Array 1 66656-67240 **** Predicted by CRISPRDetect 2.4 *** >NZ_SQNU01000194.1 Escherichia coli strain EEPERB130 NODE_1584_length_67210_cov_59.218761, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 66656 29 100.0 32 ............................. CGCCGCATTAATATTGATGACCAATATTCATT 66717 29 100.0 32 ............................. CTATTTTTACAGCGAGTTTTGCAACAAATTTT 66778 29 96.6 39 ............................N NNNNNNNNNATCATGATTCCGGACGACGTGCTGGCGCGA 66846 29 100.0 32 ............................. GCGTGCCAACGGAATGCACCCTCATTGGTGAT 66907 29 100.0 32 ............................. TCACTGTATACCCAACTATTGGAGATCATGTA 66968 29 100.0 32 ............................. GCGTGCCAACGGAATGCACCCTCATTGGTGAT 67029 29 100.0 32 ............................. AAATTAATTTTGAAACGGGTGTTGATGGTGAG 67090 29 100.0 32 ............................. CGCCGCATTAATATTGATGACCAATATTCATT 67151 29 100.0 32 ............................. CCGCTGCGCTGGCGTCAGGCGTACCGGTGGTG 67212 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ======================================= ================== 10 29 99.7 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : | # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0.41 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 90735-90035 **** Predicted by CRISPRDetect 2.4 *** >NZ_SQNU01000187.1 Escherichia coli strain EEPERB130 NODE_1093_length_117704_cov_62.104763, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 90734 29 100.0 32 ............................. CGTCCGCGGCTGCAACTGATGCCGGGGCTTAT 90673 29 100.0 32 ............................. AACCTTGTCGGGTCGCCCGTGCGTCATGATGA 90612 29 100.0 32 ............................. ATCCGCCGCCGGTTAACGCTGGACCAGTTCCG 90551 29 100.0 32 ............................. CCAGGACAGGCCGTGACGGTTGCCATTGAGTC 90490 29 100.0 32 ............................. GGATATAGAGCGGGTACTCGAGCGAAGCGGGG 90429 29 100.0 32 ............................. CCGACGTGGGGATTTACTGCCACGCATAAAAA 90368 29 100.0 32 ............................. TCATGAATATGGGGAAAACGAACAATCTGTTT 90307 29 100.0 32 ............................. ATCGGACGATGGCGATCGCAATCGCGCGGGAA 90246 29 100.0 32 ............................. TACAGTTTCCATAAATTCACCTCGTTTATATA 90185 29 100.0 32 ............................. AGTTCCCACAAACCTGGGTGCATCTCGCGTTC 90124 29 100.0 32 ............................. TTTTTGTTCTCTTCAAAACGCCGAACAACCAA 90063 29 93.1 0 ............T.....A.......... | ========== ====== ====== ====== ============================= ================================ ================== 12 29 99.4 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TTTTTACCTGTTTGAAAACAAAGAATTAGCTGATCTTTAATAATAAGGAAATGTTACATTAAGGTTGGTGGGTTGTTTTTATGGGAAAAAATGCTTTAAGAACAAATGTATACTTTTANNNNNNNNNNAGTTCCCCGCGCCAGCGGGGATAAACCGGCTCATTTCAAATGGTCAGGTCCGGTGGTTTTGAGTTCCCCGCGCCAGCGGGGATAAACCGTACTGGAAAAAGCTGGCGACGGTGAGCGCAGCGAGTTCCCCGCGCCAGCGGGGATAAACCGGGTTACGCCTGCACAGAGTACAATGCGTGGGGGAGTTCCCCGCGCCAGCGGGGATAAACCGCGGTGATGCGCGGTATCGATCAGCATCCGGCTGAGTTCCCCGCGCCAGCGGGGATAAACCGGCCGGGTTAAGAAGGTGTATGGATGGCCCGNNNNNNNNNNAGTTCCCCGCGCCAGCGGGGATAAACCGGGCACGGAATTGTTATGCTGTTCCCCTGACCG # Right flank : GACGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCGCCCCTGCGGTAGAACTCCCAACTCCCATTTTCATACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGCGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCTGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCAGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAATTTGTTGCTTCTACCGAAAGTACGGCAATACCGGCTTTGTCGAAAACTTCGGCGTCATTACAACAGCCAGTACCCTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCACTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 117735-116664 **** Predicted by CRISPRDetect 2.4 *** >NZ_SQNU01000187.1 Escherichia coli strain EEPERB130 NODE_1093_length_117704_cov_62.104763, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================= ================== 117734 27 93.1 40 --........................... GCGACCACGCAGAGCGGCGACAACCTGACGNNNNNNNNNN 117667 29 100.0 33 ............................. TAGGTAAATCACAGCTATTTGATAAGGGCGTGT 117605 29 100.0 32 ............................. AGTCGAAATGAGGCGCGTGTTCTGGAGGATAT 117544 29 100.0 32 ............................. CTATAGCAGCACTCCACCAGCTCGAGCAGCAG 117483 29 100.0 32 ............................. TCACTGTATACCCAACTATTGGAGATCATGTA 117422 29 100.0 32 ............................. ACAGTACCGGAGTTTGACGGTGCCAACGGCGG 117361 29 100.0 32 ............................. ATCCCCTGCGTCCTCTTTTGAATAATCGCGGC 117300 29 100.0 32 ............................. GTGCGCCAGCTATAAAAAACTCACCATCAACA 117239 29 86.2 12 ...............C.A.C....G.... CAAACAGAGCCG G [117213] Deletion [117199] 117197 29 100.0 32 ............................. ACAATCAGGGAACGATTGTTGACACTGTAAAA 117136 29 96.6 32 ............................T TGATCCGCGACCGCCAGATGGCGCAGCCTGTC 117075 29 100.0 40 ............................. CGCCGCGCGGCGGGTGAGTCCGTGTTTTATANNNNNNNNN 117006 29 96.6 32 N............................ CCATGACTATAAAAGCTTATATTTTGATAAAT 116945 29 100.0 32 ............................. TCGGTTTGCGCGTATTGTTGTTCGGGGTCTAT 116884 29 100.0 32 ............................. TGGCTGTGGCTTTGTTTTTTGCTCTGATATAT 116823 29 100.0 32 ............................. GCGTCCGTCAAAGAGGAAGCCAAAGCCATGCA 116762 29 100.0 41 ............................. GAGCCTGACGAGACTACTGAGGCCGTTCTNNNNNNNNNNTC 116692 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ========================================= ================== 18 29 98.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : | # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:-0.09, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //