Array 1 1912077-1911385 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_SCCL01000004.1 Mycobacterium tuberculosis strain M0006055-9 M0006055-9_contig4, whole genome shotgun sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence              	Spacer_Sequence                                	Insertion/Deletion
==========	======	======	======	=============================	===============================================	==================
   1912076	    29	 100.0	    42	.............................	GCCCCGTGGATGGCGGATGCGTTGTGCGCGCAAGTGTCGTCA     	
   1912005	    29	 100.0	    47	.............................	CCGACGATGGCCAGTAAATCGGCGTGGGTAACCGATCCGGGTCGTCA	
   1911929	    29	 100.0	    45	.............................	TAGTACGCCATCTGTGCCTCATACAGGTCCAGTGCCCTGTCGTCA  	
   1911855	    29	 100.0	    42	.............................	CTGACGGCACGGAGCTTTCCGGCTTCTATCAGGTAGTCGTCA     	
   1911784	    29	 100.0	    43	.............................	CCTCATGGTGGGACATGGACGAGCGCGACTATCGGGGTCGTCG    	
   1911712	    29	 100.0	    44	.............................	TGGACGCAGAATCGCACCGGGTGCGGGAGGTGCAGCAGTCGTCA   	
   1911639	    29	 100.0	    47	.............................	GCATATCGCCCGCCACACCACAGCCACGCTACTGCTCCATGTCCTCA	
   1911563	    29	 100.0	    47	.............................	ACACCGCCGATGACAGCTATGTCCGAGTGACATCCTCCCAGTCGTCA	
   1911487	    29	  96.6	    45	...........A.................	TTGAACCGCCCTTCGCGCGGTGTTTCGGCCGTGCCCGAGTCGTCA  	
   1911413	    29	 100.0	     0	.............................	|                                              	
==========	======	======	======	=============================	===============================================	==================
        10	    29	  99.7	    45	GACCCAAAACCCCGAGAGGGGACGGAAAC	                                               	       

# Left flank :   TTCTCACTTGTCTACGAGGTCTCCTTCGGCACCCCCGGCGAGGAACAGAAGGCGTCTCTGCCTTCCTCCGATGAGATCATCGAGGACTTCAACGCCATCGCGCGCGGCCTGAAGTTGCTCGAACTCGACTACCTCGGCGGCAGCGGAACCCGTGGCTACGGGCAGGTCAAGTTCAGCAACCTGAAAGCCCGCGCCGCAGTCGGCGCCCTCGACGGTTCTCTGCTGGAGAAGCTAAACCATGAACTCGCGGCTGTTTAGGTTCGACTTCGACCGCACACACTTCGGCGACCACGGCCTCGAGTCGTCCACGATTAGCTGCCCCGCGGACACCCTCTACTCTGCGCTTTGCGTTGAAGCGCTACGGATGGGTGGCCAGCAGCTGCTTGGCGAACTCGTTGCGTGCTCGACGCTGCGGTTGACCGATCTGCTGCCCTATGTGGGGCCCGATTACCTGGTTCCCAAGCCCCTGCACAGCGTTCGGTCCGACGGCTCAAGTATGC
# Right flank :  TACGACGACTGGGTCGCCACCGCGTCTGTTGACCGGCATTCAGGATGAGCATGATGGCGGCGTTGACGGTGAGGACGTTTGGTCATGAAATGACCCCGCCGGGAGATGTCCGGCGGGGTCGGTGGTGTTCGGGGTGTCGGTGTGGTGTTCAGTCTGCCGTGACTTCGGCGATGGCGGTGCGGGTGGTGGATTCGTCGACGATGGCCTTGTCGGCGGCGAAGGCGGCGACGAGGGCTTGCAGGGCGAGGTTGTTGACCGCGCGGGGGTAGCCCCGGCTGGTCTGGTGGATCAACCCGATGGCGTCGTCGGAGAACAGGGCATCGTCGCGTCCGGCTAGCTTGAGGTGGTGGCGTAGGTAGCTGCCGGTGTTGGTGTCGGTCATGGGCGGCATGGCATATCGGAGTCCGATGCGCTGGTCAAGCGCGGCGAGCACGCCGAGTTTCATCCGCCGCCGCAGGGTGGGTTGGCCGATGAGCAGGCAGGCGAACGGGCTTGACGAG

# Questionable array : NO	 Score: 6.25
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GACCCAAAACCCCGAGAGGGGACGGAAAC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     R [0,11] Score: 0.37/0.37
# 	Reference repeat match prediction:         NA 
# 	Secondary Structural analysis prediction:  R [-6.40,-7.70] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      R [1-0] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: NA [38.3-36.7]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0,1.15   Confidence: HIGH] 

# Array family : NA
//