCA # Right flank : TCTCGTGTCCCTTATCCCTTGTGGCACAAGGGATAAGGGCGTTTTTAATGCTCAAAAATTACTTGAATTCACGATATTAAGCATTCTATTTTTAGAAAATTTTTCTTAAAAAGTCATTGATTTTGTCTGACTGGGATAACATCTGTTGTATGTTACCCCTGGTTCTGAGATGCGCTAGGCTAAAATAGAGAATAGTCTTTTTGTCTATTTTTATAGAATAGGTAAATAGTTTACTTAGAACAGCAACATTTGATTTGCGTTTACTTTTTTCTCTTGAAGTCTCAATCTCCCCAAGAGTATTTTCATTCCTGCAAATTGCTTTTCTGTCACTTCTAAACAACGTATTGAACCTTCTTCAGGGAGGTGTTCACTGAGCCGTTTATTATGCTTTTGCATGGAGTCTCGACCTCGAATAATTCTAGCATATACAGAAAGTTGTAACATTTGATAACCATCTTTTAATAAAAATTGACGGAATTGATTTGCTGCTTTACGTTTTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGTTCCCTCTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTTGTAGTTCCCTCTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [73.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 15998-19327 **** Predicted by CRISPRDetect 2.4 *** >NZ_PPWY01000004.1 Pasteurella multocida strain HNF02 Contig004, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 15998 28 100.0 32 ............................ TTTTTAGTTTGAATTTAAGGGCTTGTCCCTTT 16058 28 100.0 32 ............................ ATAGATGAGGCAGAAGCTAATGCAACGGTACC 16118 28 100.0 32 ............................ AGTCTCGGTTTATCACGTCTTTTTTTCTGCGT 16178 28 100.0 32 ............................ TCATCAGTGGATTAGCGAGCGTTGCCGGCACA 16238 28 100.0 32 ............................ ACATTCCGACTATGTCTTCATAACCGCATGAA 16298 28 100.0 32 ............................ CACGGCGGGAAGTAGTATTTTGAATCTTTCTG 16358 28 100.0 32 ............................ ATGCGAATTAAGTTTAAAAACAACTCGTCGAT 16418 28 100.0 32 ............................ ATTAATCAAATGCTTACCAAGGCTACTACTAA 16478 28 100.0 32 ............................ GAGCAATTCACGTTGTGCATAACGCACGTTTA 16538 28 100.0 32 ............................ GTCAGATATTTTTACAAGAATGCCTGCTTGGA 16598 28 100.0 32 ............................ GCACTTTGTGCATCGGCTTTTTTATTGCTCCG 16658 28 100.0 32 ............................ AATCTCTAATTGTTCTTTCCGCTCTGTCATTT 16718 28 100.0 32 ............................ GAACATATCCAATTTTAATTTGCTGATTTATT 16778 28 100.0 32 ............................ TTCCCAATTCGAGTGGTATTGGCTTGGTAAAT 16838 28 100.0 32 ............................ GTCAAGTGTTTGAAAATATGCTCTACGCCTAC 16898 28 100.0 32 ............................ GCACTTGATCCGCCACATCCTGCGGAATGGTT 16958 28 100.0 32 ............................ TAAGCTTGTGGCAGTCGGTGTGCAAGTGCCAG 17018 28 100.0 32 ............................ GGCTGGATCATAACGCCCACCGTTACCCGTGT 17078 28 100.0 32 ............................ ATTTTGTCTAAAATACCAATCACAATGTCGTG 17138 28 100.0 32 ............................ TAAAACATACCGATGGCTTTTCATCTCTTGAC 17198 28 100.0 32 ............................ GCCATTTACTCGACGAGTTGCCTTTTCTACTG 17258 28 100.0 33 ............................ AGAAATGCTAAAAAAAATGTTAGATTTTTACAA 17319 28 100.0 33 ............................ CTGAACGCGTTTATTTTTTCGTGAATAATAAAA 17380 28 100.0 32 ............................ GATTTGCGAACTTGACAACGCCAACCAGATTT 17440 28 100.0 32 ............................ ATTTCCCATACGATTAGCATAAACTCGGTTAG 17500 28 100.0 32 ............................ ACACCGACAACCATCGCATCTGATGCTTATCA 17560 28 100.0 32 ............................ GCGGTATGTCGTCAGCCCAATTAAAAAACTGC 17620 28 100.0 32 ............................ ATTATTTCGTGCGTATGGGCTCCAGCCACCAC 17680 28 100.0 32 ............................ ATAGCGGCTGAACTCTCAAAAGATTGACCGAG 17740 28 100.0 32 ............................ TAAACAAACAAGCTAGAGATAATCCCCAGTTA 17800 28 100.0 32 ............................ AGCTGGGCGGATTAGAGAATTTACGGTTTAAC 17860 28 100.0 32 ............................ GTTTGAGAAAAAGGTGCTTTGCTCGACTTGTT 17920 28 100.0 32 ............................ AACCGATCCAACTCACCATGGAGGAAGCGAAT 17980 28 100.0 32 ............................ AAAAACCGATCTTGTGTACAAGTATCAAAAGA 18040 28 100.0 32 ............................ CACTATTATTAATAAGTTGTTGATGTTCTGCG 18100 28 100.0 32 ............................ TTGGTGATTCGTACAGTTGAAATCAACGGCAC 18160 28 100.0 32 ............................ CGACGGAACACCGTTTGCAGCCCGCAAACCGC 18220 28 100.0 32 ............................ AATTTCAATCATCTCGAAAATATCTTTACAAG 18280 28 100.0 32 ............................ TAAACAAACAAGCTAGAGATAATCCCCAGTTA 18340 28 100.0 32 ............................ AGCTGGGCGGATTAGAGAATTTACGGTTTAAC 18400 28 100.0 32 ............................ GTTTGAGAAAAAGGTGCTTTGCTCGACTTGTT 18460 28 100.0 32 ............................ AACCGATCCAACTCACCATGGAGGAAGCGAAT 18520 28 100.0 32 ............................ AAAAACCGATCTTGTGTACAAGTATCAAAAGA 18580 28 100.0 32 ............................ CACTATTATTAATAAGTTGTTGATGTTCTGCG 18640 28 100.0 32 ............................ TTGGTGATTCGTACAGTTGAAATCAACGGCAC 18700 28 100.0 32 ............................ CGACGGAACACCGTTTGCAGCCCGCAAACCGC 18760 28 100.0 32 ............................ AATTTCAATCATCTCGAAAATATCTTTACAAG 18820 28 100.0 32 ............................ ATTGATTGAGAGTGGATATGTTTTCTCACCGA 18880 28 100.0 32 ............................ TTTCAGTCTCTGACCGCCAGCATAGACCCAAC 18940 28 100.0 32 ............................ AGAAGAACAAGAAAAGCAGTTGAAGAAAAAAG 19000 28 100.0 32 ............................ TAGTAAACGCAATGAGCCTGCCGCCACAAGTG 19060 28 100.0 32 ............................ TTGGATCGCCATACCGCTATTACCATTAATTT 19120 28 100.0 32 ............................ ATAAAGTTTCCCGCGCTAAAAAATCATATTAT 19180 28 100.0 32 ............................ GACCCCATTGGTCTAATTTCGCCCACGGGATT 19240 28 100.0 32 ............................ TTCCGCATATTCAACCGTATTATCTTCAGTTG 19300 28 96.4 0 ........................A... | ========== ====== ====== ====== ============================ ================================= ================== 56 28 99.9 32 GTTCACCATCGTGTAGATGGCTTAGAAA # Left flank : CAATTACACCAACAATTATTGCGATCTGGCTTATCAGATTATGCTTTAATTAGCGAAGTGAGTAAAACGCCGTTGCCTACCGAACACCGCAGTTATAGTCGAGTACATCGTAAAGGGCAAAGTGCCATCCGCCGTACCGAAAAACGCTTGAAAAGTCAGGGAAGATGGGATGAGTCCATCCGTGCAGACATGCAACAACGTCAGCAAAATGTGGCATTTTTCCCACATTGTCATTTAAAAAGTGCGAGCACTGGTCAACGTTTTATTTTGGCAGTGAAAGAGAACAGAATGCCACAATCTTGTGTTGGTGTCTTTAATGCTTATGGATTAAGCAATAGCGCAACTGTGCCTCACTTTTAATCGCATTGTTAACCCTTTTTTCTTATTTGGAAAGTTTTCTAATAAGATCAAAGGGTTATTGTTCTACCCTAAAAAAGGGTTTTCTTTTCAGATGTTCTTTAACAAATTGAAATATCCGAAGATATAACAAAATTCATTTA # Right flank : AACTCATAATCGGAAGAGAGCGAGTTCGAATCGTTCATTATAGACTAGATAGTGTAAACCCTCGCCGGTTTTTAAGACCGGTGTATCCAATGCCGTTAAGCAACCTCATTTAAAGAACAGAAAAAGCCCATTATGCTTATCAGAGAATGGGCTAGATAAAAGGAGAGATTATGCGCAAAACCCCTTATATTCCGTCTTCGGATTTGAAAACCATTATGCATTCTAAGCGGGCGAATATTTACTATTTAGAACATTGTCGCGTATTACTAAATGGTGGACGAGTGGAATATGTCACCGATGAAGGGCGAGAATCGCTTTATTGGAATATTCCCATCGCCAATACGAGTTGTCTTTTGTTAGGCAGTGGTACGTCGATTACGCAAGCTGCGATGCGAGAATTATCCAAAGCGGGCGTCATGGTGGGGTTTTGTAGCGGAGGTGGTACACCATTGTTTAATGGCACAGAAGCCGAAATTGGCTGTGAGTTTTTTAGCCCACAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACCATCGTGTAGATGGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: F [matched GTTCACCATCGTGTAGATGGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.00,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 503173-501088 **** Predicted by CRISPRDetect 2.4 *** >NZ_PPWY01000001.1 Pasteurella multocida strain HNF02 Contig001, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 503172 28 100.0 32 ............................ AAGTGAAAAGATAAAAGATAATCACCGTAGCT 503112 28 100.0 32 ............................ ACAAGTTTTATCTAAGAATTGGCGCATTTCTG 503052 28 100.0 32 ............................ CTCTTGTTTTTTCAATCTGATCGTTTTGTCAG 502992 28 100.0 32 ............................ AGCAGGCATAGAAAGATCTGGAATTAAATCTT 502932 28 100.0 32 ............................ TCTTTTTACTCGTTGTACTGAAATTTTTTATT 502872 28 100.0 32 ............................ AATCCCCCTAGCACGACGACATCACCACTTTT 502812 28 100.0 32 ............................ AAATGGCTATCTTTTAACAATATTGAAATAAC 502752 28 100.0 32 ............................ TTTTGGATCATCTTCTTTCACTTTAAAGCGGT 502692 28 100.0 32 ............................ TGCTTTTCCTTTCATGATTGTGATCTTAATCA 502632 28 100.0 32 ............................ ACTACATAAAATCACCGCCACAGTTGCTGTTG 502572 28 100.0 32 ............................ ACGTGAACCAGACTTAACTCTAAGAGTTGGAC 502512 28 100.0 32 ............................ TTTGCGCTGTCGGCGTCCTGTTTCTGTTTTGA 502452 28 100.0 32 ............................ AAGTTGTTATATTAAACATGAAGAAATGAAAC 502392 28 100.0 32 ............................ TGATGTGGGTGAATTGGTCGCAATAATACTCG 502332 28 100.0 32 ............................ TTTTGCACAAACAATTAGGTCACCAATCTATC 502272 28 100.0 32 ............................ TTTAACTATGCAGCAAGCGAAACCAAGGAAGA 502212 28 100.0 32 ............................ GTTTGCAATGTGCCAGTTTTAATACCGACCGT 502152 28 100.0 32 ............................ TCTTTTCTCAGGATTGTCTTTTAAATCCTGAT 502092 28 100.0 32 ............................ ACCAGAAGAACTGTATAGCGAAATGCTTTATT 502032 28 100.0 32 ............................ TGAATAACGTATTCAGACGGAATGCCACCTTC 501972 28 100.0 32 ............................ TGTGATTTTTACTCTTTCATTGGTTATTTTCT 501912 28 100.0 32 ............................ CACCTAATGGGTTTAATTGTCGCTGTGCGGTG 501852 28 100.0 32 ............................ TTCAAAGCTTTCCACCAGCTCTTGGCGTTGAC 501792 28 100.0 32 ............................ TTTTGTTGCGGCACCGCCACCGCAGAAAATGG 501732 28 100.0 32 ............................ GTTTTTTACTGAGCAAAGCGTCATTTTATTAA 501672 28 100.0 32 ............................ GTTTTGAGAACACCTTCAATCCACGGAATAAA 501612 28 100.0 32 ............................ ATTGCCGCCATTGTCTCGAACTCTTGCCCTGT 501552 28 100.0 32 ............................ ACTAATATTCACTTCTTTGGCTGTTGTGCTAA 501492 28 100.0 32 ............................ TTTGCGAGCAAAAAACCAGATAATTCCCGCAA 501432 28 100.0 32 ............................ TATCTTCCACATTCCACGTTATATCGATTACA 501372 28 96.4 14 ............G............... TCTTTGATTAATTC Deletion [501331] 501330 28 78.6 14 ....TGA.TTT................. TCTTTGATTAATTC GCTT [501314] Deletion [501289] 501284 28 78.6 14 ....TGA.TTT................. TCTTTGATTAATTC GCTT [501268] Deletion [501243] 501238 28 78.6 32 ....TGA.TTT................. GACTGGAGTGAGAATGTCGTCGAAAACTTACA GCTT [501222] 501174 28 96.4 32 ............G............... GCGTGCTAGTTTGTCTGCTGTTGCTTTCAAGA 501114 27 85.7 0 ....................T..C-..T | ========== ====== ====== ====== ============================ ================================ ================== 36 28 97.6 30 GTTAACTGCCGTATAGGCAGCTTAGAAA # Left flank : CATACAGCGCAGATACCTATTTGCACCGGATTGGACGTACTGCACGCGCAGGTAAAAAAGGCGTAGCGGTGTCTTTTGTGGAAGCCCATGATTATAAATTGTTGGGTAAAATCAAACGTTACACCCAAGAATTACTGAAAGCACGTATTATCGAAGGCTTAGCCCCTCGCACCAAAGCACCGAAAGAGGGAGAAGTTAAAACGGTCAGTAAAAAGCAAAAAGCCCGCATTAAAGCAAAACGTGAAGAGAAGCAAAAACAAGAGCAAAAGAAAAAAGTGAAACTGCGTCATAAAGATACAAAAAATATTGGTAAACGTCGCAAATCCAATACCCCCCCTGCTAACGCAGAATAATCACATCTAAATTGCTAACCCTTTTTTCTGGCTAGATTATTTATCTAATAAGATCAAAGGGTTATTTTTATGTCTAGAAAAAGGGTTTTTAACAGTTTGATCGGTTCCATACTTGATGAATAAAGGGATGTCGATTAGACTGTTTTA # Right flank : TGACTGTTGGTATATGACTAAAACAGTTGGATATGGGGATCGGTCTGTTAGCTTATATCGTGTTTAACGATAAAAGTGCGGTCAATTTTTGGAAAATTTCATCAGCTTCAATCTTATCCATACTCTCAGCAACGAGATAATGCTGGTTTTTGCCGTAGGAGCCTATCAGTTTGGGATCCGTGGCACCATAGAGAGTCAAGTTGGTTTTATCGAGTGCGGCACTTAAATGTGCCAATCCGGTGTCAACAGAAACAACAGCGCTGGCATTCACAATCTGCTGTGCTAACTCGGATAATGTGGATTTTGGCAAAATCGTTACAAGATCAAGCCCTTGGGCGATCCTCTCTGCACGCTGTTTTTCTTGAGAATTTGACCAAGGTACGTGAATTTGGATACCCTGTGCGGTCAGTTTTTCTGCTAATGTCCGCCATTGTCTGTCCGGTAGAAATTTATCTTGGCGTGTGGTGCCATGGAAAAAGAGGACATAGGGCATCGTTTGT # Questionable array : NO Score: 6.02 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:-0.11, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: R [matched GTTAACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //