Array 1 7185859-7186470 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP071091.1 Myxococcus sp. SCHIC003 chromosome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 7185859 36 100.0 34 .................................... TAGGGGATCTGAGGCGTCTCCTTGAACCCGTGAG 7185929 36 100.0 36 .................................... CATAGGTGTTCGTGCAGAGGGCGCCCCACACCGGGG 7186001 36 100.0 34 .................................... CAGGTGGTGGACAGCGTGGAGGAGCTGGTGGCAC 7186071 36 100.0 36 .................................... ACGTACTTGATCGCGTGGATCCGCAGGGGGTACTTG 7186143 36 100.0 36 .................................... GCTTGACCGGACGAGTACGGGTGGAACGGAGCGACT 7186215 36 100.0 34 .................................... TGTGCGCACGGGTCGATACGCCACGACTTCGCCG 7186285 36 97.2 38 ........................A........... CGGCACGTCCGCGCGGCGCGCGAGGCGCGGGCCACCCT 7186359 36 100.0 40 .................................... TTCCGCGACTCGTAACTGAGGGGCCGAAGAGGCTTCGCGT 7186435 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ======================================== ================== 9 36 99.7 36 CCGCCGCTCGCCGTGATGCCGGAAGGCGTTGAGCAC # Left flank : GCCTGGCGGCCCGGTGGACGACGCGGGCGAGGAGAAGACGCGGAGGCGTTCGAGGAAGCGGGGAGGGAGATGAGCGGGGGGCAGCGTCGCGGTCAGGTGGTTTCGGCTCCTTGCCGCGAGTGGTTGCGACAGGTCCGCGAGAGAATCGTATGGGGCCGCGAGGGTTGCGCGCGGCGTTGGCGTCTCGCGGGTGGCGGTGTGTATGGGGACGTCCATGGGGACGTGCGGGGTGTTGAGGGGCGCGAGTGTTTGGAGTTGGACTTTCAAGCACCTCCGCGTGGCGGGGGCTTGGGAGGGGAATCGAGGTGAAAAGCCGAGCCCTGGCGCGGGGTTGCTGCTCTTTGACAGGTGAATAGGTGCGTGAATGGGGAAATGCGTTGGAGTTTCGAGGGGTTGTGAGGTGTGGGAGTTGGGGTGGGTGCGGGTTGGCGCAAGGAGCGTGGGGGTGCTTGAAAACAGGGGGACAAGCAGGCGGAATCGTTCGAGATTCCAGGGCGGCT # Right flank : CTCATAGTCACGTTTATCGCCGCGCAGCATGTAGTGCCATTGGTGTAGCCCCCATTTCAATCGGACAGGTCCCAACGCATAGGACCAGCCTAGGAATGGAAGCGAAGACACACGAGGTCGAAGTCATCCCGCCAGCGCGACCAGGACGTCGACGACGATTCAGTGCGGACGAGAAGCGCCGGTTTCTGGAAGAGACACTGGTGCCTGGACAGAGCGTGTCCTCGGTGGCGCGCCGGTACGGGTTGTCGGCAAGCATGTTGTTCCACTGGAGGAGGCTGGTAGATGAAGGGACTATGTCCAGCCTAGGTGCAGAGGAAGCGGTGGTGCCCGAGTCCGAGGTGAAGCGACTCCAGGCGCAGGTGAGGGAGCTGGAGCGGCTGCTGGGCAAGAAGACGATGGAGAACGAGATTCTGAAGGACGCGTTGGAGCTGGCCCGCCCAAAAAAACATTCCTCGCAGCGCAGCTTGCCTCCCAAGGGCGGTATCCCTTGAAGGCCGTGG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCGCCGCTCGCCGTGATGCCGGAAGGCGTTGAGCAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.80,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 2 7187828-7188878 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP071091.1 Myxococcus sp. SCHIC003 chromosome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================== ================== 7187828 36 100.0 35 .................................... TTCACGACCCAGACATCATCTTCGAGAATCGAGTC 7187899 36 100.0 35 .................................... CGAAGGCCGCCGAGGAAGGCGAGCGCCACCCACGG 7187970 36 97.2 40 ............................G....... GGAAGGTAGAGCCACGTCACTCCCCCTCCAGCGGCAGCGC 7188046 36 100.0 40 .................................... ATGCCCTGGATGTGGAAGTTCCACGTGACGACTGGCTTCT 7188122 36 94.4 40 ...........A...............A........ CCCGGGTCTGTGTCAGACTCGGACGTCTCCAGGGCAGGAG 7188198 36 94.4 42 ..........T...........G............. CTGACGACCTTGCTGAAGGCCACCAGCTTCTCACCGCCCTTG 7188276 36 100.0 40 .................................... CGCTTGGCGGACTCCAATGTCGCTTGGTGGAGCCCACGCA 7188352 36 100.0 37 .................................... TGTCTCCAGGGTGCAAGGGAGCCAGATGGGGTAACGA 7188425 36 97.2 36 .................A.................. AACTTGTCGCCGTAGATTTCCTTGGAGTTGGCGAAG 7188497 36 91.7 33 ..........T..C.............A........ CCATCCAGCGACTTCGTCTCGGAGCGGATGACC 7188566 36 97.2 31 ...................................A TTGTAGACGATACCGTTGGGGTACGTGGTGG 7188633 36 100.0 34 .................................... TCATCAGCCAGGACACGACGGACCTCGGTTCCCT 7188703 36 97.2 36 ...................A................ AGGTGGCGGGTGGGGCCAATCTTCAAAAGGTGGTCA 7188775 36 100.0 32 .................................... GTCTCGCGGCCCCGCATATTCGCGGTAGCCAT 7188843 36 91.7 0 ............................GC..T... | ========== ====== ====== ====== ==================================== ========================================== ================== 15 36 97.4 37 CCGCCGCTCGCCGTGATGCCGGAAGGCGTTGAGCAC # Left flank : GAACGGGGAGCGGGTCCAGGTGGCCTTCTCACTGGACTGCTGCGACCGCGAAGCCATGCGCTTCGTGGCCACCACGGGTGCGCTGACAGGCGAACTGGTGCGGGACCTGATGGCCGAGACGCTGGAGTACCGGTTCGGAGCAGGGAGCCGAGTGACGCCGCACCCCATTGAATGGCTGACCGACAACGGGCCCGCCTACACGGCCCTTGAGACGCGCGCATTCGGCGGCTGCCTGGGGCTGCTCATCCGAACGACACCTGCGTACTCACCCGAGAGCAACGGGATGGCGGAAGCCTTCGTGAAGACCTTCAAGCGCGACTACGTCTACCTGGCCCGCCTTGAAAGCGCTGAGGCAGTCCTCCGACAACTGCCCGCGTGGTTCGACGACTACAACCACGTGCATCCTCACAAGGGGTTGAAGATGCGGTCCCCTATCGAGCACCGGCGCGCAGCATCACCTCACTGACCGTGTCCGATTTGACGGGGGCAACTCCAGCCAT # Right flank : CCGCTGAACAACTGGGAAAGGGATGGGCACGCCGCTGCTTCGAGGCCCTCTCCACTGCGCCCGATGCTCGTGACGCCCCGGGCTTCATCATCGCCCTCTTCCGCGTAGCGGCATGGGACGCAGGCGCAGTGGGCATGACCACCCACCGGAAACCACGTCAGGCGCACAGCTCCACTGTCGCCACATCCCTGTCCGGACGGGACCCCCGAAGAAAAATCACAGGGCCGCGAGGGATGCGCGCGCGGTTGGCGTCTTCCTCGGTGGACATGTGGAACACCGAACCTCCATTCATCGAGCGTGACCCACCCGAGAGCCTCGGGCCTGGCGCTTCACGGGCGCGAGATGCCCGCGTTGTCCATCCCCTCGGGGTGGCATCGGCTTTCCGCGCGCGTTGTCGCTCAATGACCTTCCAGCCCGAGGGTTCTGTCCGCCTCGCGCGACGACGTGTCCTCCGTCATTTCCAGCGCCTCCTCGGTGAGGCCGTCGCACGCCCCTGCCGT # Questionable array : NO Score: 5.89 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.76, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCGCCGCTCGCCGTGATGCCGGAAGGCGTTGAGCAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.80,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [3-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 3 7200939-7205585 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP071091.1 Myxococcus sp. SCHIC003 chromosome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================= ================== 7200939 36 94.4 37 ..A.........C....................... TCAAGTCTTCTTTCTGTAGAAAATCGTGAGCGGGCCT 7201012 36 97.2 35 ..A................................. CGGTCGTTGTCCGTGAAGAATTCCCGCCAGTACTC 7201083 36 94.4 35 ..A.........C....................... GCCGCAGAGCCCCCGGATACACCGGCCGCAATCAA 7201154 36 94.4 34 ..A.........C....................... CTGACGCGGGTGATGTCGCCAATCTTCGCTCCGA 7201224 36 94.4 34 ..A.........C....................... GCGGAGGGCGCGGCAATACGGCCTGCGCGAGGGC 7201294 36 94.4 40 ..A.........C....................... AACAGGTACACGGGACTGAGTAAGGAGGAGATGGCCGGGA 7201370 36 94.4 33 ..A.........C....................... CAGGGCGGTTTTCAGGTCCGTCCGCATCTCTAG 7201439 36 100.0 37 .................................... CGGCGGGCCGCTTCATCGACCGCTTGGACCCATCCAT 7201512 36 100.0 37 .................................... CGCTGCAATTGCGGCTGTCGTTCCATGCGCAGGTCGA 7201585 36 100.0 36 .................................... CGTCGGCGTGGTCGGCAGCATGTTCTGGTACCTGAG 7201657 36 100.0 36 .................................... TGGAGGCTGGTGACGGAGTGGGTGCCGCTGCGCTGG 7201729 36 100.0 37 .................................... AGCAGAACGTCCATCACCGCGATCACCGCAAGGAAGA 7201802 36 100.0 34 .................................... ATGAGCGTCCAGTTCATCGTGCTGTCTCCCGAAG 7201872 36 100.0 38 .................................... AGCCGAGAGAGGACAGCTTCCTTCCCTTCGGTGACGAC G [7201889] 7201947 36 100.0 35 .................................... CGCCGAGAGCCGGAGCCAGTGCTCACCGCAGACGA 7202018 36 100.0 35 .................................... CACGAGCAGGCCAATCCAATCGTCGCTCTGCGGAT 7202089 36 100.0 37 .................................... GGCCGGGGGCTTTTTCGTGTCCGGAATTATAGGTAGC 7202162 36 100.0 35 .................................... CCCAGGCCCGGGTCGGTGTGAGCGGCGAGCCAACG 7202233 36 100.0 34 .................................... GAGGCGGAAGCCAGCGGCACGGCGCGCCGGCATT 7202303 36 97.2 37 ...........A........................ TCACACATGAGCGCCCAGTTCCAGGCCGCGTCCTCCG 7202376 36 100.0 36 .................................... GTCATTCGCTGGGTCAGAGGCCCCAACGCGAAGCCC 7202448 36 94.4 40 GT.................................. TAGTAGAACTTGCCCTGGGGGCTGGACATGGTGAGGAGCG 7202524 36 94.4 39 ...C...G............................ AAGAACTGTAGACTCATCATCCGAGGTGACGAAGCGCCC 7202599 36 100.0 37 .................................... ATGACCCGGCGCGCGGTGAGCTTGCGGTCGTACCGCT 7202672 36 100.0 35 .................................... TTCATCATCCCGACGATGCGCTGAACGTTGCTCCT 7202743 36 100.0 36 .................................... CATCCCTCCCTTCACGGGGGAGGTTCACGGCGAGCC 7202815 36 100.0 35 .................................... CCATCTCCAGCTCCGGGTGCTTCTTGAGGAGGCTG 7202886 36 100.0 36 .................................... TGACTCCCACTCCGGCGCACTCACCGCGGATATCCG 7202958 36 100.0 36 .................................... CCGTGCCCTCTTGGCCTTCTTGCTCCGAGTTTCTTT 7203030 36 100.0 37 .................................... CGTTGAGGGTTGCTTGTCGTGCGCGCTGCCGACGGCG 7203103 36 100.0 36 .................................... TACCCTTCGTACCGGCCTTGGGAGAGGGCACTCTGC 7203175 36 100.0 37 .................................... CCCGCGCAGCACTTCAAGGACGTCCGCCAGGCTGATT 7203248 36 100.0 33 .................................... TTGCCAGCAATCCCCAGGATGCTTGACGTAATG 7203317 36 100.0 35 .................................... TCCTACTTGACCGCCACCTTGAAGCTCATCGTGGG 7203388 36 100.0 39 .................................... GTGGTCCACCTGCTGCAGCACGGGACGGTCCCCGCTGAA 7203463 36 100.0 41 .................................... GAGCAGGGACTCATCCGCGAGTACATGGGGCCAGATGCGGT 7203540 36 100.0 41 .................................... CTGGCGACGGCGCTCGGCATCCCGCTGCCCCCGAGCCCGGA 7203617 36 100.0 37 .................................... ACGGGCGGAGACGGCAGGGTGTGAAACGACTGCATTC 7203690 36 100.0 35 .................................... ACGAGGAGGGGCCTCCCCACCCAGCCGTCCGTCGC 7203761 36 100.0 35 .................................... CATCACGTCTCCCCGAGAGCAACCTGAGAGTGTTT 7203832 36 100.0 34 .................................... CTCTGAGCGGCCAAGACGCGCCACAGCCCTTCGG 7203902 36 100.0 33 .................................... ACGCGCGTACTGGTGGGCATCATCTGCCCGGTG 7203971 36 97.2 37 ..........................A......... GGCAGCACGTCGTAGCCGCTGTACCACCCCCCGTTGC 7204044 36 97.2 37 ...............................G.... ATGTGGCTCTTGTTGGTGGACTGCAGGGTTGGACTAC 7204117 36 100.0 36 .................................... TTGTGTTCTGCATGAGTACGAATTCCCAGACGCGCG 7204189 36 100.0 35 .................................... CCCGAGTGGGCGTTTGCGACGGCCGGCTGGTTCTG 7204260 36 100.0 36 .................................... AGGCCCTTGTAGCCGGTCACCCACTGCGCCGACTTC 7204332 36 100.0 36 .................................... AGGCCCTTGTAGCCGGTCACCCACTGCGCCGACTTC 7204404 36 97.2 37 ......A............................. GGGGTCTTCGGCGTCGACGTGCGGAGCTCCTGGATTC 7204477 36 100.0 34 .................................... ACGCCGAAGAGCCGGAGGTCCACGCCAGCGGCCG 7204547 36 100.0 34 .................................... CCAGCACGCGCGGCCTTGTAGAGCGCCAGATGGA 7204617 36 97.2 37 ....A............................... TTGACGTGCGCGACCTGGTGCTCCGCAGTGATCTGCT 7204690 36 97.2 36 .........................T.......... GACAGGGAGCATGTGGGCCACGTTGTCCGTGAGCAC 7204762 36 100.0 34 .................................... AAGCGCCACATGCTCACCAAGGCGCTCGAGCTGA 7204832 36 97.2 39 .........................T.......... TCAATCTGTTGCTGGCGCCCCTGGTTGACGCGGTCCACG 7204907 36 97.2 33 T................................... TGGTCAGGGAGGGTAGGGCTACTCGGACGTGCA 7204976 36 100.0 34 .................................... CAGCCCGCGGCGTCCGGTGGGTCGGTTCGCTGGG 7205046 36 97.2 34 ......................G............. CAGCCCGCGGCGTCCGGTGGGTCGGTTCGCTGGG 7205116 36 100.0 34 .................................... CAGCCCGCGGCGTCCGGTGGGTCGGTTCGCTGGG 7205186 36 97.2 34 ......................G............. CAGCCCGCGGCGTCCGGTGGGTCGGTTCGCTGGG 7205256 36 97.2 41 ......................G............. CGAGTGAACGAGAGGGGGACGCCTTCGTGGTTGGAGTTGAA 7205333 36 100.0 34 .................................... CGCTTCTTGTGGTGTTCCACCACCGCCTTCGCAT 7205403 36 97.2 40 ..........T......................... CCTCCCAGGCCGGCAGACACGGGGAGAAGGCTCGCGGACC 7205479 36 100.0 35 .................................... ACGATGCCGATGGTGGCGCAGATGACCGAGGTTCG 7205550 36 97.2 0 .....................A.............. | ========== ====== ====== ====== ==================================== ========================================= ================== 65 36 98.7 36 CCGTGGCTCGCCGTGATGCCGGAAGGCGTTGAGCAC # Left flank : CCCGAAGCGATGGCGCAAGGTGTATGCGTTGTTGAAGGGGTACGGAGAGTGGTTGCAGCTCTCCGTGTTCCGGTGCTTGTTGACGGACCGGGACCGGGAGCAGCTCCGGTGGGAGCTGGCACGGCGGATGGACCCCGTGGATACCTTGTTGGTGATTGGATTGTGCGGTGGCTGTGTGGAGCGGGTGCGGGCTATCAACCCCGGGGAGGACTGGCCGGAGGAGCCACCGCCGTTCCGCGTGCTGTGAGGCGCTGGACATTCATGCACCTGCGCCTGGCGGAGGGGGCTTCAGTCGGAATCGGGTGAAAAGCTGAGGTCCGACGCGGGGTTGAGAGCTCTTTGACAGGTGAATAGGTGCTTGAATGGGTAAAAGCCTTGGGATTTCAGGCAGTTGGAGAGGCGAGGACGCGTGGAGGATGCGGGAGATGGTTCGTAGGGTGGGGGTGCTTGAAAAGGGGGGGACGTAAGTGGCTGGAGTTCCTTGCGAATTGAGCGGGGCT # Right flank : CGAGGAGCTTCGGGTCCCCCACGTACTCGGCCATGGGTGTGTCTCCCATTTCAAACGGGCAGGCCTCGTCGCAGGGGCAACCAACCAACGGGGCGTTGGGCATTCCAACGAGAAACCACGATGCGGCGAGTCGTGCAGCGAGCGGAGAATATGGAATTGCCACTGAAATGGTCAGACCCCAAGGCCAGCATGCTGCGCCTCCCAACTCCTGGGCGGCGTTGGTGAGGATTCCATGCGGTTGATGATGGTCGTTCTTGTGAGCCTTTGGGCAGTAGGGTGCGCTACCACCCGCGTGGTTCATCTGGATAGGGGGAATGGTCAGCAAGTCGTTCACGAGTCGGTGGACGTCAAGCCCGTGGAGGTGAGCGAAGGGGAGTTCAAGTCGGCCCTCACGCGCCTCATTCTCGACCTGCGGATGGATGTCGCGTTCCGGGAAGAGGAAGACGCGGACGCACGAGGTTGGGTGCGGTCCAGGACACTGCTCGCATCCTCGAAAGGGC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCGTGGCTCGCCGTGATGCCGGAAGGCGTTGAGCAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.80,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [7-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA //