Array 1 61718-62412 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_POPO01000119.1 Streptococcus suis strain 217 SS_0217_Contig119, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence                 	Spacer_Sequence                     	Insertion/Deletion
==========	======	======	======	================================	====================================	==================
     61718	    32	 100.0	    36	................................	TTGTCAGCCTTCTACCTCGATTTTGCCAAAGATGTC	
     61786	    32	 100.0	    34	................................	TTGACCGGTAAGAGCTCGGAAACGACGGAAAAGG  	
     61852	    32	 100.0	    33	................................	TTCTTTGTTTGCTAATTCAACTGCATATTCCAA   	
     61917	    32	 100.0	    33	................................	ATTTATATGTCCACATCTCAGCGGATGAGATTA   	
     61982	    32	 100.0	    33	................................	CAACTACATCTACTTGGTTTGTTGAAATGACGT   	
     62047	    32	 100.0	    35	................................	TTCCCGGCACGCTAAACATCGGCGGGAGTGCCTTT 	
     62114	    32	 100.0	    36	................................	ATTTTTCCATTTATAGTTGGGTACCTCATCCAAAAA	
     62182	    32	 100.0	    34	................................	GATTTGAGCTTTTGAAAGTCATCTTGACCATAAA  	
     62248	    32	 100.0	    36	................................	CCCTCGAAGAATGTTTATACGTCTCAGAAGCAACTC	
     62316	    32	 100.0	    33	................................	AGGGCATTGAGCTGTTCTTGGGTCAATGCTTGG   	
     62381	    32	  71.9	     0	.......T..TTG..TA.A...A.G.......	|                                   	
==========	======	======	======	================================	====================================	==================
        11	    32	  97.4	    34	GTCGCACCCTACACGGGTGCGTGGATTGAAAT	                                    	       

# Left flank :   GCAAAAGCTATTCGAGGCGAGTTGGACAGTTATCCTCCCTTTATGATATAGGAGCTATATTATGATGATATTAGTGACCTATGATGTCAATACAGAGACAGCAGCTGGACGAAAGCGGTTGAGAAAAGTAGCCAAGCTGTGCGTTGACTTTGGTCAACGTGTGCAACATTCTGTTTTCGAATGTTCAGTCACTCCAGCAGAATTTGTTGAAATAAAGAATAAGTTGCTGGAAATCATTGATAAGGAACAGGATAGTATCCGCTTTTATATGCTAGGAAAAAACTGGCAAAATCGTGTGGAAACGATTGGACAAGATACTAGTTATGATCCAGATCAAGGAGTCCTTCTGTTATAGATTCTCTCTGCGAATCGGACTTACTCATAAAATGCGAGGAGATTCGCGTGAAAAACATATGAAAAACAGTGAAAATAGAGTGAATTTATGATATATTCCATATCTGTAGAAACTTTATTTTTACAAAACAGTGTCAAATGGCACT
# Right flank :  TTGTTTTTTGCTTAACACAGTATATCTGGTATGGACGTGTTCGAAGTTTCCCTCCTTTAACTCATCTCCCCCACAATTTTCTAAAATTCTTGTTTTGTCTTGCTTGCTTCATGCTATAATAGTTGTATCAGTTTTTTAAAAGGAGACAAAGATGACAAACCTAAAAGAGCAGGTTGGGATTAAGGCGGCGGAATTTGTGACGGACGGGATGATTGTTGGGCTGGGAACTGGTTCGACGGCATACTATTTCGTGCAGGAGATTGGCCGCCGGGTTGCAGAAGAAGGGCTACAGATAACAGGCGTAACGACCTCTCATGCCACGGCAGAACATGCTGCGTCCCTTGGGATTCCCCTAAAAAATATCGACGAAGTCGAGTATGTGGACCTGACGGTAGATGGGGCTGACGAGGTGGATGGTGCCTTCAATGGTATAAAGGGTGGCGGTGCTGCACTGCTCATGGAGAAAGTGGTAGCAGTCAATAGCAAGGACTGCATCTGGA

# Questionable array : NO	 Score: 9.13
# 	Score Detail : 1:0, 2:3, 3:3, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTCGCACCCTACACGGGTGCGTGGATTGAAAT
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         F Score: 4.5/4.5
# 	A,T distribution in repeat prediction:     NA [7,7] Score: 0.37/0.37
# 	Reference repeat match prediction:         F [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  R [-4.90,-6.70] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      F [0-9] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: F [73.3-61.7]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [9.68,0.37   Confidence: HIGH] 

# Array family : I-C [Matched known repeat from this family],   
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