Array 1 45803-48479 **** Predicted by CRISPRDetect 2.4 *** >NZ_MKDD01000020.1 Latilactobacillus sakei strain RI-403 20150709.B-R403_R1_contig_20, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 45803 36 100.0 30 .................................... ATGACTCAAAGACTACGTATGACACAATCA 45869 36 100.0 30 .................................... ATGATATGAAAAGCATTCAATTAGACGGCG 45935 36 100.0 30 .................................... TTTAAATCGTGGACGTCTTCGTCGATATCG 46001 36 100.0 30 .................................... TTCATTAAGGTATATACTTTTTAATATATA 46067 36 100.0 30 .................................... CGGTGCTGAGCGAGGGATTATCCTTTCAGC 46133 36 100.0 30 .................................... ACTATTGGCATATTAGCAACAATAGTATTA 46199 36 100.0 30 .................................... TTGACGAAAAGAAAGTATTAAAACCAATTG 46265 36 100.0 30 .................................... CAGACGAACAACAGTTGTTCTATGACAACT 46331 36 100.0 30 .................................... TACTTCAAAGTTCAGATGCACATGAACTTA 46397 36 100.0 30 .................................... ACCAATTAGAATAACCAACGTTAAAACAGC 46463 36 100.0 30 .................................... AGCCTGAATTATTATTGAGTGGTAGAGTTT 46529 36 100.0 30 .................................... TATCCAATTGAAACGCTGTCGCCATAATCT 46595 36 100.0 30 .................................... ACAATATTGAAAAGAGGGAAGATACTATGG 46661 36 100.0 30 .................................... ACTTTAATGTATCAATTGATTATCTATTAG 46727 36 100.0 30 .................................... CCTCACAGCTCAAGTCTGACAATTGGCGAT 46793 36 100.0 30 .................................... ACAGATGCGTTTAGCATTAGATACCACTTC 46859 36 100.0 30 .................................... TATCCAATTGAAACGCTGTCGCCGTAGTCT 46925 36 100.0 30 .................................... AAGGATTCAAAATAAATTATTCCAAGACTA 46991 36 100.0 30 .................................... AAGAATATACAGGAGGCCTATAAGATATGG 47057 36 100.0 31 .................................... TGGTGCAGATCGTGGGATTATTCTTTCAGCA 47124 36 100.0 30 .................................... TTACGTCGACCTTTTTAGCAACTTCTTCTT 47190 36 100.0 30 .................................... AGCGCAACAACAACGCTGATAAGCACGATT 47256 36 100.0 30 .................................... CAAGAAATTGAAGTAGTTGAAGATGCTGAA 47322 36 100.0 30 .................................... TGTTAGACCGGTTTGGCGGGTATTATCGTA 47388 36 100.0 30 .................................... AAGGGATAGAGTGGTGCCGGTCGGATTATC 47454 36 100.0 30 .................................... TTACTTCGTTTGTAGACTATAATGAGCTTT 47520 36 97.2 30 ............................A....... TGAATACTACGGGAAACCGTTTAAAGACGT 47586 36 97.2 30 ............................A....... TGTGCTTCAACCTTGTCCAGGCGGTGCTTA 47652 36 97.2 30 ............................A....... TTTAATATCTTTGTTAAAATCTCGATAATG 47718 36 97.2 30 ............................A....... ACAAACCATTGTTAACCACTGCCGTTTTAG 47784 36 97.2 30 ............................A....... TTTTATCATCCCAAATTAAACTATTCCATT 47850 36 97.2 30 ............................A....... CAATTGTCGAATATGATAATAAACTGCACG 47916 36 97.2 30 ............................A....... AAGAAGTTATTACAATCTGGGACAACGACA 47982 36 97.2 30 ............................A....... AGAATACTATTTCACGCCTTAAAGGATTGG 48048 36 94.4 30 .........................G..A....... GCTAATTTATTGGCAGATTCTAGATCAGTA 48114 36 97.2 30 ............................A....... ATTAAATGGGATTTTTTAAACCGGTGAACA 48180 36 97.2 30 ............................A....... CCTACTATCATTTAACTGGCGACGTTGGGT 48246 36 97.2 30 ............................A....... TGAACAGTTTGATGGGTCAGTTAGGATGAT 48312 36 97.2 30 ............................A....... TGTTCAGGATTAATCTCGCCGCCTTTCGCA 48378 36 94.4 30 ..........................T.A....... ACGGTTCAAGAAGATTTTACAAAGTGGTTT 48444 36 88.9 0 ...........................CA....G.T | ========== ====== ====== ====== ==================================== =============================== ================== 41 36 98.6 30 GTTTTAGAAGAGTATCAAATCAATGAGTGGTTCAAC # Left flank : AACGATTCTGAGCACGAGTAGTCCGTCTGTATATACTAAATTAATCGCAGGGGCCTCTGGTCAAGATGATACACTTCATTTAAGCGATGACCATTATCGGTTACTAGAATATATCAAAGGGATGATTTGGATTGGTGAAATTTCAGCGGTTGATTTAAATCATCTTTTTCAAAATAAGTTGATCAAAAAATTTACAGCCGATCTAACGGATGAACAACGACAAAAGGTAGTTAATCTGAATAATGAATTACGAGCCACTATTTTAGAAGCCGCGTTTATGTATGAATTAGCTTTAGATATTGACCATGAGTTAGATTTGCAAAAGTTAATTAAATTTTGCAATTTAAAATTTTCGAATGATGTTCAAGATGATCCATATGGTATAATAGAAAGCATAGTACAAACTGCTATAGAGTTACAAGAAACAAGAATTATCACATTGATAATGATTATGTTGAATGGCGTTACGAATAAAGTGAGTATTTGATGAAAAAACATCG # Right flank : TCACGCTAATAATCGTAAATTCTTTTAATTTAAGTTTGGGGAGTACCTTTAAAGGGGTACTCTTTTTTATTAGATTTAATGCATATCCTTGATTGATATTTCACGATTCGACTATTGAAAAGCGTTCTCATTTAGCTTAGAATTAAGTCAGCAACAACGTGCTATAATGCGATTTTTGGAGGGTCAGTAATGTCTAAATTAGAAATTATCGATTTACACGTCGGAATTGACGGTAAAGAAATTTTAAAAGGTGTTAACTTAGAAATGAATACGGGTGAGATTCACGCCATCATGGGACCAAATGGGACCGGGAAATCAACCCTTTCAGAAACCATCATGGGTAATCCTAAATATGAAGTACTTCAAGGTGAAATTAAATTAGACGGTCAAAATATTCTTGAAATGCCAGTTGATGAACGAGCACGCGCTGGCTTATTCTTAGCGATGCAATATCCATCTGAAATTCAAGGTGTTACGAACGCTGAATTTATGCGAGCTGC # Questionable array : NO Score: 3.19 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAAGAGTATCAAATCAATGAGTGGTTCAAC # Alternate repeat : GTTTTAGAAGAGTATCAAATCAATGAGTAGTTCAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA //